Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000368.1

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

108653 .. 109960

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000368.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggtcaatgttgccaccactggcgatactgccattaatgatgagtttatgcctattcccatcccagagggggcaagcattaaggaacagctcgcgatcatcatgaccaacatcgagaggcataaagaaaagcgagccagggacatggccagtttgatcgcaaaaacagagcagaggtttcgcgattgggaccaagaaattgagcagaacgctcgagaagctagagaacaattccataagcctttcttgagcagcgacaaacagaccactcaacatgccgcgaacatcacatctgagttcacaaccttacgcgaggaaggttccagcttggctaattcgcagcaaggtaaattggaacgtcaaaaacttgcacgcgatgagattgtttctaagactgacttgcctataggtggcaatcaacctaatggcctcactggtgaatcacagccttatatagaggctacttatggagaagaggatcaacaagattgttcttctgataagaaaattgtctatgaacagatagctgatttctccactgatcaagccaaatacgtggctactgatcagatgcatggggggcaagatgcagcccatgttgattccctagatcaacagaagcatatgcataatcaatttaatttcaacttgaagttcttcaagtatgcttcaaggccaggcagtggctttgatatatgtggagggcacatctacaacccacgttgtaagaatgtccagaataattattctagtggccaagttgtccttcgcgactgtagatttgagtatcatcaatacaagttaactcttgtttacaattatctagcaagtgaagctcttgatgtggagaattcggaccagcaagtggtcgtctataatggccaatctgtggctaatcctgaagacaccatgttctatgacatggtagttggcgacaaagctgatcttggaacatcttcatctccaaaagtgcaattgaagatcatgcctcgtcaaccaacaaagatatttggggagcaagaatacccctctcacgagccaaattcctccaaattcttcagcaagaagtatctttgttcttttcctacaagctttcataggagggatttttacattacaaattttgatacatcgaagcttggaatgaagcatagatggcctccctcgtggtattctagaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

394

Amino Acids

45.05

Weight (kDa)

