RLG00000007850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000314
Physical Location & Seq
Forward (+)
21949844 .. 21950545
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007850

Sequence Viewer

Length: 423 bp
ATGGGGGGCAAGACTGGCCATGATCAATCTCCTGATCATCCGAAGCGGCTTAGTGAATCAACAGGAAAATACGAGAGCCGGGAAGTAATTAAACGTGGTCTAGTGGATCAATTGGCTATTTACAACAAAGTTGGACCACGAGGTGGCTTTATTCAAAAAGCTATTAATCTATATAAGTCACACGGCCAGGAAGAGGACAAATGCGGCAATCATATTGGTCAAACACAAGACCATGGCAATCAATATGGTTGTCAATTAAGAGTTATTCCCAGCCAACGTAATTGTAGCTTTCTTCGGGGCACATATATTCAACAGCTAAGCAGTGGTTTTGATATATGTGGAAGATATATTCGCGTCCCAAATTTTGAGAATGGCCAAACTCAGTATTCAAGTGGCTGGTTTATCATAATGGGCAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

8.93

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AccII CGCG 1 cut(s) 354
AciI CCGC 2 cut(s) 46, 204
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 3 cut(s) 16, 184, 373
AcsI RAATTY 1 cut(s) 361
AdeI CACNNNGTG 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 143, 193
AgsI TTSAA 3 cut(s) 155, 311, 390
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 3 cut(s) 161, 288, 316
AluI AGCT 3 cut(s) 161, 288, 316
AlwI GGATC 1 cut(s) 114
AoxI GGCC 3 cut(s) 16, 184, 373
ApeKI GCWGC 1 cut(s) 414
ApoI RAATTY 1 cut(s) 361
AseI ATTAAT 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 2 cut(s) 18, 375
BauI CACGAG 1 cut(s) 138
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 2 cut(s) 22, 34
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 101
BisI GCNGC 3 cut(s) 47, 205, 415
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 3 cut(s) 48, 206, 416
Bme1390I CCNGG 2 cut(s) 80, 188
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 2 cut(s) 80, 188
Bpu1102I GCTNAGC 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 193
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 143, 193
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 3 cut(s) 18, 186, 375
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 143, 193
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 3 cut(s) 18, 186, 375
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 22, 34, 106
Bsp1720I GCTNAGC 1 cut(s) 317
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 46, 204
BspANI GGCC 3 cut(s) 18, 186, 375
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 1 cut(s) 354
BspPI GGATC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 3 cut(s) 22, 34, 106
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 50, 317, 381
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 354
BstKTI GATC 3 cut(s) 25, 37, 109
BstMBI GATC 3 cut(s) 22, 34, 106
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 78, 186
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 354
BsuRI GGCC 3 cut(s) 18, 186, 375
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 1 cut(s) 343
CviAII CATG 2 cut(s) 20, 233
DdeI CTNAG 3 cut(s) 50, 317, 381
DpnI GATC 3 cut(s) 24, 36, 108
DpnII GATC 3 cut(s) 22, 34, 106
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 3 cut(s) 16, 184, 373
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 23, 236
FaqI GGGAC 1 cut(s) 341
FatI CATG 2 cut(s) 19, 232
FbaI TGATCA 2 cut(s) 22, 34
Fnu4HI GCNGC 3 cut(s) 47, 205, 415
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 3 cut(s) 47, 205, 415
FspBI CTAG 1 cut(s) 101
GluI GCNGC 3 cut(s) 47, 205, 415
GsaI CCCAGC 1 cut(s) 273
HaeIII GGCC 3 cut(s) 18, 186, 375
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 343
Hin1II CATG 2 cut(s) 23, 236
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 94, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 3 cut(s) 50, 317, 381
HpySE526I ACGT 2 cut(s) 94, 277
Hsp92II CATG 2 cut(s) 23, 236
Ksp22I TGATCA 2 cut(s) 22, 34
Kzo9I GATC 3 cut(s) 22, 34, 106
LpnPI CCDG 7 cut(s) 45, 48, 92, 173, 200, 283, 382
MaeI CTAG 1 cut(s) 101
MaeII ACGT 2 cut(s) 94, 277
MaeIII GTNAC 1 cut(s) 177
MalI GATC 3 cut(s) 24, 36, 108
MboI GATC 3 cut(s) 22, 34, 106
MboII GAAGA 3 cut(s) 203, 284, 354
MfeI CAATTG 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 302
MlsI TGGCCA 2 cut(s) 18, 375
MluCI AATT 5 cut(s) 87, 110, 254, 280, 361
MluNI TGGCCA 2 cut(s) 18, 375
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 2 cut(s) 134, 187
Mox20I TGGCCA 2 cut(s) 18, 375
MscI TGGCCA 2 cut(s) 18, 375
MseI TTAA 3 cut(s) 90, 165, 257
Msp20I TGGCCA 2 cut(s) 18, 375
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 80, 188
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 15
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 232
NdeII GATC 3 cut(s) 22, 34, 106
NlaIII CATG 2 cut(s) 23, 236
NmuCI GTSAC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 3 cut(s) 48, 206, 416
PshBI ATTAAT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 186
PspPI GGNCC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 90, 165, 257
SatI GCNGC 3 cut(s) 47, 205, 415
Sau3AI GATC 3 cut(s) 22, 34, 106
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 80, 188
SduI GDGCHC 1 cut(s) 302
SetI ASST 6 cut(s) 97, 145, 163, 280, 290, 318
SinI GGWCC 1 cut(s) 134
Sse9I AATT 5 cut(s) 87, 110, 254, 280, 361
SsiI CCGC 2 cut(s) 46, 204
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 78, 186
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 2 cut(s) 97, 280
TasI AATT 5 cut(s) 87, 110, 254, 280, 361
TauI GCSGC 2 cut(s) 49, 207
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 90, 165, 257
Tru9I TTAA 3 cut(s) 90, 165, 257
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 177
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 1 cut(s) 361
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.