Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002053.1

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

53979 .. 55216

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002053.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggagaatgtcgagaaccatcgcaagaaaatggacgcggatcttgccagagaaactgcaaaatcagaaaggctccgccgcgagtttgagcagcgtatgactctatacgcggtgagtaccaggcagcaggttacacgaacagaggctgacttgaaggcgcaagctataaccatcgctgccgaacaggatgagcgtcataagacaattttgaacgccatcgcgagccaaaacaagcatacctcatcggagttagcgaccttgcgcaaggaaggtccctgcttgactactcaagtcggttcacagcaaggcgaattggaaagccaaaaatcttcgcgcgaagaggttatttctgaggttgaattgcctacagatggcaataaacctaaatgcctcattgatgagtcacggccttacatagaggctttgcatggagaagatggtcaacaaaattgttcttctgacaatataattgtctcagaacatatagctgatttctccactgatcaagccaaatacgtggttgttaatcagatgcatggggggcatgatattgtccaggttcacccccctaataaccagaagcagctgtatgatcaatttaattatggttatgctactggacgtcatcatgaccaagacaccatgttctatgacatggtggttggcgacaaagccgatcttgggacaacgtcatctccaaaatttcaattggagatctcgcttcgtcaaccaacaaagatacttggggggcaatactccttctacgagccaaatttctttcaagttttcaacgcgaagtatctttggtattttcctacaagctctcacaagagggattttcaggctgtaaattttgacacgtcggagcttggagtaaggcatagagggcctcctccgtggccttctagaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

304

Amino Acids

34.65

Weight (kDa)

