Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

16071336 .. 16072758

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATACCGACCAGAGACATGGAGGGCAAACAATTGATGACACCTCTGCCAATATTCATCCTCTTGCCGATCAGACACAAGTTCATAGCAAAGGAAAACATGTAGAAGAATTGAATAACCAAGCAACTGGACGTGTTCAAAAGGATGAGCAGAGTCATGGTCAACTTGTCCAATCACATCAGCAGTCAAGTTCCAAGCCAATTCGTGGCTTTGTTTATCAAAACCAGCTAAGTGGTTATAGATCTACTGGGTACCATGAGAATAATCATGATCATTGTGGTTCTTGTTCTACTATTGGACGTTACCAAGAGAATGGCCAAAATCATGGAAAGGAGCTCCATGACGATGATACATCACATGCATCTCGCCATGCTGCTTACAACCTCTACAGGGGCCCATTCATCTTTGGCGGATCCTTTTCAGAATTTTCAAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

6.19

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	2 cut(s)	408, 421
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	206, 391
AflIII	ACRYGT	2 cut(s)	100, 133
AgsI	TTSAA	3 cut(s)	115, 140, 432
AjiI	CACGTC	1 cut(s)	134
AluBI	AGCT	2 cut(s)	229, 337
AluI	AGCT	2 cut(s)	229, 337
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	408, 421
AoxI	GGCC	2 cut(s)	316, 394
ApaI	GGGCCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	394, 395
BaeGI	GKGCMC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	2 cut(s)	339, 398
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	361
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	388
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	394, 395
BmiI	GGNNCC	4 cut(s)	254, 395, 396, 415
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	371
BmuI	ACTGGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 391
Bse1I	ACTGG	2 cut(s)	133, 253
BseGI	GGATG	2 cut(s)	58, 151
BseLI	CCNNNNNNNGG	2 cut(s)	206, 391
BseNI	ACTGG	2 cut(s)	133, 253
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	361
BshFI	GGCC	2 cut(s)	318, 396
BshNI	GGYRCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	206, 391
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	318, 396
Bsp120I	GGGCCC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	339, 398
Bsp143I	GATC	4 cut(s)	70, 242, 271, 413
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	318, 396
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	4 cut(s)	254, 395, 396, 415
BspPI	GGATC	2 cut(s)	408, 421
BspT107I	GGYRCC	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	133, 253
BssMI	GATC	4 cut(s)	70, 242, 271, 413
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	58, 151
BstKTI	GATC	4 cut(s)	73, 245, 274, 416
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	4 cut(s)	70, 242, 271, 413
BstNSI	RCATGY	2 cut(s)	104, 362
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	242, 413
BstXI	CCANNNNNNTGG	5 cut(s)	20, 128, 233, 314, 326
BstYI	RGATCY	2 cut(s)	242, 413
BsuRI	GGCC	2 cut(s)	318, 396
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	58, 151
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	394, 395
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	9 cut(s)	20, 101, 158, 257, 269, 326, 341, 359, 371
CviJI	RGCY	6 cut(s)	199, 210, 229, 318, 337, 396
CviKI_1	RGCY	6 cut(s)	199, 210, 229, 318, 337, 396
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	4 cut(s)	72, 244, 273, 415
DpnII	GATC	4 cut(s)	70, 242, 271, 413
EaeI	YGGCCR	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	426
Ecl136II	GAGCTC	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	339, 398
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	2 cut(s)	339, 398
FaeI	CATG	9 cut(s)	23, 104, 161, 260, 272, 329, 344, 362, 374
FatI	CATG	9 cut(s)	19, 100, 157, 256, 268, 325, 340, 358, 370
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	2 cut(s)	45, 158
FriOI	GRGCYC	2 cut(s)	339, 398
Fsp4HI	GCNGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	318, 396
Hin1II	CATG	9 cut(s)	23, 104, 161, 260, 272, 329, 344, 362, 374
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	75, 424
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	133, 301
HpyCH4V	TGCA	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	133, 301
Hsp92II	CATG	9 cut(s)	23, 104, 161, 260, 272, 329, 344, 362, 374
KpnI	GGTACC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	70, 242, 271, 413
LmnI	GCTCC	2 cut(s)	334, 342
LpnPI	CCDG	5 cut(s)	26, 114, 234, 239, 376
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	371
MaeII	ACGT	2 cut(s)	133, 301
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	4 cut(s)	72, 244, 273, 415
MboI	GATC	4 cut(s)	70, 242, 271, 413
MboII	GAAGA	1 cut(s)	119
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	2 cut(s)	242, 413
MhlI	GDGCHC	2 cut(s)	339, 398
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	4 cut(s)	33, 110, 201, 425
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	17, 55, 72, 395
Mox20I	TGGCCA	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	318
MunI	CAATTG	1 cut(s)	33
NdeII	GATC	4 cut(s)	70, 242, 271, 413
NlaIII	CATG	9 cut(s)	23, 104, 161, 260, 272, 329, 344, 362, 374
NlaIV	GGNNCC	4 cut(s)	254, 395, 396, 415
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	2 cut(s)	104, 362
PagI	TCATGA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PscI	ACATGT	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	339
PspN4I	GGNNCC	4 cut(s)	254, 395, 396, 415
PspOMI	GGGCCC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	394, 395
PsuI	RGATCY	2 cut(s)	242, 413
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	339
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	4 cut(s)	70, 242, 271, 413
Sau96I	GGNCC	2 cut(s)	394, 395
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	339, 398
SetI	ASST	6 cut(s)	47, 136, 231, 304, 339, 387
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	4 cut(s)	33, 110, 201, 425
SsiI	CCGC	1 cut(s)	411
SspI	AATATT	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	339
TaiI	ACGT	2 cut(s)	136, 304
TasI	AATT	4 cut(s)	33, 110, 201, 425
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	47, 74, 391
Van91I	CCANNNNNTGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	2 cut(s)	104, 362
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.