5.78

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	683, 865, 889
AccII	CGCG	6 cut(s)	95, 183, 281, 312, 375, 771
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	3 cut(s)	147, 754, 880
AcsI	RAATTY	4 cut(s)	850, 1042, 1052, 1120
AcuI	CTGAAG	2 cut(s)	921, 1042
AfiI	CCNNNNNNNGG	5 cut(s)	70, 410, 683, 865, 889
AgsI	TTSAA	5 cut(s)	646, 652, 661, 672, 979
AjnI	CCWGG	2 cut(s)	137, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AluBI	AGCT	8 cut(s)	91, 221, 327, 527, 836, 941, 1092, 1138
AluI	AGCT	8 cut(s)	91, 221, 327, 527, 836, 941, 1092, 1138
AlwI	GGATC	1 cut(s)	486
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	6 cut(s)	147, 427, 674, 754, 880, 1157
ApeKI	GCWGC	3 cut(s)	252, 340, 590
ApoI	RAATTY	4 cut(s)	850, 1042, 1052, 1120
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AseI	ATTAAT	1 cut(s)	36
Asp700I	GAANNNNTTC	2 cut(s)	656, 955
AspS9I	GGNCC	2 cut(s)	190, 856
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	190, 856
BaeGI	GKGCMC	1 cut(s)	708
BalI	TGGCCA	3 cut(s)	149, 756, 882
BauI	CACGAG	2 cut(s)	1034, 1165
BbsI	GAAGAC	1 cut(s)	909
BbvI	GCAGC	3 cut(s)	264, 352, 602
BccI	CCATC	2 cut(s)	68, 1149
BcgI	CGANNNNNNTGC	4 cut(s)	161, 194, 195, 228
BciT130I	CCWGG	2 cut(s)	139, 678
BclI	TGATCA	2 cut(s)	541, 565
BfaI	CTAG	5 cut(s)	222, 608, 750, 824, 1176
BfmI	CTRYAG	2 cut(s)	405, 775
BisI	GCNGC	4 cut(s)	253, 279, 341, 591
BlsI	GCNGC	4 cut(s)	254, 280, 342, 592
Bme1390I	CCNGG	2 cut(s)	139, 678
Bme18I	GGWCC	2 cut(s)	190, 856
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	190, 856
BmiI	GGNNCC	2 cut(s)	191, 322
BmrFI	CCNGG	2 cut(s)	139, 678
BmsI	GCATC	2 cut(s)	561, 577
BpiI	GAAGAC	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 410, 683, 865, 889
Bse1I	ACTGG	3 cut(s)	25, 150, 439
BseBI	CCWGG	2 cut(s)	139, 678
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	5 cut(s)	70, 410, 683, 865, 889
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	3 cut(s)	25, 150, 439
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	3 cut(s)	264, 352, 602
Bsh1236I	CGCG	6 cut(s)	95, 183, 281, 312, 375, 771
BshFI	GGCC	6 cut(s)	149, 429, 676, 756, 882, 1159
BsiHKCI	CYCGRG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	155, 203
BslI	CCNNNNNNNGG	5 cut(s)	70, 410, 683, 865, 889
BsmFI	GGGAC	2 cut(s)	155, 203
BsnI	GGCC	6 cut(s)	149, 429, 676, 756, 882, 1159
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
Bsp68I	TCGCGA	3 cut(s)	95, 183, 771
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	6 cut(s)	149, 429, 676, 756, 882, 1159
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	6 cut(s)	95, 183, 281, 312, 375, 771
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	191, 322
BspPI	GGATC	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	25, 150, 439
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
BssSI	CACGAG	2 cut(s)	1034, 1165
Bst2BI	CACGAG	2 cut(s)	1034, 1165
Bst2UI	CCWGG	2 cut(s)	139, 678
Bst4CI	ACNGT	1 cut(s)	776
Bst6I	CTCTTC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	4 cut(s)	76, 93, 135, 373
BstDEI	CTNAG	2 cut(s)	294, 390
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	6 cut(s)	95, 183, 281, 312, 375, 771
BstKTI	GATC	8 cut(s)	99, 159, 481, 544, 568, 613, 946, 984
BstMBI	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 580, 833, 1156
BstNI	CCWGG	2 cut(s)	139, 678
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	137, 676
BstSFI	CTRYAG	2 cut(s)	405, 775
BstSLI	GKGCMC	1 cut(s)	708
BstUI	CGCG	6 cut(s)	95, 183, 281, 312, 375, 771
BstV1I	GCAGC	3 cut(s)	264, 352, 602
BstV2I	GAAGAC	1 cut(s)	909
BstXI	CCANNNNNNTGG	2 cut(s)	145, 556
BsuRI	GGCC	6 cut(s)	149, 429, 676, 756, 882, 1159
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	4 cut(s)	18, 432, 537, 688
BtuMI	TCGCGA	3 cut(s)	95, 183, 771
Cac8I	GCNNGC	4 cut(s)	76, 93, 135, 373
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	190, 856
CviAII	CATG	8 cut(s)	103, 145, 275, 575, 596, 910, 922, 985
DdeI	CTNAG	2 cut(s)	294, 390
DpnI	GATC	8 cut(s)	98, 158, 480, 543, 567, 612, 945, 983
DpnII	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
EaeI	YGGCCR	3 cut(s)	147, 754, 880
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	190, 856
Eco57I	CTGAAG	2 cut(s)	921, 1042
Eco88I	CYCGRG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	850
EcoRII	CCWGG	2 cut(s)	137, 676
EcoT22I	ATGCAT	2 cut(s)	576, 630