5.85

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	625
Acc16I	TGCGCA	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	118
AccII	CGCG	7 cut(s)	38, 81, 110, 221, 334, 336, 794
AciI	CCGC	4 cut(s)	38, 76, 79, 110
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	3 cut(s)	701, 772, 850
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	3 cut(s)	371, 681, 908
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	6 cut(s)	154, 211, 359, 707, 782, 790
AjiI	CACGTC	1 cut(s)	861
AjnI	CCWGG	2 cut(s)	119, 555
AluBI	AGCT	5 cut(s)	164, 488, 586, 822, 868
AluI	AGCT	5 cut(s)	164, 488, 586, 822, 868
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	407, 887, 899
ApeKI	GCWGC	4 cut(s)	91, 124, 176, 583
ApoI	RAATTY	3 cut(s)	701, 772, 850
AspLEI	GCGC	3 cut(s)	160, 264, 336
AspS9I	GGNCC	2 cut(s)	272, 887
AsuHPI	GGTGA	2 cut(s)	124, 554
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	103, 136, 163, 595
BccI	CCATC	5 cut(s)	27, 179, 224, 365, 431
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	2 cut(s)	121, 557
BclI	TGATCA	2 cut(s)	502, 592
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	5 cut(s)	79, 92, 125, 177, 584
BlsI	GCNGC	5 cut(s)	80, 93, 126, 178, 585
Bme1390I	CCNGG	2 cut(s)	121, 557
Bme18I	GGWCC	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	861
BmgT120I	GGNCC	2 cut(s)	272, 887
BmiI	GGNNCC	2 cut(s)	74, 274
BmrFI	CCNGG	2 cut(s)	121, 557
BmsI	GCATC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	896
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 681, 908
Bse1I	ACTGG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	121, 557
BseDI	CCNNGG	1 cut(s)	896
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	3 cut(s)	371, 681, 908
BseMII	CTCAG	2 cut(s)	342, 489
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	4 cut(s)	103, 136, 163, 595
Bsh1236I	CGCG	7 cut(s)	38, 81, 110, 221, 334, 336, 794
BshFI	GGCC	3 cut(s)	409, 889, 901
BslFI	GGGAC	2 cut(s)	258, 697
BslI	CCNNNNNNNGG	3 cut(s)	371, 681, 908
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	2 cut(s)	258, 697
BsnI	GGCC	3 cut(s)	409, 889, 901
Bsp143I	GATC	5 cut(s)	40, 502, 592, 676, 714
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	4 cut(s)	38, 76, 79, 110
BspANI	GGCC	3 cut(s)	409, 889, 901
BspCNI	CTCAG	2 cut(s)	343, 488
BspFNI	CGCG	7 cut(s)	38, 81, 110, 221, 334, 336, 794
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	74, 274
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	896
BssMI	GATC	5 cut(s)	40, 502, 592, 676, 714
BssNI	GRCGYC	1 cut(s)	622
Bst2UI	CCWGG	2 cut(s)	121, 557
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	162, 223
BstDEI	CTNAG	2 cut(s)	351, 475
BstDSI	CCRYGG	1 cut(s)	896
BstENI	CCTNNNNNAGG	1 cut(s)	906
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	7 cut(s)	38, 81, 110, 221, 334, 336, 794
BstHHI	GCGC	3 cut(s)	160, 264, 336
BstKTI	GATC	5 cut(s)	43, 505, 595, 679, 717
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	5 cut(s)	40, 502, 592, 676, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 541, 886
BstNI	CCWGG	2 cut(s)	121, 557
BstSCI	CCNGG	2 cut(s)	119, 555
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	7 cut(s)	38, 81, 110, 221, 334, 336, 794
BstV1I	GCAGC	4 cut(s)	103, 136, 163, 595
BstX2I	RGATCY	2 cut(s)	40, 714
BstXI	CCANNNNNNTGG	1 cut(s)	517
BstYI	RGATCY	2 cut(s)	40, 714
BsuRI	GGCC	3 cut(s)	409, 889, 901
BtgI	CCRYGG	1 cut(s)	896
BtgZI	GCGATG	3 cut(s)	5, 157, 202
BtrI	CACGTC	1 cut(s)	861
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	498
BtuMI	TCGCGA	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	162, 223
CaiI	CAGNNNCTG	1 cut(s)	146
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	3 cut(s)	160, 264, 336
Cfr13I	GGNCC	2 cut(s)	272, 887
CseI	GACGC	2 cut(s)	44, 182
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	6 cut(s)	428, 536, 545, 629, 643, 655
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	351, 475
DpnI	GATC	5 cut(s)	42, 504, 594, 678, 716
DpnII	GATC	5 cut(s)	40, 502, 592, 676, 714
