Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

67142775 .. 67159031

Gene Structure 16257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATCAAACAAACCCAAGTAAAACCACGAGCAGGTCATGAATGTCGTTGCGACCCAAAGCATAAGAAGACCTCATCGAAGTTCGCGACCTTGCGCAAAGAAGGTTCCAGCTTGGCTAATCAAGTAAGTTCGCATCAAGGTGAATTGAAAAGTCAAGAACTTGCACACGAAGAGGTTGTTTACCGACTTGCCTATAGGTATGGCCGACCTTACTATCATCAATTTAGCTTTGGCCATGCTACTGGACGACATGGTGAAGGTGGTCAAAATCATGGCCAACTTAATTATGAAATAAGTTGTGGTCTTGAGAAGCCAATTTGTGGCTTTATTAGTCAATTCAACTTGAATTTCTTCATCAGTGCTTCAAGGCCAAGCGGTGGCTTTAATATATGTGGAGGATACCTCTATAATCCACAGAATTCAAACCAACAAGTGGTCAAATGCAAAAGCCAGTTCGTGGCTTATTATTTGGAAGACACCATGGTCTTTGACATGGTAGTTGGCGACAAAGCTGATCTTGGGGCTTCGTTATCTCCAAAATTGCAATTGAAGATTATCCTTCACCAACCGACAAAGATACTTCGTAATCTTTCTTCACTTCTAGGCTCGCTGAGGGCACTTGGCCTAAGCCTCGCTAGCGAGATTCGATCAGGCGAAGCGCTTCGCCAGAATTTTTCCAACAAGCTATGCACATTCTGTGGCAAAGGCGATCTGAGGGCTATCAAGTGGTCTTCAATGGACAATAGGCCAACCCCAGTGGCCGATGTCGAGGGGGAGACAAGAAAAAGTCTTTTGACGCTAAATCAAATTGCAGGAGGTGACACATCCTATCAGGATAATCTTCTACTACTGCTGCGAAGATCAAGTTCAATTTCTGGGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

294

Amino Acids

32.63

Weight (kDa)

