Rmu_sc0012619.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012619.1
OG0000314
Physical Location & Seq
Forward (+)
24508 .. 25530
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012619.1_g000003.1.cds

Sequence Viewer

Length: 1023 bp
atgatgaccaatgttgccaccattggcgacattacgacaagagaggctctcgttccgaagcctattccggagggaacgaccttcgaggaaaagttcgcgatcatcatggagaatatcgagaaccattgtaagaaggtagctgctgactttgacagggaaaccgcgaaaacagacgagctcatacacgaactagaccagcacatcgcccagcgtgctgaggataagcgacaaattgcacagtcagagaatgcggtaggagttcatgccagaagtatcgttgatgagcagagtttgcaacaaaagcaagccatggaagccatctcgaaacaaaacaagcaaacctcatcaaagttcgcgaccttgcacaatcaagaatcggcacgcgaggaggttgtttctgagactgaattgcctataggtggcaatcaatccaagggtctcaatggtgagtcacagccttacacaggggctgtgtatggagaagatgacccacgagattgttcttctgacaatataattatctcagaacaaatatgtaatttctccactaataaggccaaatatgtggctactgatcagatgcatggggggcaagatattgtccagattcaccctcttgataaccaacaacaagtgcataatcaatttaattatgactctgctactggacgtcatggccatgcaaagggtcaagagcatgatccacttaattatcaattaaggcatggcccaccttataatcatcaattaagccttggccttgctactggacgtcatggtgaaggtggccacaatcatggccaacttaattatcaattaagttatgatcttgaaaagccaatctgtggctttattaatcaattctacttcaatttcttcatatatgcttcaagaccaagcagtggccttgatttatgtgggagatacatctgcaacccaccttgcaagaatagccataataattattctagtggccaatttgtcattcgcgactgtaagtttgaatatcatccaagtttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.18

Weight (kDa)

