Rmu_sc0010598.1_g000003

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010598.1
Physical Location & Seq
Reverse (-)
6482 .. 7779
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010598.1_g000003.1.cds

Sequence Viewer

Length: 1227 bp
atgaagaaagataatgtggaagcgagactgaggcaggaggacatttttagcacgatctggaagcttgagcgtagatacggcaagcgcatgagcagaggtggcacgatgtgcaacaaattcgagaaaaccatcggcagattcttggctactcaagtcaattcacatcaagacgaattggaacgtcaagaagccactagagaagagattgtttctgagactgaattgcctataggtggcaatcaatccaagggtctcactggtgaatcacagccttacacagaggctgtgcatggagaagatggtcaacaagattgttcttctgacaagaaagttgtctctgaacatgtacttgacttctccaatgatcaagccaaatatgtggctactgatcagatgcctggggggcaagacgtagcccacgttcatgctggtgatcaccaaaagaaagttcttaaggattctaatagccaagcggtgattaaatatgatctaggcgaccgaattgtcgtttaccaggaagaaaagcctccaaaagaaaattgtcaaaaaagatgtggccttgctactggacgtcgtcatgaccaaggaggtaatcaaaaccatgatcaacttaattgtcaattaagttgctatttgcctactgggtttcatcataatcaaaagcatggtcaaaggcatggcccaccttattgtcatcaatttaaccttagccatgctattggacgtcatggtgaaggagatcaaaatcatggccaacttaattatcaattaagttgtggtcttgaaaaaccaatatgtggctttattaatcaattctacttcaatttcttcatcaatgcttcaaggccaagcggtggctttgatatatgtggaggatacatctgcaacccacgttgtacgaatggccagaacaattttagtggccagtttgtccttcgcgattgtaagtttgagtatcatcaatacacgttaagtcttgtttatagttattcaaatttcttgcaaaaggaatttgtctatgatactatacagtccatggaggcgtctcaatatgatgcctggaaaaaatatagaggcaaaaaaatatctgatatgtctatctttgaagaagagatcaattcaccactctttggtgactctaagtttgatctcgatgcggagccaatctatgatgaatatgatgatagttacaatttgcttagtggttccaaaagtcatatgcagtag

Protein Analysis

408

Amino Acids

46.61

Weight (kDa)

