Rroxscaffold_4G00298620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000314
Physical Location & Seq
Forward (+)
18407367 .. 18408230
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298620.1

Sequence Viewer

Length: 759 bp
ATGGAGAAGAGGATCAACAAGATTGTTCTTCGACAAGAAAATTGTCTCGAACAAATAGCTGATTTCTCCACCGATCAAGCCAAATATGTGGCTACGGTCGGATGCATGGGGCAAGATATGGCCCATGATCATCCCTTTGATAAAAAGAAACAAGTTCATGATCAATTCAATTGTGACTCTGCTACTGGACGTCATCATGACCATACAAAGGGTCAAGAGCATGGTCAACATGACCCACTCAATTATCAATCAAGATGGAATATGGTGGCTGGATGTCATCATGATCATGCAAAGGGTCAAGGGCAAGGCCCACCTTACTATCATCAATTTAGCCTTGGCCATATTGGACGTCATGGTGGAGTTAATCAATTAAGCCACGGCCAACTTAATTATCAATTAAGTTGTGGTCTACAGAAGTCAATATGTGGCTTTAATAATCAATTCAACTTGAAGTTCTTCATATATTCTTCAAGGCCAAGTGGTGGCTTTGATATATGTGGAGGGCACATCTACAACCCATCTCCAAATTTCTTGCAAAAGAAATTTGTCTATGATACTAAACAGTCCATAGAGGCGTCTCAATATGATGCCTGGAAAGAATATAGAGGCAAACAAATATTTGATATGCCTATTTTCGAAGAAGAGATCGATTCATTGAATTTTGGTGATTCTAAATTTGATCTCGATGCGGAGCTAATCTATGATAAATATGATGATAATTATAATTTGATTATTGGTTTCAAAAATCATATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

29.05

Weight (kDa)