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	906
EcoO109I	RGGNCCY	2 cut(s)	272, 887
EcoRII	CCWGG	2 cut(s)	119, 555
EcoT22I	ATGCAT	1 cut(s)	537
FaeI	CATG	6 cut(s)	431, 539, 548, 632, 646, 658
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	2 cut(s)	258, 697
FatI	CATG	6 cut(s)	427, 535, 544, 628, 642, 654
FbaI	TGATCA	2 cut(s)	502, 592
Fnu4HI	GCNGC	5 cut(s)	79, 92, 125, 177, 584
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	5 cut(s)	79, 92, 125, 177, 584
FspBI	CTAG	1 cut(s)	906
FspI	TGCGCA	1 cut(s)	263
GlaI	GCGC	3 cut(s)	159, 263, 335
GluI	GCNGC	5 cut(s)	79, 92, 125, 177, 584
HaeIII	GGCC	3 cut(s)	409, 889, 901
HgaI	GACGC	2 cut(s)	44, 182
HhaI	GCGC	3 cut(s)	160, 264, 336
Hin1I	GRCGYC	1 cut(s)	622
Hin1II	CATG	6 cut(s)	431, 539, 548, 632, 646, 658
Hin6I	GCGC	3 cut(s)	158, 262, 334
HinP1I	GCGC	3 cut(s)	158, 262, 334
HincII	GTYRAC	2 cut(s)	443, 728
HindII	GTYRAC	2 cut(s)	443, 728
HinfI	GANTC	2 cut(s)	100, 401
HphI	GGTGA	2 cut(s)	124, 554
Hpy166II	GTNNAC	4 cut(s)	299, 443, 562, 728
Hpy188I	TCNGA	7 cut(s)	67, 247, 352, 460, 478, 531, 865
Hpy188III	TCNNGA	4 cut(s)	13, 220, 629, 906
Hpy8I	GTNNAC	4 cut(s)	299, 443, 562, 728
Hpy99I	CGWCG	1 cut(s)	865
HpyAV	CCTTC	4 cut(s)	148, 263, 769, 912
HpyCH4IV	ACGT	4 cut(s)	516, 622, 689, 860
HpyCH4V	TGCA	3 cut(s)	59, 427, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 541, 886
HpyF3I	CTNAG	2 cut(s)	351, 475
HpySE526I	ACGT	4 cut(s)	516, 622, 689, 860
Hsp92I	GRCGYC	1 cut(s)	622
Hsp92II	CATG	6 cut(s)	431, 539, 548, 632, 646, 658
HspAI	GCGC	3 cut(s)	158, 262, 334
Ksp22I	TGATCA	2 cut(s)	502, 592
Kzo9I	GATC	5 cut(s)	40, 502, 592, 676, 714
LmnI	GCTCC	2 cut(s)	78, 865
Lsp1109I	GCAGC	4 cut(s)	103, 136, 163, 595
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	4 cut(s)	516, 622, 689, 860
MaeIII	GTNAC	2 cut(s)	130, 402
MalI	GATC	5 cut(s)	42, 504, 594, 678, 716
MboI	GATC	5 cut(s)	40, 502, 592, 676, 714
MboII	GAAGA	4 cut(s)	321, 350, 446, 447
MfeI	CAATTG	1 cut(s)	707
MflI	RGATCY	2 cut(s)	40, 714
MlyI	GAGTC	2 cut(s)	94, 410
MmeI	TCCRAC	1 cut(s)	843
Mph1103I	ATGCAT	1 cut(s)	537
MseI	TTAA	2 cut(s)	525, 600
MspA1I	CMGCKG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	121, 557
MunI	CAATTG	1 cut(s)	707
MvaI	CCWGG	2 cut(s)	121, 557
MvnI	CGCG	7 cut(s)	38, 81, 110, 221, 334, 336, 794
MwoI	GCNNNNNNNGC	3 cut(s)	44, 541, 886
NdeII	GATC	5 cut(s)	40, 502, 592, 676, 714
NlaIII	CATG	6 cut(s)	431, 539, 548, 632, 646, 658
NlaIV	GGNNCC	2 cut(s)	74, 274
NmuCI	GTSAC	1 cut(s)	402
NruI	TCGCGA	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	537
PagI	TCATGA	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PflFI	GACNNNGTC	1 cut(s)	688
PkrI	GCNGC	5 cut(s)	80, 93, 126, 178, 585
PleI	GAGTC	2 cut(s)	94, 409
PpsI	GAGTC	2 cut(s)	94, 409
Ppu21I	YACGTR	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	119, 555
PspGI	CCWGG	2 cut(s)	119, 555
PspN4I	GGNNCC	2 cut(s)	74, 274
PspPI	GGNCC	2 cut(s)	272, 887
PspPPI	RGGWCCY	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	40, 714
PsyI	GACNNNGTC	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	586
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	525, 600
SatI	GCNGC	5 cut(s)	79, 92, 125, 177, 584
Sau3AI	GATC	5 cut(s)	40, 502, 592, 676, 714
Sau96I	GGNCC	2 cut(s)	272, 887
SchI	GAGTC	2 cut(s)	94, 410
ScrFI	CCNGG	2 cut(s)	121, 557
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SsiI	CCGC	4 cut(s)	38, 76, 79, 110
SspMI	CTAG	1 cut(s)	906
StyD4I	CCNGG	2 cut(s)	119, 555
TaiI	ACGT	4 cut(s)	519, 625, 692, 863
TaqI	TCGA	1 cut(s)	12
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	525, 600
Tru9I	TTAA	2 cut(s)	525, 600
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	4 cut(s)	91, 124, 176, 583
Tsp45I	GTSAC	1 cut(s)	402
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	1 cut(s)	505
Tth111I	GACNNNGTC	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	906
XapI	RAATTY	3 cut(s)	701, 772, 850
XbaI	TCTAGA	1 cut(s)	905
XspI	CTAG	1 cut(s)	906
ZraI	GACGTC	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.