Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

16041963 .. 16043283

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTGGAGAGTTCAGACCAACAAGTGGTCAAATGCAAAACTCAATTCGTGGCTTATTCTCGAAGACACCATGTTCTACGACATGGTAGTTGGTAACAAAGCCGATCTATATTCATCTTCATCTACAGAATTAAAATTGAAGATGGTGTTTCGCCAACCAACAAGGATACTTGGGGGGCAAGATTACTCCTCCTACGAGCCAAATTTCTCCAAAGTCTTTGACGCAAAGTATCCACATCAAAACGGGGGGCACCAAAGGGACCGGACCAATCTCTATGGTCTTAATTGGATTGTTCAAAAGTGCCGAGCAAACCGTCATCTACCGAGCAAAGAGGAAGCTGAACATCAACATGAGGAGCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

121

Amino Acids

14.31

Weight (kDa)

9.01

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	139, 296
AluBI	AGCT	2 cut(s)	338, 358
AluI	AGCT	2 cut(s)	338, 358
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	259, 264
AvaII	GGWCC	2 cut(s)	259, 264
BaeGI	GKGCMC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	69
BccI	CCATC	1 cut(s)	136
BciVI	GTATCC	2 cut(s)	159, 240
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	2 cut(s)	159, 240
Bme18I	GGWCC	2 cut(s)	259, 264
BmgT120I	GGNCC	2 cut(s)	259, 264
BmiI	GGNNCC	2 cut(s)	251, 260
BpiI	GAAGAC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	178
BseSI	GKGCMC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	251, 260
BspT107I	GGYRCC	1 cut(s)	249
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	314
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	69
BsuI	GTATCC	2 cut(s)	159, 240
Cfr13I	GGNCC	2 cut(s)	259, 264
CseI	GACGC	1 cut(s)	230
CviAII	CATG	3 cut(s)	70, 82, 350
CviJI	RGCY	5 cut(s)	52, 101, 199, 338, 358
CviKI_1	RGCY	5 cut(s)	52, 101, 199, 338, 358
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	259, 264
FaeI	CATG	3 cut(s)	73, 85, 353
FaiI	YATR	5 cut(s)	71, 83, 109, 276, 351
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	69, 81, 349
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	73, 85, 353
HpaII	CCGG	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	73, 85, 353
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	3 cut(s)	74, 108, 151
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	5 cut(s)	43, 128, 134, 202, 283
MnlI	CCTC	3 cut(s)	199, 325, 346
MseI	TTAA	2 cut(s)	131, 282
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	3 cut(s)	73, 85, 353
NlaIV	GGNNCC	2 cut(s)	251, 260
NmeAIII	GCCGAG	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	251, 260
PspPI	GGNCC	2 cut(s)	259, 264
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	131, 282
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	2 cut(s)	259, 264
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	2 cut(s)	340, 360
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	259, 264
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	5 cut(s)	43, 128, 134, 202, 283
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	43, 128, 134, 202, 283
Tru1I	TTAA	2 cut(s)	131, 282
Tru9I	TTAA	2 cut(s)	131, 282
TspDTI	ATGAA	2 cut(s)	102, 108
Van91I	CCANNNNNTGG	1 cut(s)	24
VpaK11BI	GGWCC	2 cut(s)	259, 264
XapI	RAATTY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.