5.66

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AatII GACGTC 2 cut(s) 673, 775
AccB7I CCANNNNNTGG 2 cut(s) 845, 902
AccII CGCG 5 cut(s) 98, 164, 356, 384, 990
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 2 cut(s) 162, 251
AclWI GGATC 1 cut(s) 695
AcoI YGGCCR 4 cut(s) 676, 787, 799, 973
AcyI GRCGYC 2 cut(s) 670, 772
AfiI CCNNNNNNNGG 5 cut(s) 419, 464, 685, 845, 902
AgsI TTSAA 4 cut(s) 833, 871, 891, 1004
AjuI GAANNNNNNNTTGG 2 cut(s) 969, 1001
AluBI AGCT 2 cut(s) 140, 178
AluI AGCT 2 cut(s) 140, 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 395, 443
AlwI GGATC 1 cut(s) 695
AlwNI CAGNNNCTG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 8 cut(s) 555, 676, 727, 757, 787, 799, 904, 973
ApeKI GCWGC 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
AseI ATTAAT 1 cut(s) 855
AspS9I GGNCC 1 cut(s) 728
AsuHPI GGTGA 3 cut(s) 458, 602, 791
BalI TGGCCA 4 cut(s) 678, 789, 801, 975
BanII GRGCYC 1 cut(s) 180
BauI CACGAG 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 326
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 395, 443
BfaI CTAG 2 cut(s) 191, 969
BfmI CTRYAG 1 cut(s) 414
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 728
BmsI GCATC 1 cut(s) 570
BplI GAGNNNNNCTC 2 cut(s) 33, 65
Bpu10I CCTNAGC 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 670, 772
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 309, 432, 754
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 5 cut(s) 419, 464, 685, 845, 902
Bse1I ACTGG 2 cut(s) 670, 772
BseAI TCCGGA 1 cut(s) 67
BseDI CCNNGG 3 cut(s) 309, 432, 754
BseGI GGATG 1 cut(s) 1009
BseLI CCNNNNNNNGG 5 cut(s) 419, 464, 685, 845, 902
BseMII CTCAG 3 cut(s) 207, 390, 537
BseNI ACTGG 2 cut(s) 670, 772
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 207
Bsh1236I CGCG 5 cut(s) 98, 164, 356, 384, 990
BshFI GGCC 8 cut(s) 557, 678, 729, 759, 789, 801, 906, 975
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 5 cut(s) 419, 464, 685, 845, 902
BsmAI GTCTC 2 cut(s) 395, 443
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 8 cut(s) 557, 678, 729, 759, 789, 801, 906, 975
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 4 cut(s) 99, 574, 700, 826
Bsp19I CCATGG 1 cut(s) 309
Bsp68I TCGCGA 3 cut(s) 98, 356, 990
BspACI CCGC 2 cut(s) 162, 251
BspANI GGCC 8 cut(s) 557, 678, 729, 759, 789, 801, 906, 975
BspCNI CTCAG 3 cut(s) 208, 391, 536
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 5 cut(s) 98, 164, 356, 384, 990
BspPI GGATC 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 443
BsrI ACTGG 2 cut(s) 670, 772
BssECI CCNNGG 3 cut(s) 309, 432, 754
BssMI GATC 4 cut(s) 99, 574, 700, 826
BssNI GRCGYC 2 cut(s) 670, 772
BssSI CACGAG 1 cut(s) 492
BssT1I CCWWGG 3 cut(s) 309, 432, 754
Bst2BI CACGAG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 240, 995
BstACI GRCGYC 2 cut(s) 670, 772
BstAPI GCANNNNNTGC 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 213, 306, 382
BstDEI CTNAG 3 cut(s) 216, 399, 523
BstDSI CCRYGG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 1009
BstFNI CGCG 5 cut(s) 98, 164, 356, 384, 990
BstKTI GATC 4 cut(s) 102, 577, 703, 829
BstMAI GTCTC 2 cut(s) 395, 443
BstMBI GATC 4 cut(s) 99, 574, 700, 826
BstMWI GCNNNNNNNGC 6 cut(s) 212, 292, 301, 314, 589, 951
BstSFI CTRYAG 1 cut(s) 414
BstUI CGCG 5 cut(s) 98, 164, 356, 384, 990
BstV1I GCAGC 1 cut(s) 127
BstXI CCANNNNNNTGG 2 cut(s) 565, 797
BsuRI GGCC 8 cut(s) 557, 678, 729, 759, 789, 801, 906, 975
BtgI CCRYGG 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 1009
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 1 cut(s) 907
BtuMI TCGCGA 3 cut(s) 98, 356, 990
Cac8I GCNNGC 3 cut(s) 213, 306, 382
CaiI CAGNNNCTG 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 728
