Rroxscaffold_5G00368700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000314
Physical Location & Seq
Forward (+)
50420479 .. 50423671
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368700.1

Sequence Viewer

Length: 567 bp
ATGAACTTGATTTGGATTCGCATCCGAAGCTCAAAGCGGTCAGATCCGGTAGGTTTTCATTATCGGAGAAGGCTTAAGGCTTTGGATAAAAGCGAGGAAGTGCTGGGTCTCGGCTTCCGAACTCCTAGGGTTTCGGCAGAGGAGGAAAGGCGCACTCGGAGCCTAACTTGGCACAAAGCACTCCGCGAGAAATTGAGTTTCGCTTGGTGGTTGTGCAATGAGCAAAGTTCAGAAGAAGAAGTGCAAATTCCTAAACTTCTCAAAGCGCAAAGCCTCCGCTACAAGCCACATAAAACTTATGGTGGCGCTCGCCGCGTAGATGACGAGGCGACGATAGAAGGCTATATGCCCATTCCCATTCCGCAGAATGCGAGCATAGAAGAGCAGCTTGATATCCTTCAAAAGAATTCTACCACATACCATGAGAATATGAGAAAAGCCTCGCGGAGGACCGTCGACGACTCGATGAGTTCACGACGGTCAAGAGGCTCAAGCCGAGGGCACAACAAACACAAGGCTAATTGGAACGTCAAGAACCTACTCGCAAAGAGGTCGTTTCGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

22.12

Weight (kDa)

10.32

Isoelectric Point (pI)

91.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 456
AccII CGCG 3 cut(s) 186, 315, 445
AciI CCGC 6 cut(s) 37, 184, 277, 313, 362, 445
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 2 cut(s) 246, 406
AfiI CCNNNNNNNGG 1 cut(s) 447
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 401
AluBI AGCT 2 cut(s) 30, 388
AluI AGCT 2 cut(s) 30, 388
Alw26I GTCTC 2 cut(s) 113, 555
AlwI GGATC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 2 cut(s) 246, 406
AspA2I CCTAGG 1 cut(s) 125
AspLEI GCGC 3 cut(s) 153, 268, 308
AspS9I GGNCC 1 cut(s) 450
AvaII GGWCC 1 cut(s) 450
AvrII CCTAGG 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 397
BcgI CGANNNNNNTGC 1 cut(s) 534
BcoDI GTCTC 2 cut(s) 113, 555
BfaI CTAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 309
BfrI CTTAAG 1 cut(s) 74
BisI GCNGC 2 cut(s) 313, 386
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 2 cut(s) 314, 387
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 161
BmsI GCATC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 125, 496
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 125, 496
BseGI GGATG 1 cut(s) 21
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMI GCAATG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 103
Bsh1236I CGCG 3 cut(s) 186, 315, 445
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 2 cut(s) 113, 555
BsmI GAATGC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 6 cut(s) 37, 184, 277, 313, 362, 445
BspFNI CGCG 3 cut(s) 186, 315, 445
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 38
BspQI GCTCTTC 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 125, 496
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 454, 480
Bst6I CTCTTC 1 cut(s) 375
BstAFI CTTAAG 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 310, 373
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 3 cut(s) 186, 315, 445
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 3 cut(s) 153, 268, 308
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 2 cut(s) 113, 555
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 27, 159, 312
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 3 cut(s) 186, 315, 445
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 310, 373
CfoI GCGC 3 cut(s) 153, 268, 308
Cfr13I GGNCC 1 cut(s) 450
CviAII CATG 1 cut(s) 422
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 450
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 406
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 1 cut(s) 425
FaiI YATR 8 cut(s) 291, 300, 345, 347, 377, 418, 423, 431
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 313, 386
FokI GGATG 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 313, 386
FspBI CTAG 1 cut(s) 126
GlaI GCGC 3 cut(s) 152, 267, 307
GluI GCNGC 2 cut(s) 313, 386
GsaI CCCAGC 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 309
HapII CCGG 1 cut(s) 47
HhaI GCGC 3 cut(s) 153, 268, 308
Hin1II CATG 1 cut(s) 425
Hin6I GCGC 3 cut(s) 151, 266, 306
HinP1I GCGC 3 cut(s) 151, 266, 306
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 2 cut(s) 16, 461
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 457, 473
Hpy188I TCNGA 6 cut(s) 26, 43, 66, 119, 159, 232
Hpy188III TCNNGA 4 cut(s) 474, 483, 532, 560
Hpy8I GTNNAC 2 cut(s) 457, 473
Hpy99I CGWCG 4 cut(s) 334, 458, 461, 480
HpyAV CCTTC 3 cut(s) 63, 332, 407
HpyCH4III ACNGT 2 cut(s) 454, 480
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 2 cut(s) 216, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 159, 312
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 1 cut(s) 425
HspAI GCGC 3 cut(s) 151, 266, 306
Kzo9I GATC 1 cut(s) 43
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 2 cut(s) 60, 89
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 528
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 3 cut(s) 245, 248, 392
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 4 cut(s) 191, 246, 406, 520
MlyI GAGTC 1 cut(s) 455
MseI TTAA 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 373
MvnI CGCG 3 cut(s) 186, 315, 445
MwoI GCNNNNNNNGC 3 cut(s) 27, 159, 312
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 1 cut(s) 161
NmeAIII GCCGAG 2 cut(s) 90, 521
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 314, 387
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 43
SalI GTCGAC 1 cut(s) 455
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 313, 386
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 450
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 1 cut(s) 504
SetI ASST 6 cut(s) 32, 55, 390, 531, 540, 554
SfaNI GCATC 1 cut(s) 30
SgrDI CGTCGACG 1 cut(s) 455
SinI GGWCC 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 74, 490
SmoI CTYRAG 2 cut(s) 74, 490
Sse9I AATT 4 cut(s) 191, 246, 406, 520
SsiI CCGC 6 cut(s) 37, 184, 277, 313, 362, 445
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 454, 480
TaiI ACGT 1 cut(s) 531
TaqI TCGA 3 cut(s) 456, 464, 559
TasI AATT 4 cut(s) 191, 246, 406, 520
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 385
TspDTI ATGAA 2 cut(s) 17, 47
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 450
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 2 cut(s) 246, 406
XmaJI CCTAGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.