Rroxscaffold_7G00193460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000314
Physical Location & Seq
Forward (+)
34980337 .. 34989686
9350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193460.1

Sequence Viewer

Length: 678 bp
ATGAGTGAGAAAAACTTTCATATGCAATATGCTAAAAAGACCGGGCCAATATCGGTGGCCCAAGCTATTTATTTCCGACAAAAGAAGTCGGGTCACGGGACTACCCCAACGAGCGCACCCGCGGTGCCGGCACGCTGCGCGCACCACAAGCTCAAAAGAGGCTTGTTTGCACACCGGTGGTTTTGGAGCCAAACATTTTGGCACGCCCGGTGGGACGCCGAGTCTTTTGTATTCACCATCATTGGGATGCCGAGAGGAAAATCTTTACCAAAGGAGATTCCTAAAGTGAAAAGATGGCCGGTGTTGCCACCAATTATGACGACATTACAACGGAAGAGGCTTTTGTTGAGAAGCCTATCCGGAGGGAGCAACCTGTCGATGAGACTATCGCGATCCTTATGGAGAATGTCGAGAACCATCGCCGAAGGCGGACGCGGATCTCGCCGCAGAAACCGCAAAGTCGAAAGGCTCCGCCACGAGTTTGAGCGACGTATGACTCTATACCGGAGAGTACCGGGCGGCGGGTTACACGAACGAGAGGGTGCCTTGAAGGCGCAAGCTATAACCATCACCGCCGAACGGGATGAGCGTCATAAGACAATTTTGAACGCTATAGCGGAACAAAACAAGCATACCTCATCGAGTTCGCAACCTTGCGCAATGAAGGTCCCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.89

Weight (kDa)