FaeI	CATG	8 cut(s)	106, 148, 278, 578, 599, 913, 925, 988
FalI	AAGNNNNNCTT	8 cut(s)	230, 262, 383, 415, 750, 782, 930, 962
FaqI	GGGAC	2 cut(s)	155, 203
FatI	CATG	8 cut(s)	102, 144, 274, 574, 595, 909, 921, 984
FauNDI	CATATG	1 cut(s)	624
FbaI	TGATCA	2 cut(s)	541, 565
Fnu4HI	GCNGC	4 cut(s)	253, 279, 341, 591
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	253, 279, 341, 591
FspBI	CTAG	5 cut(s)	222, 608, 750, 824, 1176
GluI	GCNGC	4 cut(s)	253, 279, 341, 591
HaeIII	GGCC	6 cut(s)	149, 429, 676, 756, 882, 1159
Hin1II	CATG	8 cut(s)	106, 148, 278, 578, 599, 913, 925, 988
HincII	GTYRAC	2 cut(s)	804, 995
HindII	GTYRAC	2 cut(s)	804, 995
HindIII	AAGCTT	2 cut(s)	1090, 1136
HinfI	GANTC	2 cut(s)	440, 602
HpaI	GTTAAC	1 cut(s)	804
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	4 cut(s)	300, 804, 814, 995
Hpy188I	TCNGA	4 cut(s)	295, 499, 570, 856
Hpy8I	GTNNAC	4 cut(s)	300, 804, 814, 995
HpyAV	CCTTC	2 cut(s)	311, 776
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4IV	ACGT	3 cut(s)	358, 555, 721
HpyCH4V	TGCA	5 cut(s)	371, 574, 590, 628, 973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 580, 833, 1156
HpyF3I	CTNAG	2 cut(s)	294, 390
HpySE526I	ACGT	3 cut(s)	358, 555, 721
Hsp92II	CATG	8 cut(s)	106, 148, 278, 578, 599, 913, 925, 988
Ksp22I	TGATCA	2 cut(s)	541, 565
KspAI	GTTAAC	1 cut(s)	804
Kzo9I	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
LmnI	GCTCC	1 cut(s)	1015
Lsp1109I	GCAGC	3 cut(s)	264, 352, 602
LweI	GCATC	2 cut(s)	561, 577
MaeI	CTAG	5 cut(s)	222, 608, 750, 824, 1176
MaeII	ACGT	3 cut(s)	358, 555, 721
MalI	GATC	8 cut(s)	98, 158, 480, 543, 567, 612, 945, 983
MboI	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
MboII	GAAGA	7 cut(s)	485, 486, 649, 914, 948, 991, 1048
MfeI	CAATTG	1 cut(s)	974
MhlI	GDGCHC	1 cut(s)	708
MlsI	TGGCCA	3 cut(s)	149, 756, 882
MluNI	TGGCCA	3 cut(s)	149, 756, 882
Mox20I	TGGCCA	3 cut(s)	149, 756, 882
Mph1103I	ATGCAT	2 cut(s)	576, 630
MroXI	GAANNNNTTC	2 cut(s)	656, 955
MscI	TGGCCA	3 cut(s)	149, 756, 882
MseI	TTAA	4 cut(s)	36, 81, 639, 803
Msp20I	TGGCCA	3 cut(s)	149, 756, 882
MspR9I	CCNGG	2 cut(s)	139, 678
MunI	CAATTG	1 cut(s)	974
MvaI	CCWGG	2 cut(s)	139, 678
MvnI	CGCG	6 cut(s)	95, 183, 281, 312, 375, 771
MwoI	GCNNNNNNNGC	4 cut(s)	218, 580, 833, 1156
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
NlaIII	CATG	8 cut(s)	106, 148, 278, 578, 599, 913, 925, 988
NlaIV	GGNNCC	2 cut(s)	191, 322
NruI	TCGCGA	3 cut(s)	95, 183, 771
NsiI	ATGCAT	2 cut(s)	576, 630
NspI	RCATGY	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	213
PagI	TCATGA	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	656, 955
PfeI	GAWTC	2 cut(s)	440, 602
PflMI	CCANNNNNTGG	3 cut(s)	683, 865, 889
PkrI	GCNGC	4 cut(s)	254, 280, 342, 592
Ppu21I	YACGTR	1 cut(s)	556
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	137, 676
PspGI	CCWGG	2 cut(s)	137, 676
PspN4I	GGNNCC	2 cut(s)	191, 322
PspPI	GGNCC	2 cut(s)	190, 856
RruI	TCGCGA	3 cut(s)	95, 183, 771
SaqAI	TTAA	4 cut(s)	36, 81, 639, 803
SatI	GCNGC	4 cut(s)	253, 279, 341, 591
Sau3AI	GATC	8 cut(s)	96, 156, 478, 541, 565, 610, 943, 981
Sau96I	GGNCC	2 cut(s)	190, 856
ScrFI	CCNGG	2 cut(s)	139, 678
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	561, 577
SfcI	CTRYAG	2 cut(s)	405, 775
Sfr274I	CTCGAG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	190, 856
SlaI	CTCGAG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	213, 247
SmoI	CTYRAG	2 cut(s)	213, 247
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	5 cut(s)	222, 608, 750, 824, 1176
StyD4I	CCNGG	2 cut(s)	137, 676
TaaI	ACNGT	1 cut(s)	776
TaiI	ACGT	3 cut(s)	361, 558, 724
TaqI	TCGA	3 cut(s)	114, 214, 1133
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	440, 602
Tru1I	TTAA	4 cut(s)	36, 81, 639, 803
Tru9I	TTAA	4 cut(s)	36, 81, 639, 803
TscAI	CASTG	4 cut(s)	25, 439, 544, 688
TseI	GCWGC	3 cut(s)	252, 340, 590
TspDTI	ATGAA	4 cut(s)	531, 948, 1085, 1160
TspRI	CASTG	4 cut(s)	25, 439, 544, 688
Van91I	CCANNNNNTGG	3 cut(s)	683, 865, 889
VpaK11BI	GGWCC	2 cut(s)	190, 856
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	4 cut(s)	850, 1042, 1052, 1120
XbaI	TCTAGA	1 cut(s)	1175
XceI	RCATGY	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	213
XmnI	GAANNNNTTC	2 cut(s)	656, 955
XspI	CTAG	5 cut(s)	222, 608, 750, 824, 1176
Zsp2I	ATGCAT	2 cut(s)	576, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.