6.36

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AatII GACGTC 2 cut(s) 193, 352
AccB7I CCANNNNNTGG 1 cut(s) 482
AccI GTMKAC 1 cut(s) 409
AciI CCGC 1 cut(s) 689
AclWI GGATC 1 cut(s) 20
AcoI YGGCCR 2 cut(s) 337, 379
AcsI RAATTY 4 cut(s) 526, 542, 658, 674
AcyI GRCGYC 3 cut(s) 190, 349, 575
AfiI CCNNNNNNNGG 2 cut(s) 208, 482
AgsI TTSAA 6 cut(s) 169, 445, 451, 471, 658, 742
AjnI CCWGG 1 cut(s) 590
AluBI AGCT 2 cut(s) 59, 694
AluI AGCT 2 cut(s) 59, 694
Alw26I GTCTC 2 cut(s) 50, 582
AlwI GGATC 1 cut(s) 20
AoxI GGCC 5 cut(s) 120, 307, 337, 379, 473
ApoI RAATTY 4 cut(s) 526, 542, 658, 674
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 2 cut(s) 121, 308
AsuHPI GGTGA 1 cut(s) 677
AsuII TTCGAA 1 cut(s) 636
BaeGI GKGCMC 1 cut(s) 507
BalI TGGCCA 1 cut(s) 339
BccI CCATC 2 cut(s) 249, 526
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 592
BclI TGATCA 3 cut(s) 127, 160, 283
BcoDI GTCTC 2 cut(s) 50, 582
BfmI CTRYAG 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 121, 308
BmrFI CCNGG 1 cut(s) 592
BmsI GCATC 3 cut(s) 92, 577, 676
Bpu14I TTCGAA 1 cut(s) 636
Bsa29I ATCGAT 1 cut(s) 648
BsaHI GRCGYC 3 cut(s) 190, 349, 575
BsaJI CCNNGG 2 cut(s) 334, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 482
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 592
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 2 cut(s) 334, 376
BseGI GGATG 3 cut(s) 107, 130, 278
BseLI CCNNNNNNNGG 2 cut(s) 208, 482
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 5 cut(s) 122, 309, 339, 381, 475
BshVI ATCGAT 1 cut(s) 648
BsiEI CGRYCG 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 208, 482
BsmAI GTCTC 2 cut(s) 50, 582
BsmBI CGTCTC 1 cut(s) 582
BsnI GGCC 5 cut(s) 122, 309, 339, 381, 475
Bsp119I TTCGAA 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
BspACI CCGC 1 cut(s) 689
BspANI GGCC 5 cut(s) 122, 309, 339, 381, 475
BspDI ATCGAT 1 cut(s) 648
BspHI TCATGA 3 cut(s) 157, 196, 280
BspPI GGATC 1 cut(s) 20
BspT104I TTCGAA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 334, 376
BssMI GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
BssNI GRCGYC 3 cut(s) 190, 349, 575
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 592
Bst4CI ACNGT 2 cut(s) 97, 564
Bst6I CTCTTC 2 cut(s) 2, 636
BstACI GRCGYC 3 cut(s) 190, 349, 575
BstBI TTCGAA 1 cut(s) 636
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 3 cut(s) 107, 130, 278
BstKTI GATC 7 cut(s) 15, 76, 130, 163, 286, 648, 682
BstMAI GTCTC 2 cut(s) 50, 582
BstMBI GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 1 cut(s) 592
BstSCI CCNGG 1 cut(s) 590
BstSFI CTRYAG 1 cut(s) 410
BstSLI GKGCMC 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 5 cut(s) 122, 309, 339, 381, 475
BsuTUI ATCGAT 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 3 cut(s) 107, 130, 278
CciI TCATGA 3 cut(s) 157, 196, 280
Cfr13I GGNCC 2 cut(s) 121, 308
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 1 cut(s) 564
CviAII CATG 9 cut(s) 106, 125, 158, 197, 221, 230, 281, 287, 353
DpnI GATC 7 cut(s) 14, 75, 129, 162, 285, 647, 681
DpnII GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
EaeI YGGCCR 2 cut(s) 337, 379
Eam1104I CTCTTC 2 cut(s) 2, 636
EarI CTCTTC 2 cut(s) 2, 636
Eco130I CCWWGG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 582
FaeI CATG 9 cut(s) 109, 128, 161, 200, 224, 233, 284, 290, 356
FatI CATG 9 cut(s) 105, 124, 157, 196, 220, 229, 280, 286, 352
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 3 cut(s) 127, 160, 283
FblI GTMKAC 1 cut(s) 409
FokI GGATG 3 cut(s) 114, 117, 285
HaeIII GGCC 5 cut(s) 122, 309, 339, 381, 475
HgaI GACGC 1 cut(s) 564
Hin1I GRCGYC 3 cut(s) 190, 349, 575
Hin1II CATG 9 cut(s) 109, 128, 161, 200, 224, 233, 284, 290, 356
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 3 cut(s) 176, 650, 668
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 2 cut(s) 227, 410
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 7 cut(s) 47, 158, 197, 215, 252, 281, 683
Hpy8I GTNNAC 2 cut(s) 227, 410
HpyCH4III ACNGT 2 cut(s) 97, 564
HpyCH4IV ACGT 2 cut(s) 190, 349
HpyCH4V TGCA 3 cut(s) 105, 290, 535
HpySE526I ACGT 2 cut(s) 190, 349
Hsp92I GRCGYC 3 cut(s) 190, 349, 575
Hsp92II CATG 9 cut(s) 109, 128, 161, 200, 224, 233, 284, 290, 356
Ksp22I TGATCA 3 cut(s) 127, 160, 283
Kzo9I GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
LmnI GCTCC 1 cut(s) 691
LpnPI CCDG 4 cut(s) 171, 255, 577, 604
LweI GCATC 3 cut(s) 92, 577, 676
MaeII ACGT 2 cut(s) 190, 349
MaeIII GTNAC 1 cut(s) 173
MalI GATC 7 cut(s) 14, 75, 129, 162, 285, 647, 681
MboI GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
MboII GAAGA 6 cut(s) 19, 20, 448, 459, 650, 653
MfeI CAATTG 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 507
MlsI TGGCCA 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 3, 494, 565, 599
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 339
MseI TTAA 5 cut(s) 363, 371, 387, 398, 432
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 592
MunI CAATTG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 592
NdeI CATATG 1 cut(s) 750
NdeII GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
NlaIII CATG 9 cut(s) 109, 128, 161, 200, 224, 233, 284, 290, 356
NmuCI GTSAC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 107
NspV TTCGAA 1 cut(s) 636
PagI TCATGA 3 cut(s) 157, 196, 280
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 650, 668
PflMI CCANNNNNTGG 1 cut(s) 482
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PsiI TTATAA 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 590
PspGI CCWGG 1 cut(s) 590
PspPI GGNCC 2 cut(s) 121, 308
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 5 cut(s) 363, 371, 387, 398, 432
Sau3AI GATC 7 cut(s) 12, 73, 127, 160, 283, 645, 679
Sau96I GGNCC 2 cut(s) 121, 308
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 592
SduI GDGCHC 1 cut(s) 507
SetI ASST 5 cut(s) 61, 193, 316, 352, 696
SfaNI GCATC 3 cut(s) 92, 577, 676
SfcI CTRYAG 1 cut(s) 410
SfuI TTCGAA 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 285
SsiI CCGC 1 cut(s) 689
SspI AATATT 1 cut(s) 618
StyD4I CCNGG 1 cut(s) 590
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 97, 564
TaiI ACGT 2 cut(s) 193, 352
TaqI TCGA 5 cut(s) 31, 48, 636, 648, 684
TfiI GAWTC 2 cut(s) 650, 668
Tru1I TTAA 5 cut(s) 363, 371, 387, 398, 432
Tru9I TTAA 5 cut(s) 363, 371, 387, 398, 432
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 146, 448, 642
Van91I CCANNNNNTGG 1 cut(s) 482
XapI RAATTY 4 cut(s) 526, 542, 658, 674
XmiI GTMKAC 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 455
ZraI GACGTC 2 cut(s) 191, 350
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.