11.64

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 658
AccB1I GGYRCC 2 cut(s) 124, 542
AccII CGCG 4 cut(s) 122, 140, 391, 435
AccIII TCCGGA 1 cut(s) 359
AclWI GGATC 2 cut(s) 387, 445
AcoI YGGCCR 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 3 cut(s) 243, 521, 579
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 550, 607
AhdI GACNNNNNGTC 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 175
AluBI AGCT 3 cut(s) 65, 151, 560
AluI AGCT 3 cut(s) 65, 151, 560
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 2 cut(s) 387, 445
Aor13HI TCCGGA 1 cut(s) 359
AoxI GGCC 3 cut(s) 44, 57, 296
ApeKI GCWGC 1 cut(s) 135
AsiGI ACCGGT 1 cut(s) 174
AspLEI GCGC 5 cut(s) 116, 140, 142, 556, 659
AspS9I GGNCC 3 cut(s) 44, 58, 667
AsuC2I CCSGG 3 cut(s) 43, 208, 516
AsuHPI GGTGA 2 cut(s) 226, 562
AvaII GGWCC 1 cut(s) 667
BanI GGYRCC 2 cut(s) 124, 542
BauI CACGAG 1 cut(s) 476
BbvI GCAGC 1 cut(s) 122
BccI CCATC 4 cut(s) 245, 288, 425, 575
BcnI CCSGG 3 cut(s) 43, 208, 516
BcoDI GTCTC 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 612
BglI GCCNNNNNGGC 1 cut(s) 551
BisI GCNGC 3 cut(s) 136, 445, 520
BlsI GCNGC 3 cut(s) 137, 446, 521
Bme1390I CCNGG 3 cut(s) 43, 208, 516
Bme18I GGWCC 1 cut(s) 667
BmeRI GACNNNNNGTC 1 cut(s) 220
BmgT120I GGNCC 3 cut(s) 44, 58, 667
BmiI GGNNCC 5 cut(s) 126, 188, 470, 544, 669
BmrFI CCNGG 3 cut(s) 43, 208, 516
BmsI GCATC 1 cut(s) 237
BpuMI CCSGG 3 cut(s) 43, 208, 516
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 3 cut(s) 174, 359, 504
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 521, 579
Bse118I RCCGGY 3 cut(s) 127, 174, 298
Bse3DI GCAATG 1 cut(s) 666
BseAI TCCGGA 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 252, 589
BseLI CCNNNNNNNGG 3 cut(s) 243, 521, 579
BseMI GCAATG 1 cut(s) 666
BsePI GCGCGC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 122
Bsh1236I CGCG 4 cut(s) 122, 140, 391, 435
BshFI GGCC 3 cut(s) 46, 59, 298
BshNI GGYRCC 2 cut(s) 124, 542
BshTI ACCGGT 1 cut(s) 174
BsiSI CCGG 8 cut(s) 42, 128, 175, 208, 299, 360, 505, 515
BslFI GGGAC 3 cut(s) 112, 227, 653
BslI CCNNNNNNNGG 3 cut(s) 243, 521, 579
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 3 cut(s) 112, 227, 653
BsnI GGCC 3 cut(s) 46, 59, 298
Bsp13I TCCGGA 1 cut(s) 359
Bsp143I GATC 2 cut(s) 392, 437
Bsp68I TCGCGA 1 cut(s) 391
BspANI GGCC 3 cut(s) 46, 59, 298
BspEI TCCGGA 1 cut(s) 359
BspFNI CGCG 4 cut(s) 122, 140, 391, 435
BspLI GGNNCC 5 cut(s) 126, 188, 470, 544, 669
BspPI GGATC 2 cut(s) 387, 445
BspT107I GGYRCC 2 cut(s) 124, 542
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 3 cut(s) 127, 174, 298
BssAI RCCGGY 3 cut(s) 127, 174, 298
BssECI CCNNGG 1 cut(s) 120
BssHII GCGCGC 1 cut(s) 138
BssMI GATC 2 cut(s) 392, 437
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 476
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 5 cut(s) 129, 133, 140, 204, 558
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 252, 589
BstFNI CGCG 4 cut(s) 122, 140, 391, 435
BstHHI GCGC 5 cut(s) 116, 140, 142, 556, 659
BstKTI GATC 2 cut(s) 395, 440
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 2 cut(s) 392, 437
BstMWI GCNNNNNNNGC 7 cut(s) 128, 137, 148, 304, 441, 453, 551
BstSCI CCNGG 3 cut(s) 41, 206, 514
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 4 cut(s) 122, 140, 391, 435
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 3 cut(s) 46, 59, 298
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 403
BtsCI GGATG 2 cut(s) 252, 589
BtuMI TCGCGA 1 cut(s) 391
Cac8I GCNNGC 5 cut(s) 129, 133, 140, 204, 558
CfoI GCGC 5 cut(s) 116, 140, 142, 556, 659
Cfr10I RCCGGY 3 cut(s) 127, 174, 298
Cfr13I GGNCC 3 cut(s) 44, 58, 667
Cfr42I CCGCGG 1 cut(s) 123
CseI GACGC 3 cut(s) 224, 441, 578
Csp6I GTAC 1 cut(s) 512
CspAI ACCGGT 1 cut(s) 174
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviQI GTAC 1 cut(s) 512
DpnI GATC 2 cut(s) 394, 439
DpnII GATC 2 cut(s) 392, 437
DriI GACNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 329
