Rroxscaffold_153G00436600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000153
OG0000314
Physical Location & Seq
Forward (+)
133414 .. 133713
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_153G00436600.1

Sequence Viewer

Length: 300 bp
ATGAGACTATCGCGATCCTTATGGAGAATGTCGAGAACCATCGCAAGAAGCCGGACGCGGATCTCGCCGAGAAACTGCAAAGTCGAAAGGCTCCTCCGCGAGTTTGAGCAGCGTATGACTCTCTATGCGGAAAATACCAGCGGCGGGTTACACGGACGAGAGGGCGCCTTGAAGGCGCAAGCTATAACTATCGCCGCCGCACAAGACGAGCGTCATACGACAATTTTGAACGCTATAGCGGAACAAAACAAGCATACCTCATCGAGTTCGCGACCTTGTGCAAGGAAGGTCCCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.23

Weight (kDa)

11.43

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 4 cut(s) 13, 58, 99, 271
AciI CCGC 8 cut(s) 58, 97, 128, 141, 144, 195, 198, 239
AclWI GGATC 2 cut(s) 9, 68
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 172, 229
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwI GGATC 2 cut(s) 9, 68
ApeKI GCWGC 1 cut(s) 109
AspLEI GCGC 2 cut(s) 167, 178
AspS9I GGNCC 1 cut(s) 289
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 234
BfoI RGCGCY 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 4 cut(s) 110, 142, 195, 198
BlsI GCNGC 4 cut(s) 111, 143, 196, 199
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 3 cut(s) 92, 166, 291
BoxI GACNNNNGTC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 4 cut(s) 13, 58, 99, 271
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 14, 60
Bsp68I TCGCGA 2 cut(s) 13, 271
BspACI CCGC 8 cut(s) 58, 97, 128, 141, 144, 195, 198, 239
BspFNI CGCG 4 cut(s) 13, 58, 99, 271
BspLI GGNNCC 3 cut(s) 92, 166, 291
BspPI GGATC 2 cut(s) 9, 68
BspT107I GGYRCC 1 cut(s) 164
BssMI GATC 2 cut(s) 14, 60
BssNI GRCGYC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 180
BstFNI CGCG 4 cut(s) 13, 58, 99, 271
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 167, 178
BstKTI GATC 2 cut(s) 17, 63
BstMBI GATC 2 cut(s) 14, 60
BstMWI GCNNNNNNNGC 2 cut(s) 64, 173
BstPAI GACNNNNGTC 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 4 cut(s) 13, 58, 99, 271
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 25
BtuMI TCGCGA 2 cut(s) 13, 271
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 2 cut(s) 167, 178
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 2 cut(s) 64, 200
CviJI RGCY 3 cut(s) 51, 91, 182
CviKI_1 RGCY 3 cut(s) 51, 91, 182
DinI GGCGCC 1 cut(s) 166
DpnI GATC 2 cut(s) 16, 62
DpnII GATC 2 cut(s) 14, 60
Eco47I GGWCC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 289
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FaiI YATR 7 cut(s) 22, 116, 126, 185, 216, 236, 255
FaqI GGGAC 1 cut(s) 275
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 110, 142, 195, 198
Fsp4HI GCNGC 4 cut(s) 110, 142, 195, 198
GlaI GCGC 2 cut(s) 166, 177
GluI GCNGC 4 cut(s) 110, 142, 195, 198
HaeII RGCGCY 1 cut(s) 168
HapII CCGG 1 cut(s) 52
HgaI GACGC 2 cut(s) 64, 200
HhaI GCGC 2 cut(s) 167, 178
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 2 cut(s) 165, 176
HinP1I GCGC 2 cut(s) 165, 176
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 52
Hpy188III TCNNGA 4 cut(s) 12, 33, 270, 292
HpyAV CCTTC 2 cut(s) 166, 280
HpyCH4V TGCA 2 cut(s) 78, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 173
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 2 cut(s) 165, 176
KasI GGCGCC 1 cut(s) 164
Kzo9I GATC 2 cut(s) 14, 60
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 2 cut(s) 65, 151
Lsp1109I GCAGC 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 147
MalI GATC 2 cut(s) 16, 62
MboI GATC 2 cut(s) 14, 60
MflI RGATCY 1 cut(s) 60
MluCI AATT 1 cut(s) 222
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 3 cut(s) 104, 154, 268
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 1 cut(s) 52
MvnI CGCG 4 cut(s) 13, 58, 99, 271
MwoI GCNNNNNNNGC 2 cut(s) 64, 173
NarI GGCGCC 1 cut(s) 165
NdeII GATC 2 cut(s) 14, 60
NlaIV GGNNCC 3 cut(s) 92, 166, 291
NmeAIII GCCGAG 1 cut(s) 93
NruI TCGCGA 2 cut(s) 13, 271
PkrI GCNGC 4 cut(s) 111, 143, 196, 199
PleI GAGTC 1 cut(s) 112
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 92, 166, 291
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PsuI RGATCY 1 cut(s) 60
RruI TCGCGA 2 cut(s) 13, 271
SatI GCNGC 4 cut(s) 110, 142, 195, 198
Sau3AI GATC 2 cut(s) 14, 60
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 112
SetI ASST 4 cut(s) 184, 260, 277, 291
SfcI CTRYAG 1 cut(s) 234
SfoI GGCGCC 1 cut(s) 166
SinI GGWCC 1 cut(s) 289
Sse9I AATT 1 cut(s) 222
SsiI CCGC 8 cut(s) 58, 97, 128, 141, 144, 195, 198, 239
SspDI GGCGCC 1 cut(s) 164
TaqI TCGA 3 cut(s) 32, 84, 263
TasI AATT 1 cut(s) 222
TauI GCSGC 3 cut(s) 144, 197, 200
TseI GCWGC 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.