DdeI CTNAG 3 cut(s) 216, 399, 523
DpnI GATC 4 cut(s) 101, 576, 702, 828
DpnII GATC 4 cut(s) 99, 574, 700, 826
EaeI YGGCCR 4 cut(s) 676, 787, 799, 973
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 309, 432, 754
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoT14I CCWWGG 3 cut(s) 309, 432, 754
EcoT22I ATGCAT 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 3 cut(s) 309, 432, 754
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 996
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 191, 969
GluI GCNGC 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 211
HaeIII GGCC 8 cut(s) 557, 678, 729, 759, 789, 801, 906, 975
HapII CCGG 1 cut(s) 68
Hin1I GRCGYC 2 cut(s) 670, 772
HinfI GANTC 4 cut(s) 374, 449, 607, 656
HpaII CCGG 1 cut(s) 68
HphI GGTGA 3 cut(s) 458, 602, 791
Hpy188I TCNGA 6 cut(s) 57, 244, 400, 508, 526, 579
HpyAV CCTTC 3 cut(s) 91, 127, 776
HpyCH4III ACNGT 2 cut(s) 240, 995
HpyCH4IV ACGT 2 cut(s) 670, 772
HpyCH4V TGCA 8 cut(s) 236, 295, 364, 583, 637, 683, 933, 945
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 292, 301, 314, 589, 951
HpyF3I CTNAG 3 cut(s) 216, 399, 523
HpySE526I ACGT 2 cut(s) 670, 772
Hsp92I GRCGYC 2 cut(s) 670, 772
Kpn2I TCCGGA 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 4 cut(s) 99, 574, 700, 826
LpnPI CCDG 9 cut(s) 81, 139, 209, 221, 280, 450, 617, 651, 753
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 191, 969
MaeII ACGT 2 cut(s) 670, 772
MaeIII GTNAC 1 cut(s) 450
MalI GATC 4 cut(s) 101, 576, 702, 828
MboI GATC 4 cut(s) 99, 574, 700, 826
MboII GAAGA 3 cut(s) 494, 495, 868
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 4 cut(s) 678, 789, 801, 975
MluNI TGGCCA 4 cut(s) 678, 789, 801, 975
MlyI GAGTC 2 cut(s) 458, 650
MnlI CCTC 8 cut(s) 37, 64, 79, 211, 352, 379, 382, 624
Mox20I TGGCCA 4 cut(s) 678, 789, 801, 975
Mph1103I ATGCAT 1 cut(s) 585
MroI TCCGGA 1 cut(s) 67
MscI TGGCCA 4 cut(s) 678, 789, 801, 975
MseI TTAA 7 cut(s) 648, 708, 719, 749, 807, 818, 855
MslI CAYNNNNRTG 2 cut(s) 678, 795
Msp20I TGGCCA 4 cut(s) 678, 789, 801, 975
MspI CCGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 253
MvnI CGCG 5 cut(s) 98, 164, 356, 384, 990
MwoI GCNNNNNNNGC 6 cut(s) 212, 292, 301, 314, 589, 951
NcoI CCATGG 1 cut(s) 309
NdeII GATC 4 cut(s) 99, 574, 700, 826
NmuCI GTSAC 1 cut(s) 450
NruI TCGCGA 3 cut(s) 98, 356, 990
NsiI ATGCAT 1 cut(s) 585
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 374, 607
PflMI CCANNNNNTGG 2 cut(s) 845, 902
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 2 cut(s) 457, 650
PpsI GAGTC 2 cut(s) 457, 650
PshBI ATTAAT 1 cut(s) 855
PsiI TTATAA 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 728
PstNI CAGNNNCTG 1 cut(s) 470
RruI TCGCGA 3 cut(s) 98, 356, 990
RseI CAYNNNNRTG 2 cut(s) 678, 795
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 7 cut(s) 648, 708, 719, 749, 807, 818, 855
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 4 cut(s) 99, 574, 700, 826
Sau96I GGNCC 1 cut(s) 728
SchI GAGTC 2 cut(s) 458, 650
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 678, 795
SsiI CCGC 2 cut(s) 162, 251
SspMI CTAG 2 cut(s) 191, 969
SstI GAGCTC 1 cut(s) 180
StyI CCWWGG 3 cut(s) 309, 432, 754
TaaI ACNGT 2 cut(s) 240, 995
TaiI ACGT 2 cut(s) 673, 775
TaqI TCGA 3 cut(s) 84, 117, 323
TfiI GAWTC 2 cut(s) 374, 607
Tru1I TTAA 7 cut(s) 648, 708, 719, 749, 807, 818, 855
Tru9I TTAA 7 cut(s) 648, 708, 719, 749, 807, 818, 855
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 2 cut(s) 251, 868
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 2 cut(s) 845, 902
VspI ATTAAT 1 cut(s) 855
XagI CCTNNNNNAGG 1 cut(s) 462
XspI CTAG 2 cut(s) 191, 969
ZraI GACGTC 2 cut(s) 671, 773
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.