Rroxscaffold_2G00099620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000314
Physical Location & Seq
Reverse (-)
21386686 .. 21387063
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099620.1

Sequence Viewer

Length: 351 bp
ATGGCAACGATAGAAGGCTATGTGTCCATTCCCATTCCGGAGAATGTGTGCATAGAAGAGCGGCTTGATATCCTTCAAAAGAATTCTACCGCATACCATGAGAATGCGAGAAAAGCCCTCGCGGAGGACCGTCGACGGCTCGATGAGTTCATGATTTCGGTCACGAGGCTCGAGTTGGGGGCACAACAAACACAAGGCGAATTGGAACGTCAAGAACCCGCTCGCGAAGAGGTGGCAATCAACCTAAGGGTCTCACTAGTGAGTAACGACCTTACACGAGAGGTTGTGCATGGAGAAGACGGTCCACAAGAATGTTTTTCGACGGTGAAATTGTCTCGAACGGATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.16

Weight (kDa)

4.78

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 61, 221
AccI GTMKAC 1 cut(s) 133
AccII CGCG 2 cut(s) 122, 225
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 4 cut(s) 61, 90, 122, 219
AcsI RAATTY 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 77
AhlI ACTAGT 1 cut(s) 256
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 256, 339
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 37
ApoI RAATTY 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 127, 302
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 2 cut(s) 127, 302
AxyI CCTNAGG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 184
BauI CACGAG 2 cut(s) 163, 276
BbsI GAAGAC 1 cut(s) 303
BceAI ACGGC 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 256, 339
BcuI ACTAGT 1 cut(s) 256
BfaI CTAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 127, 302
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 127, 302
BpiI GAAGAC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse21I CCTNAGG 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 184
Bsh1236I CGCG 2 cut(s) 122, 225
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 256, 339
BsmI GAATGC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 184
Bsp13I TCCGGA 1 cut(s) 37
Bsp68I TCGCGA 1 cut(s) 225
BspACI CCGC 4 cut(s) 61, 90, 122, 219
BspEI TCCGGA 1 cut(s) 37
BspFNI CGCG 2 cut(s) 122, 225
BspHI TCATGA 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 256
BsrBI CCGCTC 2 cut(s) 61, 221
BssSI CACGAG 2 cut(s) 163, 276
Bst2BI CACGAG 2 cut(s) 163, 276
Bst4CI ACNGT 3 cut(s) 131, 302, 325
Bst6I CTCTTC 2 cut(s) 51, 222
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 245
BstENI CCTNNNNNAGG 1 cut(s) 122
BstFNI CGCG 2 cut(s) 122, 225
BstMAI GTCTC 2 cut(s) 256, 339
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 2 cut(s) 122, 225
BstV2I GAAGAC 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 245
BtuMI TCGCGA 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 127, 302
CviAII CATG 3 cut(s) 98, 151, 290
CviJI RGCY 6 cut(s) 18, 64, 116, 139, 169, 348
CviKI_1 RGCY 6 cut(s) 18, 64, 116, 139, 169, 348
DdeI CTNAG 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 51, 222
EarI CTCTTC 2 cut(s) 51, 222
Eco31I GGTCTC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 127, 302
Eco81I CCTNAGG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 82
EcoRV GATATC 1 cut(s) 70
FaeI CATG 3 cut(s) 101, 154, 293
FaiI YATR 6 cut(s) 21, 53, 94, 99, 152, 291
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 3 cut(s) 97, 150, 289
FauI CCCGC 1 cut(s) 226
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 257
GluI GCNGC 1 cut(s) 62
HapII CCGG 1 cut(s) 38
Hin1II CATG 3 cut(s) 101, 154, 293
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 134, 305
Hpy188III TCNNGA 6 cut(s) 38, 151, 163, 212, 224, 336
Hpy8I GTNNAC 2 cut(s) 134, 305
Hpy99I CGWCG 3 cut(s) 135, 138, 325
HpyAV CCTTC 2 cut(s) 8, 83
HpyCH4III ACNGT 3 cut(s) 131, 302, 325
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 51, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 3 cut(s) 101, 154, 293
Kpn2I TCCGGA 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 51
LpnPI CCDG 1 cut(s) 51
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 2 cut(s) 160, 263
MbiI CCGCTC 2 cut(s) 61, 221
MboII GAAGA 3 cut(s) 68, 239, 308
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 3 cut(s) 82, 200, 329
MnlI CCTC 5 cut(s) 118, 128, 159, 223, 274
MroI TCCGGA 1 cut(s) 37
MslI CAYNNNNRTG 2 cut(s) 102, 310
MspI CCGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 2 cut(s) 122, 225
MwoI GCNNNNNNNGC 1 cut(s) 113
NlaIII CATG 3 cut(s) 101, 154, 293
NmuCI GTSAC 1 cut(s) 160
NruI TCGCGA 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 170
PagI TCATGA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 127, 302
PspXI VCTCGAGB 1 cut(s) 170
RruI TCGCGA 1 cut(s) 225
RseI CAYNNNNRTG 2 cut(s) 102, 310
SalI GTCGAC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 51
SatI GCNGC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 127, 302
SduI GDGCHC 1 cut(s) 184
SetI ASST 6 cut(s) 211, 234, 246, 273, 285, 350
Sfr274I CTCGAG 1 cut(s) 170
SgrDI CGTCGACG 1 cut(s) 132
SinI GGWCC 2 cut(s) 127, 302
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 102, 310
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 256
Sse9I AATT 3 cut(s) 82, 200, 329
SsiI CCGC 4 cut(s) 61, 90, 122, 219
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 3 cut(s) 131, 302, 325
TaiI ACGT 1 cut(s) 211
TaqI TCGA 5 cut(s) 133, 141, 171, 320, 337
TaqII GACCGA 1 cut(s) 148
TasI AATT 3 cut(s) 82, 200, 329
TauI GCSGC 1 cut(s) 64
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 127, 302
XagI CCTNNNNNAGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 82
XhoI CTCGAG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.