5.98

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AatII GACGTC 2 cut(s) 574, 727
AccB7I CCANNNNNTGG 3 cut(s) 797, 854, 1130
AccII CGCG 1 cut(s) 939
AciI CCGC 3 cut(s) 473, 852, 1157
AcoI YGGCCR 3 cut(s) 751, 904, 922
AcsI RAATTY 3 cut(s) 116, 994, 1010
AcyI GRCGYC 3 cut(s) 571, 724, 1043
AdeI CACNNNGTG 1 cut(s) 108
AfaI GTAC 2 cut(s) 348, 898
AfiI CCNNNNNNNGG 4 cut(s) 233, 797, 854, 1130
AflII CTTAAG 1 cut(s) 452
AflIII ACRYGT 2 cut(s) 343, 966
AgsI TTSAA 5 cut(s) 785, 823, 843, 993, 1106
AjnI CCWGG 3 cut(s) 397, 513, 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw26I GTCTC 5 cut(s) 19, 209, 257, 340, 1050
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 6 cut(s) 556, 679, 751, 845, 904, 922
ApoI RAATTY 3 cut(s) 116, 994, 1010
ArsI GACNNNNNNTTYG 4 cut(s) 652, 684, 1127, 1159
AseI ATTAAT 1 cut(s) 807
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 7 cut(s) 272, 428, 443, 487, 743, 1113, 1145
BalI TGGCCA 3 cut(s) 753, 906, 924
BccI CCATC 2 cut(s) 137, 293
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 3 cut(s) 399, 515, 1060
BciVI GTATCC 1 cut(s) 869
BclI TGATCA 4 cut(s) 364, 388, 433, 604
BcoDI GTCTC 5 cut(s) 19, 209, 257, 340, 1050
BfaI CTAG 2 cut(s) 195, 491
BfmI CTRYAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 452
BfuI GTATCC 1 cut(s) 869
BglI GCCNNNNNGGC 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 399, 515, 1060
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 2 cut(s) 1161, 1207
BmrFI CCNGG 3 cut(s) 399, 515, 1060
BmrI ACTGGG 1 cut(s) 651
BmsI GCATC 3 cut(s) 384, 1045, 1144
BmuI ACTGGG 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 86, 135
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 3 cut(s) 571, 724, 1043
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 246, 398, 583, 1035
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 797, 854, 1130
Bse1I ACTGG 4 cut(s) 262, 571, 646, 925
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 3 cut(s) 399, 515, 1060
BseDI CCNNGG 4 cut(s) 246, 398, 583, 1035
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 4 cut(s) 233, 797, 854, 1130
BseMII CTCAG 2 cut(s) 20, 204
BseNI ACTGG 4 cut(s) 262, 571, 646, 925
Bsh1236I CGCG 1 cut(s) 939
Bsh1285I CGRYCG 1 cut(s) 499
BshFI GGCC 6 cut(s) 558, 681, 753, 847, 906, 924
BsiEI CGRYCG 1 cut(s) 499
BslI CCNNNNNNNGG 4 cut(s) 233, 797, 854, 1130
BsmAI GTCTC 5 cut(s) 19, 209, 257, 340, 1050
BsmBI CGTCTC 1 cut(s) 1050
BsnI GGCC 6 cut(s) 558, 681, 753, 847, 906, 924
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
Bsp19I CCATGG 1 cut(s) 1035
Bsp68I TCGCGA 1 cut(s) 939
BspACI CCGC 3 cut(s) 473, 852, 1157
BspANI GGCC 6 cut(s) 558, 681, 753, 847, 906, 924
BspCNI CTCAG 2 cut(s) 21, 205
BspFNI CGCG 1 cut(s) 939
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 1161, 1207
BspTI CTTAAG 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 4 cut(s) 262, 571, 646, 925
BssECI CCNNGG 4 cut(s) 246, 398, 583, 1035
BssMI GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
BssNI GRCGYC 3 cut(s) 571, 724, 1043
BssT1I CCWWGG 3 cut(s) 246, 583, 1035
Bst2UI CCWGG 3 cut(s) 399, 515, 1060
Bst4CI ACNGT 1 cut(s) 1032
Bst6I CTCTTC 2 cut(s) 195, 1104
BstACI GRCGYC 3 cut(s) 571, 724, 1043
BstAFI CTTAAG 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 5 cut(s) 29, 213, 707, 1140, 1199
BstDSI CCRYGG 1 cut(s) 1035
BstFNI CGCG 1 cut(s) 939
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 9 cut(s) 57, 367, 391, 436, 490, 607, 742, 1116, 1150
BstMAI GTCTC 5 cut(s) 19, 209, 257, 340, 1050
BstMBI GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
BstMCI CGRYCG 1 cut(s) 499
BstMWI GCNNNNNNNGC 3 cut(s) 99, 108, 403
BstNI CCWGG 3 cut(s) 399, 515, 1060
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 3 cut(s) 397, 513, 1058
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 939
BstXI CCANNNNNNTGG 2 cut(s) 379, 719
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 6 cut(s) 558, 681, 753, 847, 906, 924
BtgI CCRYGG 1 cut(s) 1035
BtsIMutI CAGTG 1 cut(s) 255
BtuMI TCGCGA 1 cut(s) 939
Cac8I GCNNGC 1 cut(s) 83
CaiI CAGNNNCTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 680
CseI GACGC 1 cut(s) 1032
Csp6I GTAC 2 cut(s) 347, 897
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviQI GTAC 2 cut(s) 347, 897
DdeI CTNAG 5 cut(s) 29, 213, 707, 1140, 1199
DpnI GATC 9 cut(s) 56, 366, 390, 435, 489, 606, 741, 1115, 1149
DpnII GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
DraIII CACNNNGTG 1 cut(s) 108
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 3 cut(s) 751, 904, 922
Eam1104I CTCTTC 2 cut(s) 195, 1104
EarI CTCTTC 2 cut(s) 195, 1104
