FvH4_3g30891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000314
Physical Location & Seq
Reverse (-)
24465357 .. 24468072
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30891.t1

Sequence Viewer

Length: 696 bp
ATGTTGTGCAACCAAGCGAGAATAGCGGCGCCAGTGTGTTGCGTGACGGAGATCAGAGATTGGCTTGCATTGCCGACACCTCTGGTTTTGATGGTTAGAGATCGGAGCTCCACTGCTCGACGCTACCGCGCTGGTGAAGAAGCATCGACGAAGCTTGTGCTGGAGTCAGCAGATCTGAGAACTTTGCTGGCGGATCTGAGAACGTTGCAGGCAACCTCAACCTCGTCAGTGGCGGAGGCGCGTTGGAGATGTGAGAAAGAGGACAAATGGATTCAACGACGTTGCAGGTGGAGGAGATCGGTAACTGAGAGGACAAATCTCGAGAGCGCAGGAGATGGCGGTGCCGTCGTCGCCTCCGTGCCGGTGACTTGGATGACTTGGGAGGGGTCGGACTTGGGAGCTACTAAGGTGAATAATGGAGGCTTCAATTTGCACGGAACCAAAAAGAAGATCAAGCTCTTTAATGAAACTATTGTTGGTGTTGTGATTGGATCTGGGGTGGTTTTCTTCTTATCGTTGCCATACTTTTGTTCATTTTCTGCCGAAAAGGAGCAGCAAGGCCAACATCGTCAAGATAGCGAAGCACCCGAAAGTCTAGATTCCAGGAGAGAAGTTGCCGGAGTCAGTGGTACTGATGCCGGAAGACAACGACGAGCTGAGACGGCCTTGAATTTTCAGAGGAAGGAGACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.71

Weight (kDa)

