Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021462.1

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

11812 .. 13479

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021462.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgcttgtttttctcaagaagaagtgcaaattcctaaacttctcaaagcgcaaggcctccagttacgagcctcatgaaactgatagtgacgctgctgttgcagatgacgaggtgacaataaaaggctatgtgcgcattcctgtcccagagaatgcgagcatacaggagagaattgctatctttcagcagaacactactttgttctatgcgaagtttgaaaatgtccttgcggaacagcaaaacaggatggaggcacagcaaaagacctgggagctttggcaagagtcgcagcagacctatgaacagttggctggcatggcccaaccaacccaagaaaaccatcagcagattgtgaatgttgttgcgacccagcacaagcagacctcatcggagttcatgaccttgctcaaggaaggttctagcttggctactcaagtcagttcacatcaaggcgaattagaacgtcaagaaaccgctcgcaaagaggttgtttctaagactgaattgtctataggtggcaatcaatccaagggtctcactggtgaatcacagccttacacagaggttgtgcatggagaagatggtcaacaagattgttcttctgacaaaattgtctctgaacaaatacttgacttctccaatgatcaagccaaatatatggctactgatcagatgcctggggggcaagacatagcccacgttcatgctggtgatcaccaaaagcaagttcttaaggattctaatagccaagcggtgattaaatatgatctaggtgaccaaattgtcatttaccaggaagaacagcctccagaagaaacttgccaagaaagatgtggccatgctactagacagaatatcaattcatcaaattttggtcattctaaatatgatctcgatgcaaagccaatatatgatgaatacgatgacaattacaatttaattattggttccagaaatcatatgcaggggttcaagttctttgcgtcttttgatcatgagaattcaggccaacaagtggtcaaatgcaaaagccaacctgtggctaattctgaagacaccatgttctatgacatggtgctccttcattgggagcgacattctgatcctgacaagagttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

373

Amino Acids

42.39

Weight (kDa)