9.41

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
Acc16I	TGCGCA	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	23
AccB7I	CCANNNNNTGG	4 cut(s)	320, 377, 433, 457
AccII	CGCG	1 cut(s)	86
AciI	CCGC	1 cut(s)	375
AcoI	YGGCCR	4 cut(s)	202, 232, 274, 759
AcsI	RAATTY	3 cut(s)	346, 418, 670
AfeI	AGCGCT	1 cut(s)	660
AfiI	CCNNNNNNNGG	5 cut(s)	32, 320, 377, 433, 457
AgsI	TTSAA	8 cut(s)	148, 340, 346, 366, 423, 550, 735, 870
AluBI	AGCT	4 cut(s)	111, 228, 512, 685
AluI	AGCT	4 cut(s)	111, 228, 512, 685
Alw26I	GTCTC	1 cut(s)	770
Aor51HI	AGCGCT	1 cut(s)	660
AoxI	GGCC	7 cut(s)	202, 232, 274, 368, 622, 746, 759
ApeKI	GCWGC	1 cut(s)	853
ApoI	RAATTY	3 cut(s)	346, 418, 670
Asp700I	GAANNNNTTC	2 cut(s)	350, 660
AspLEI	GCGC	2 cut(s)	96, 661
AsuHPI	GGTGA	4 cut(s)	152, 266, 554, 830
AsuNHI	GCTAGC	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	619
BalI	TGGCCA	2 cut(s)	234, 276
BarI	GAAGNNNNNNTAC	2 cut(s)	577, 609
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	3 cut(s)	74, 480, 723
BbvCI	CCTCAGC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	840
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	2 cut(s)	602, 636
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	1 cut(s)	854
BlsI	GCNGC	1 cut(s)	855
BmiI	GGNNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	1 cut(s)	142
BmtI	GCTAGC	1 cut(s)	639
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	3 cut(s)	74, 480, 723
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
Bpu10I	CCTNAGC	2 cut(s)	611, 626
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 320, 377, 433, 457
Bse1I	ACTGG	3 cut(s)	247, 451, 755
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	824
BseLI	CCNNNNNNNGG	5 cut(s)	32, 320, 377, 433, 457
BseMII	CTCAG	2 cut(s)	602, 704
BseNI	ACTGG	3 cut(s)	247, 451, 755
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	7 cut(s)	204, 234, 276, 370, 624, 748, 761
BslI	CCNNNNNNNGG	5 cut(s)	32, 320, 377, 433, 457
BsmAI	GTCTC	1 cut(s)	770
BsnI	GGCC	7 cut(s)	204, 234, 276, 370, 624, 748, 761
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	3, 514, 647, 709, 860
Bsp19I	CCATGG	1 cut(s)	480
Bsp68I	TCGCGA	1 cut(s)	86
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	7 cut(s)	204, 234, 276, 370, 624, 748, 761
BspCNI	CTCAG	2 cut(s)	603, 705
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	23
BspOI	GCTAGC	1 cut(s)	639
BsrI	ACTGG	3 cut(s)	247, 451, 755
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	5 cut(s)	3, 514, 647, 709, 860
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	608, 637
BstDEI	CTNAG	3 cut(s)	611, 626, 713
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	824
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	96, 661
BstKTI	GATC	5 cut(s)	6, 517, 650, 712, 863
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	5 cut(s)	3, 514, 647, 709, 860
BstMWI	GCNNNNNNNGC	1 cut(s)	636
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	840
BstV2I	GAAGAC	3 cut(s)	74, 480, 723
BstXI	CCANNNNNNTGG	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	7 cut(s)	204, 234, 276, 370, 624, 748, 761
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	824
BtsIMutI	CAGTG	2 cut(s)	364, 762
BtuMI	TCGCGA	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	608, 637
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	2 cut(s)	96, 661
CseI	GACGC	1 cut(s)	805
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviAII	CATG	6 cut(s)	38, 236, 251, 272, 481, 493
DdeI	CTNAG	3 cut(s)	611, 626, 713
DpnI	GATC	5 cut(s)	5, 516, 649, 711, 862
DpnII	GATC	5 cut(s)	3, 514, 647, 709, 860
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	4 cut(s)	202, 232, 274, 759
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	480
Eco47III	AGCGCT	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	6 cut(s)	41, 239, 254, 275, 484, 496
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FatI	CATG	6 cut(s)	37, 235, 250, 271, 480, 492
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	854
FokI	GGATG	1 cut(s)	811
Fsp4HI	GCNGC	1 cut(s)	854
FspBI	CTAG	2 cut(s)	602, 636
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	2 cut(s)	95, 660
GluI	GCNGC	1 cut(s)	854
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	7 cut(s)	204, 234, 276, 370, 624, 748, 761
HgaI	GACGC	1 cut(s)	805
HhaI	GCGC	2 cut(s)	96, 661
Hin1II	CATG	6 cut(s)	41, 239, 254, 275, 484, 496
Hin6I	GCGC	2 cut(s)	94, 659
HinP1I	GCGC	2 cut(s)	94, 659
HinfI	GANTC	1 cut(s)	643
HphI	GGTGA	4 cut(s)	152, 266, 554, 830
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	714
Hpy188III	TCNNGA	5 cut(s)	38, 85, 155, 305, 833
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	95, 251, 569
HpyCH4V	TGCA	5 cut(s)	164, 444, 544, 690, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	636
HpyF3I	CTNAG	3 cut(s)	611, 626, 713
Hsp92II	CATG	6 cut(s)	41, 239, 254, 275, 484, 496
HspAI	GCGC	2 cut(s)	94, 659
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 514, 647, 709, 860
Lsp1109I	GCAGC	1 cut(s)	840
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	602, 636
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	5 cut(s)	5, 516, 649, 711, 862
MboI	GATC	5 cut(s)	3, 514, 647, 709, 860
MboII	GAAGA	9 cut(s)	79, 182, 343, 485, 562, 585, 723, 833, 870
MfeI	CAATTG	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	619
MlsI	TGGCCA	2 cut(s)	234, 276
MluNI	TGGCCA	2 cut(s)	234, 276
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	9 cut(s)	82, 166, 389, 413, 606, 641, 708, 763, 809
Mox20I	TGGCCA	2 cut(s)	234, 276
MroXI	GAANNNNTTC	2 cut(s)	350, 660
MscI	TGGCCA	2 cut(s)	234, 276
MseI	TTAA	2 cut(s)	282, 384
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	2 cut(s)	234, 276
MunI	CAATTG	1 cut(s)	545
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	636
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	5 cut(s)	3, 514, 647, 709, 860
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	6 cut(s)	41, 239, 254, 275, 484, 496
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	818
NruI	TCGCGA	1 cut(s)	86
NsbI	TGCGCA	1 cut(s)	95
PagI	TCATGA	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdmI	GAANNNNTTC	2 cut(s)	350, 660
PfeI	GAWTC	1 cut(s)	643
PflMI	CCANNNNNTGG	4 cut(s)	320, 377, 433, 457
PkrI	GCNGC	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	106
RruI	TCGCGA	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	282, 384
SatI	GCNGC	1 cut(s)	854
Sau3AI	GATC	5 cut(s)	3, 514, 647, 709, 860
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	2 cut(s)	602, 636
StyI	CCWWGG	1 cut(s)	480
TaqI	TCGA	3 cut(s)	77, 646, 768
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	2 cut(s)	282, 384
Tru9I	TTAA	2 cut(s)	282, 384
TscAI	CASTG	2 cut(s)	364, 762
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	1 cut(s)	853
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	3 cut(s)	54, 303, 343
TspRI	CASTG	2 cut(s)	364, 762
Van91I	CCANNNNNTGG	4 cut(s)	320, 377, 433, 457
XapI	RAATTY	3 cut(s)	346, 418, 670
XmnI	GAANNNNTTC	2 cut(s)	350, 660
XspI	CTAG	2 cut(s)	602, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.