9.15

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 276
Acc36I ACCTGC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 28, 341
AccII CGCG 2 cut(s) 129, 241
AciI CCGC 5 cut(s) 26, 127, 191, 233, 339
AclI AACGTT 1 cut(s) 203
AclWI GGATC 2 cut(s) 201, 499
AcsI RAATTY 1 cut(s) 670
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 631
AgsI TTSAA 3 cut(s) 275, 427, 670
AjnI CCWGG 1 cut(s) 602
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AluBI AGCT 5 cut(s) 108, 154, 401, 457, 656
AluI AGCT 5 cut(s) 108, 154, 401, 457, 656
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 653, 680
AlwI GGATC 2 cut(s) 201, 499
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 2 cut(s) 559, 663
ApeKI GCWGC 1 cut(s) 553
ApoI RAATTY 1 cut(s) 670
AspLEI GCGC 4 cut(s) 31, 131, 241, 329
AsuHPI GGTGA 3 cut(s) 146, 376, 421
AvaI CYCGRG 1 cut(s) 320
BanI GGYRCC 2 cut(s) 28, 341
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 565
BccI CCATC 2 cut(s) 85, 329
BceAI ACGGC 2 cut(s) 329, 678
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 653, 680
BfaI CTAG 1 cut(s) 596
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 276
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 27, 554
BlsI GCNGC 2 cut(s) 28, 555
Bme1390I CCNGG 1 cut(s) 604
BmeT110I CYCGRG 1 cut(s) 320
BmiI GGNNCC 3 cut(s) 30, 343, 439
BmrFI CCNGG 1 cut(s) 604
BmsI GCATC 2 cut(s) 152, 625
BpiI GAAGAC 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 680
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 604
BseGI GGATG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 4 cut(s) 167, 188, 297, 648
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 565
Bsh1236I CGCG 2 cut(s) 129, 241
BshFI GGCC 2 cut(s) 561, 665
BshNI GGYRCC 2 cut(s) 28, 341
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 3 cut(s) 362, 618, 639
BsmAI GTCTC 2 cut(s) 653, 680
BsmBI CGTCTC 1 cut(s) 653
BsnI GGCC 2 cut(s) 561, 665
Bso31I GGTCTC 1 cut(s) 680
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
BspACI CCGC 5 cut(s) 26, 127, 191, 233, 339
BspANI GGCC 2 cut(s) 561, 665
BspCNI CTCAG 4 cut(s) 168, 189, 298, 649
BspFNI CGCG 2 cut(s) 129, 241
BspLI GGNNCC 3 cut(s) 30, 343, 439
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 201, 499
BspT107I GGYRCC 2 cut(s) 28, 341
BspTNI GGTCTC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 361
BssMI GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
BssNI GRCGYC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 604
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 66, 189, 210
BstDEI CTNAG 5 cut(s) 176, 197, 306, 405, 657
BstF5I GGATG 1 cut(s) 378
BstFNI CGCG 2 cut(s) 129, 241
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 4 cut(s) 31, 131, 241, 329
BstKTI GATC 7 cut(s) 54, 103, 175, 196, 299, 453, 494
BstMAI GTCTC 2 cut(s) 653, 680
BstMBI GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
BstMWI GCNNNNNNNGC 4 cut(s) 23, 70, 350, 662
BstNI CCWGG 1 cut(s) 604
BstSCI CCNGG 1 cut(s) 602
BstUI CGCG 2 cut(s) 129, 241
BstV1I GCAGC 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 649
BstX2I RGATCY 3 cut(s) 172, 193, 491
BstYI RGATCY 3 cut(s) 172, 193, 491
BsuRI GGCC 2 cut(s) 561, 665
BtsCI GGATG 1 cut(s) 378
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 4 cut(s) 39, 111, 234, 631
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 66, 189, 210
CfoI GCGC 4 cut(s) 31, 131, 241, 329
Cfr10I RCCGGY 1 cut(s) 361
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 630
CviJI RGCY 9 cut(s) 64, 108, 154, 401, 423, 457, 561, 656, 665
CviKI_1 RGCY 9 cut(s) 64, 108, 154, 401, 423, 457, 561, 656, 665
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 5 cut(s) 176, 197, 306, 405, 657
DinI GGCGCC 1 cut(s) 30
DpnI GATC 7 cut(s) 53, 102, 174, 195, 298, 452, 493
DpnII GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
EciI GGCGGA 2 cut(s) 206, 248
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 680
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 602
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 653
FaiI YATR 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 27, 554
FokI GGATG 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 27, 554
FspBI CTAG 1 cut(s) 596
GlaI GCGC 4 cut(s) 30, 130, 240, 328
GluI GCNGC 2 cut(s) 27, 554
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 2 cut(s) 561, 665
HapII CCGG 3 cut(s) 362, 618, 639
HgaI GACGC 1 cut(s) 129
HhaI GCGC 4 cut(s) 31, 131, 241, 329
Hin1I GRCGYC 1 cut(s) 29
Hin6I GCGC 4 cut(s) 29, 129, 239, 327
HinP1I GCGC 4 cut(s) 29, 129, 239, 327
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 4 cut(s) 164, 271, 599, 621
HpaII CCGG 3 cut(s) 362, 618, 639
HphI GGTGA 3 cut(s) 146, 376, 421
Hpy188I TCNGA 6 cut(s) 56, 105, 177, 198, 391, 678
Hpy188III TCNNGA 4 cut(s) 320, 322, 572, 596
Hpy99I CGWCG 6 cut(s) 123, 151, 282, 350, 353, 654
HpyAV CCTTC 1 cut(s) 676
HpyCH4IV ACGT 2 cut(s) 203, 280
HpyCH4V TGCA 5 cut(s) 9, 68, 208, 285, 433
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 70, 350, 662
HpyF3I CTNAG 5 cut(s) 176, 197, 306, 405, 657
HpySE526I ACGT 2 cut(s) 203, 280
Hsp92I GRCGYC 1 cut(s) 29
HspAI GCGC 4 cut(s) 29, 129, 239, 327
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
LmnI GCTCC 4 cut(s) 105, 113, 398, 550
Lsp1109I GCAGC 1 cut(s) 565
LweI GCATC 2 cut(s) 152, 625
MaeI CTAG 1 cut(s) 596
MaeII ACGT 2 cut(s) 203, 280
MaeIII GTNAC 3 cut(s) 43, 301, 364
MalI GATC 7 cut(s) 53, 102, 174, 195, 298, 452, 493
MboI GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
MboII GAAGA 4 cut(s) 149, 460, 499, 654
MflI RGATCY 3 cut(s) 172, 193, 491
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 427, 670
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 2 cut(s) 173, 630
MmeI TCCRAC 2 cut(s) 224, 369
MseI TTAA 1 cut(s) 462
MspI CCGG 3 cut(s) 362, 618, 639
MspR9I CCNGG 1 cut(s) 604
MvaI CCWGG 1 cut(s) 604
MvnI CGCG 2 cut(s) 129, 241
MwoI GCNNNNNNNGC 4 cut(s) 23, 70, 350, 662
NarI GGCGCC 1 cut(s) 29
NdeII GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
NlaIV GGNNCC 3 cut(s) 30, 343, 439
NmuCI GTSAC 2 cut(s) 43, 364
PaeR7I CTCGAG 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 2 cut(s) 271, 599
PfoI TCCNGGA 1 cut(s) 602
PkrI GCNGC 2 cut(s) 28, 555
PleI GAGTC 2 cut(s) 172, 629
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 2 cut(s) 172, 629
Psp124BI GAGCTC 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 602
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 30, 343, 439
PsuI RGATCY 3 cut(s) 172, 193, 491
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 27, 554
Sau3AI GATC 7 cut(s) 51, 100, 172, 193, 296, 450, 491
SchI GAGTC 2 cut(s) 173, 630
ScrFI CCNGG 1 cut(s) 604
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 2 cut(s) 152, 625
SfoI GGCGCC 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 427, 670
SsiI CCGC 5 cut(s) 26, 127, 191, 233, 339
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 602
TaiI ACGT 2 cut(s) 206, 283
TaqI TCGA 3 cut(s) 118, 146, 321
TasI AATT 2 cut(s) 427, 670
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 271, 599
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 4 cut(s) 39, 118, 234, 631
TseFI GTSAC 2 cut(s) 43, 364
TseI GCWGC 1 cut(s) 553
Tsp45I GTSAC 2 cut(s) 43, 364
TspDTI ATGAA 2 cut(s) 480, 522
TspGWI ACGGA 3 cut(s) 62, 346, 450
TspRI CASTG 4 cut(s) 39, 118, 234, 631
XapI RAATTY 1 cut(s) 670
XbaI TCTAGA 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.