5.01

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	505, 611, 782
Acc16I	TGCGCA	1 cut(s)	134
AccB7I	CCANNNNNTGG	2 cut(s)	1015, 1039
AccBSI	CCGCTC	1 cut(s)	476
AciI	CCGC	3 cut(s)	230, 474, 752
AclWI	GGATC	1 cut(s)	1097
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	3 cut(s)	29, 868, 1000
AcuI	CTGAAG	1 cut(s)	1071
AfiI	CCNNNNNNNGG	3 cut(s)	1015, 1039, 1087
AflII	CTTAAG	1 cut(s)	731
AgsI	TTSAA	2 cut(s)	218, 973
AjnI	CCWGG	3 cut(s)	266, 676, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AluBI	AGCT	2 cut(s)	274, 423
AluI	AGCT	2 cut(s)	274, 423
Alw21I	GWGCWC	1 cut(s)	1080
Alw26I	GTCTC	2 cut(s)	539, 619
AlwI	GGATC	1 cut(s)	1097
AoxI	GGCC	4 cut(s)	54, 318, 835, 1006
ApeKI	GCWGC	2 cut(s)	92, 289
ApoI	RAATTY	3 cut(s)	29, 868, 1000
AspLEI	GCGC	2 cut(s)	51, 135
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	6 cut(s)	124, 554, 707, 722, 766, 785
BalI	TGGCCA	1 cut(s)	837
BbsI	GAAGAC	1 cut(s)	1059
Bbv12I	GWGCWC	1 cut(s)	1080
BbvI	GCAGC	2 cut(s)	79, 301
BccI	CCATC	3 cut(s)	241, 348, 575
BciT130I	CCWGG	3 cut(s)	268, 678, 794
BclI	TGATCA	4 cut(s)	643, 667, 712, 991
BcoDI	GTCTC	2 cut(s)	539, 619
BfaI	CTAG	3 cut(s)	420, 770, 846
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	731
BglI	GCCNNNNNGGC	1 cut(s)	682
BisI	GCNGC	2 cut(s)	93, 290
BlsI	GCNGC	2 cut(s)	94, 291
Bme1390I	CCNGG	3 cut(s)	268, 678, 794
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	949
BmrFI	CCNGG	3 cut(s)	268, 678, 794
BmsI	GCATC	2 cut(s)	663, 886
BpiI	GAAGAC	1 cut(s)	1059
BpmI	CTGGAG	2 cut(s)	43, 792
BpuEI	CTTGAG	2 cut(s)	392, 417
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	3 cut(s)	267, 528, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	1015, 1039, 1087
Bse1I	ACTGG	2 cut(s)	60, 544
BseBI	CCWGG	3 cut(s)	268, 678, 794
BseDI	CCNNGG	3 cut(s)	267, 528, 677
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	1015, 1039, 1087
BseNI	ACTGG	2 cut(s)	60, 544
BseXI	GCAGC	2 cut(s)	79, 301
BseYI	CCCAGC	1 cut(s)	369
BshFI	GGCC	4 cut(s)	56, 320, 837, 1008
BsiHKAI	GWGCWC	1 cut(s)	1080
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	1015, 1039, 1087
BsmAI	GTCTC	2 cut(s)	539, 619
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	2 cut(s)	135, 157
BsnI	GGCC	4 cut(s)	56, 320, 837, 1008
Bso31I	GGTCTC	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	1080
Bsp143I	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
BspACI	CCGC	3 cut(s)	230, 474, 752
BspANI	GGCC	4 cut(s)	56, 320, 837, 1008
BspHI	TCATGA	3 cut(s)	73, 396, 994
BspLI	GGNNCC	1 cut(s)	949
BspPI	GGATC	1 cut(s)	1097
BspTI	CTTAAG	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	60, 544
BssECI	CCNNGG	3 cut(s)	267, 528, 677
BssMI	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	268, 678, 794
Bst4CI	ACNGT	1 cut(s)	306
BstAFI	CTTAAG	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	157, 313, 478
BstDEI	CTNAG	1 cut(s)	495
BstEII	GGTNACC	1 cut(s)	773
BstF5I	GGATG	1 cut(s)	252
BstHHI	GCGC	2 cut(s)	51, 135
BstKTI	GATC	7 cut(s)	646, 670, 715, 769, 892, 994, 1105
BstMAI	GTCTC	2 cut(s)	539, 619
BstMBI	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 132, 286, 317, 682
BstNI	CCWGG	3 cut(s)	268, 678, 794
BstPI	GGTNACC	1 cut(s)	773
BstSCI	CCNGG	3 cut(s)	266, 676, 792
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	79, 301
BstV2I	GAAGAC	1 cut(s)	1059
BstXI	CCANNNNNNTGG	1 cut(s)	658
BsuRI	GGCC	4 cut(s)	56, 320, 837, 1008
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	3 cut(s)	157, 313, 478
CciI	TCATGA	3 cut(s)	73, 396, 994
CfoI	GCGC	2 cut(s)	51, 135
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	2 cut(s)	98, 972
CviAII	CATG	9 cut(s)	74, 316, 397, 572, 704, 839, 995, 1060, 1072
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	7 cut(s)	645, 669, 714, 768, 891, 993, 1104
DpnII	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
DrdI	GACNNNNNNGTC	3 cut(s)	505, 611, 782
DseDI	GACNNNNNNGTC	3 cut(s)	505, 611, 782
EaeI	YGGCCR	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	1071
Eco91I	GGTNACC	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	773
EcoRI	GAATTC	1 cut(s)	1000
EcoRII	CCWGG	3 cut(s)	266, 676, 792
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	9 cut(s)	77, 319, 400, 575, 707, 842, 998, 1063, 1075
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	9 cut(s)	73, 315, 396, 571, 703, 838, 994, 1059, 1071