Eco130I CCWWGG 3 cut(s) 246, 583, 1035
Eco31I GGTCTC 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 397, 513, 1058
EcoT14I CCWWGG 3 cut(s) 246, 583, 1035
ErhI CCWWGG 3 cut(s) 246, 583, 1035
Esp3I CGTCTC 1 cut(s) 1050
FauNDI CATATG 1 cut(s) 1218
FbaI TGATCA 4 cut(s) 364, 388, 433, 604
FspBI CTAG 2 cut(s) 195, 491
GlaI GCGC 1 cut(s) 86
HaeIII GGCC 6 cut(s) 558, 681, 753, 847, 906, 924
HgaI GACGC 1 cut(s) 1032
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 3 cut(s) 571, 724, 1043
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HincII GTYRAC 1 cut(s) 305
HindII GTYRAC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 4 cut(s) 138, 263, 458, 1136
HphI GGTGA 7 cut(s) 272, 428, 443, 487, 743, 1113, 1145
Hpy166II GTNNAC 2 cut(s) 305, 511
Hpy188I TCNGA 5 cut(s) 214, 322, 340, 393, 1090
Hpy188III TCNNGA 8 cut(s) 58, 121, 167, 185, 578, 782, 938, 1151
Hpy8I GTNNAC 2 cut(s) 305, 511
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 2 cut(s) 728, 944
HpyCH4III ACNGT 1 cut(s) 1032
HpyCH4IV ACGT 7 cut(s) 181, 411, 420, 571, 724, 892, 968
HpyCH4V TGCA 5 cut(s) 111, 289, 885, 1003, 1222
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 108, 403
HpyF3I CTNAG 5 cut(s) 29, 213, 707, 1140, 1199
HpySE526I ACGT 7 cut(s) 181, 411, 420, 571, 724, 892, 968
Hsp92I GRCGYC 3 cut(s) 571, 724, 1043
HspAI GCGC 1 cut(s) 85
Ksp22I TGATCA 4 cut(s) 364, 388, 433, 604
Kzo9I GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
LmnI GCTCC 1 cut(s) 1159
LweI GCATC 3 cut(s) 384, 1045, 1144
MaeI CTAG 2 cut(s) 195, 491
MaeII ACGT 7 cut(s) 181, 411, 420, 571, 724, 892, 968
MaeIII GTNAC 2 cut(s) 1133, 1187
MalI GATC 9 cut(s) 56, 366, 390, 435, 489, 606, 741, 1115, 1149
MboI GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
MboII GAAGA 8 cut(s) 16, 212, 308, 309, 530, 820, 1118, 1121
MlsI TGGCCA 3 cut(s) 753, 906, 924
MluNI TGGCCA 3 cut(s) 753, 906, 924
MlyI GAGTC 1 cut(s) 1130
MnlI CCTC 9 cut(s) 24, 31, 89, 274, 537, 581, 866, 1033, 1067
Mox20I TGGCCA 3 cut(s) 753, 906, 924
MscI TGGCCA 3 cut(s) 753, 906, 924
MseI TTAA 9 cut(s) 453, 480, 612, 623, 702, 759, 770, 807, 971
MslI CAYNNNNRTG 2 cut(s) 423, 429
Msp20I TGGCCA 3 cut(s) 753, 906, 924
MspCI CTTAAG 1 cut(s) 452
MspR9I CCNGG 3 cut(s) 399, 515, 1060
MvaI CCWGG 3 cut(s) 399, 515, 1060
MvnI CGCG 1 cut(s) 939
MwoI GCNNNNNNNGC 3 cut(s) 99, 108, 403
NcoI CCATGG 1 cut(s) 1035
NdeI CATATG 1 cut(s) 1218
NdeII GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
NlaIV GGNNCC 2 cut(s) 1161, 1207
NmuCI GTSAC 1 cut(s) 1133
NruI TCGCGA 1 cut(s) 939
NspI RCATGY 1 cut(s) 347
PagI TCATGA 1 cut(s) 577
PciI ACATGT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PfeI GAWTC 3 cut(s) 138, 263, 458
PflFI GACNNNGTC 1 cut(s) 573
PflMI CCANNNNNTGG 3 cut(s) 797, 854, 1130
PleI GAGTC 1 cut(s) 1130
PpsI GAGTC 1 cut(s) 1130
PscI ACATGT 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 807
Psp6I CCWGG 3 cut(s) 397, 513, 1058
PspGI CCWGG 3 cut(s) 397, 513, 1058
PspN4I GGNNCC 2 cut(s) 1161, 1207
PspPI GGNCC 1 cut(s) 680
PsrI GAACNNNNNNTAC 2 cut(s) 405, 437
PstNI CAGNNNCTG 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 573
RruI TCGCGA 1 cut(s) 939
RsaI GTAC 2 cut(s) 348, 898
RsaNI GTAC 2 cut(s) 347, 897
RseI CAYNNNNRTG 2 cut(s) 423, 429
SaqAI TTAA 9 cut(s) 453, 480, 612, 623, 702, 759, 770, 807, 971
Sau3AI GATC 9 cut(s) 54, 364, 388, 433, 487, 604, 739, 1113, 1147
Sau96I GGNCC 1 cut(s) 680
SchI GAGTC 1 cut(s) 1130
ScrFI CCNGG 3 cut(s) 399, 515, 1060
SfaNI GCATC 3 cut(s) 384, 1045, 1144
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 2 cut(s) 423, 429
SmlI CTYRAG 3 cut(s) 65, 150, 452
SmoI CTYRAG 3 cut(s) 65, 150, 452
SsiI CCGC 3 cut(s) 473, 852, 1157
SspMI CTAG 2 cut(s) 195, 491
StyD4I CCNGG 3 cut(s) 397, 513, 1058
StyI CCWWGG 3 cut(s) 246, 583, 1035
TaaI ACNGT 1 cut(s) 1032
TaiI ACGT 7 cut(s) 184, 414, 423, 574, 727, 895, 971
TaqI TCGA 2 cut(s) 120, 1152
TaqII GACCGA 1 cut(s) 513
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 3 cut(s) 138, 263, 458
Tru1I TTAA 9 cut(s) 453, 480, 612, 623, 702, 759, 770, 807, 971
Tru9I TTAA 9 cut(s) 453, 480, 612, 623, 702, 759, 770, 807, 971
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 1133
Tsp45I GTSAC 1 cut(s) 1133
TspDTI ATGAA 5 cut(s) 17, 413, 638, 820, 1188
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 573
Van91I CCANNNNNTGG 3 cut(s) 797, 854, 1130
Vha464I CTTAAG 1 cut(s) 452
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 3 cut(s) 116, 994, 1010
XceI RCATGY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 2 cut(s) 195, 491
ZraI GACGTC 2 cut(s) 572, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.