Eam1105I GACNNNNNGTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 2 cut(s) 444, 461
Eco47I GGWCC 1 cut(s) 667
EcoO109I RGGNCCY 1 cut(s) 667
FaqI GGGAC 3 cut(s) 112, 227, 653
FauI CCCGC 2 cut(s) 127, 515
FauNDI CATATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 136, 445, 520
FokI GGATG 2 cut(s) 259, 596
Fsp4HI GCNGC 3 cut(s) 136, 445, 520
FspI TGCGCA 1 cut(s) 658
GlaI GCGC 5 cut(s) 115, 139, 141, 555, 658
GluI GCNGC 3 cut(s) 136, 445, 520
HaeIII GGCC 3 cut(s) 46, 59, 298
HapII CCGG 8 cut(s) 42, 128, 175, 208, 299, 360, 505, 515
HgaI GACGC 3 cut(s) 224, 441, 578
HhaI GCGC 5 cut(s) 116, 140, 142, 556, 659
Hin1I GRCGYC 1 cut(s) 216
Hin6I GCGC 5 cut(s) 114, 138, 140, 554, 657
HinP1I GCGC 5 cut(s) 114, 138, 140, 554, 657
HinfI GANTC 3 cut(s) 221, 277, 496
HpaII CCGG 8 cut(s) 42, 128, 175, 208, 299, 360, 505, 515
HphI GGTGA 2 cut(s) 226, 562
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 4 cut(s) 360, 390, 411, 670
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 3 cut(s) 419, 544, 658
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 2 cut(s) 25, 170
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 137, 148, 304, 441, 453, 551
HpySE526I ACGT 1 cut(s) 490
Hsp92I GRCGYC 1 cut(s) 216
HspAI GCGC 5 cut(s) 114, 138, 140, 554, 657
Kpn2I TCCGGA 1 cut(s) 359
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
KspI CCGCGG 1 cut(s) 123
Kzo9I GATC 2 cut(s) 392, 437
LmnI GCTCC 3 cut(s) 186, 366, 474
LpnPI CCDG 9 cut(s) 55, 141, 188, 221, 312, 373, 386, 518, 528
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 237
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 92, 525
MalI GATC 2 cut(s) 394, 439
MboI GATC 2 cut(s) 392, 437
MboII GAAGA 1 cut(s) 346
MflI RGATCY 1 cut(s) 437
MluCI AATT 2 cut(s) 312, 600
MlyI GAGTC 2 cut(s) 230, 490
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 6 cut(s) 152, 248, 330, 356, 532, 646
MroI TCCGGA 1 cut(s) 359
MroNI GCCGGC 1 cut(s) 127
MslI CAYNNNNRTG 2 cut(s) 175, 245
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 8 cut(s) 42, 128, 175, 208, 299, 360, 505, 515
MspR9I CCNGG 3 cut(s) 43, 208, 516
MvnI CGCG 4 cut(s) 122, 140, 391, 435
MwoI GCNNNNNNNGC 7 cut(s) 128, 137, 148, 304, 441, 453, 551
NaeI GCCGGC 1 cut(s) 129
NciI CCSGG 3 cut(s) 43, 208, 516
NdeI CATATG 1 cut(s) 21
NdeII GATC 2 cut(s) 392, 437
NgoMIV GCCGGC 1 cut(s) 127
NlaIV GGNNCC 5 cut(s) 126, 188, 470, 544, 669
NmeAIII GCCGAG 2 cut(s) 244, 276
NmuCI GTSAC 1 cut(s) 92
NruI TCGCGA 1 cut(s) 391
NsbI TGCGCA 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 175
PauI GCGCGC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 586
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 277
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 3 cut(s) 137, 446, 521
PleI GAGTC 2 cut(s) 229, 490
PpsI GAGTC 2 cut(s) 229, 490
PpuMI RGGWCCY 1 cut(s) 667
Psp5II RGGWCCY 1 cut(s) 667
PspN4I GGNNCC 5 cut(s) 126, 188, 470, 544, 669
PspPI GGNCC 3 cut(s) 44, 58, 667
PspPPI RGGWCCY 1 cut(s) 667
PsuI RGATCY 1 cut(s) 437
PteI GCGCGC 1 cut(s) 138
RruI TCGCGA 1 cut(s) 391
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
RseI CAYNNNNRTG 2 cut(s) 175, 245
SacII CCGCGG 1 cut(s) 123
SatI GCNGC 3 cut(s) 136, 445, 520
Sau3AI GATC 2 cut(s) 392, 437
Sau96I GGNCC 3 cut(s) 44, 58, 667
SchI GAGTC 2 cut(s) 230, 490
ScrFI CCNGG 3 cut(s) 43, 208, 516
SetI ASST 8 cut(s) 67, 153, 375, 493, 562, 638, 655, 669
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 612
Sfr303I CCGCGG 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 123
SinI GGWCC 1 cut(s) 667
SmiMI CAYNNNNRTG 2 cut(s) 175, 245
Sse9I AATT 2 cut(s) 312, 600
StyD4I CCNGG 3 cut(s) 41, 206, 514
TaiI ACGT 1 cut(s) 493
TaqI TCGA 4 cut(s) 377, 410, 462, 641
TasI AATT 2 cut(s) 312, 600
TauI GCSGC 2 cut(s) 447, 522
TfiI GAWTC 1 cut(s) 277
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 8, 677
TspGWI ACGGA 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.