FauNDI	CATATG	1 cut(s)	960
FbaI	TGATCA	4 cut(s)	643, 667, 712, 991
Fnu4HI	GCNGC	2 cut(s)	93, 290
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	93, 290
FspAI	RTGCGCAY	1 cut(s)	134
FspBI	CTAG	3 cut(s)	420, 770, 846
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	2 cut(s)	50, 134
GluI	GCNGC	2 cut(s)	93, 290
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	2 cut(s)	43, 792
HaeIII	GGCC	4 cut(s)	56, 320, 837, 1008
HgaI	GACGC	2 cut(s)	98, 972
HhaI	GCGC	2 cut(s)	51, 135
Hin1II	CATG	9 cut(s)	77, 319, 400, 575, 707, 842, 998, 1063, 1075
Hin6I	GCGC	2 cut(s)	49, 133
HinP1I	GCGC	2 cut(s)	49, 133
HincII	GTYRAC	1 cut(s)	587
HindII	GTYRAC	1 cut(s)	587
HinfI	GANTC	3 cut(s)	284, 545, 737
HphI	GGTGA	6 cut(s)	124, 554, 707, 722, 766, 785
Hpy166II	GTNNAC	2 cut(s)	443, 587
Hpy188I	TCNGA	6 cut(s)	391, 604, 619, 672, 1051, 1102
Hpy188III	TCNNGA	9 cut(s)	16, 74, 397, 467, 809, 893, 951, 995, 1106
Hpy8I	GTNNAC	2 cut(s)	443, 587
HpyAV	CCTTC	2 cut(s)	407, 1091
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	2 cut(s)	463, 699
HpyCH4V	TGCA	6 cut(s)	27, 101, 571, 899, 964, 1026
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 132, 286, 317, 682
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	2 cut(s)	463, 699
Hsp92II	CATG	9 cut(s)	77, 319, 400, 575, 707, 842, 998, 1063, 1075
HspAI	GCGC	2 cut(s)	49, 133
Ksp22I	TGATCA	4 cut(s)	643, 667, 712, 991
Kzo9I	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
LmnI	GCTCC	3 cut(s)	271, 1083, 1090
Lsp1109I	GCAGC	2 cut(s)	79, 301
LweI	GCATC	2 cut(s)	663, 886
MaeI	CTAG	3 cut(s)	420, 770, 846
MaeII	ACGT	2 cut(s)	463, 699
MaeIII	GTNAC	4 cut(s)	62, 86, 112, 773
MalI	GATC	7 cut(s)	645, 669, 714, 768, 891, 993, 1104
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
MboII	GAAGA	6 cut(s)	31, 590, 591, 809, 824, 1064
MhlI	GDGCHC	1 cut(s)	1080
MlsI	TGGCCA	1 cut(s)	837
MluNI	TGGCCA	1 cut(s)	837
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	8 cut(s)	67, 81, 103, 244, 394, 478, 556, 816
Mox20I	TGGCCA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	3 cut(s)	732, 759, 938
MslI	CAYNNNNRTG	2 cut(s)	702, 708
Msp20I	TGGCCA	1 cut(s)	837
MspCI	CTTAAG	1 cut(s)	731
MspR9I	CCNGG	3 cut(s)	268, 678, 794
Mva1269I	GAATGC	2 cut(s)	135, 157
MvaI	CCWGG	3 cut(s)	268, 678, 794
MwoI	GCNNNNNNNGC	5 cut(s)	98, 132, 286, 317, 682
NdeI	CATATG	1 cut(s)	960
NdeII	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
NlaIII	CATG	9 cut(s)	77, 319, 400, 575, 707, 842, 998, 1063, 1075
NlaIV	GGNNCC	1 cut(s)	949
NmuCI	GTSAC	3 cut(s)	86, 112, 773
NsbI	TGCGCA	1 cut(s)	134
PagI	TCATGA	3 cut(s)	73, 396, 994
PceI	AGGCCT	1 cut(s)	56
PctI	GAATGC	2 cut(s)	135, 157
PfeI	GAWTC	2 cut(s)	545, 737
PflMI	CCANNNNNTGG	2 cut(s)	1015, 1039
PkrI	GCNGC	2 cut(s)	94, 291
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	3 cut(s)	266, 676, 792
PspEI	GGTNACC	1 cut(s)	773
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	3 cut(s)	266, 676, 792
PspN4I	GGNNCC	1 cut(s)	949
PspPI	GGNCC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	702, 708
SaqAI	TTAA	3 cut(s)	732, 759, 938
SatI	GCNGC	2 cut(s)	93, 290
Sau3AI	GATC	7 cut(s)	643, 667, 712, 766, 889, 991, 1102
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	268, 678, 794
SduI	GDGCHC	1 cut(s)	1080
SfaNI	GCATC	2 cut(s)	663, 886
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	2 cut(s)	702, 708
SmlI	CTYRAG	4 cut(s)	14, 407, 432, 731
SmoI	CTYRAG	4 cut(s)	14, 407, 432, 731
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	230, 474, 752
SspMI	CTAG	3 cut(s)	420, 770, 846
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	3 cut(s)	266, 676, 792
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	2 cut(s)	466, 702
TaqI	TCGA	1 cut(s)	894
TfiI	GAWTC	2 cut(s)	545, 737
Tru1I	TTAA	3 cut(s)	732, 759, 938
Tru9I	TTAA	3 cut(s)	732, 759, 938
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	3 cut(s)	86, 112, 773
TseI	GCWGC	2 cut(s)	92, 289
Tsp45I	GTSAC	3 cut(s)	86, 112, 773
TspDTI	ATGAA	7 cut(s)	90, 315, 385, 692, 852, 930, 1073
TspRI	CASTG	1 cut(s)	544
Van91I	CCANNNNNTGG	2 cut(s)	1015, 1039
Vha464I	CTTAAG	1 cut(s)	731
XapI	RAATTY	3 cut(s)	29, 868, 1000
XcmI	CCANNNNNNNNNTGG	2 cut(s)	704, 830
XspI	CTAG	3 cut(s)	420, 770, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.