Rmu_sc0024172.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024172.1
OG0000314
Physical Location & Seq
Reverse (-)
2 .. 356
355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024172.1_g000001.1.cds

Sequence Viewer

Length: 355 bp
atggccaatgtttccaccattggcgacactatgacaagagaggctttcgttgcaaagcctattccagagggagcgaccttcgaggaaaggtgcgcgattatcatggaaaatatcgagaaccatcgtaagaagatagttgctgactttgaaagggagactgctaggacagaccaactcatacgcgaactagacgagcgcatgacccaacacgagcacacctcatcggagtgcgcgaccttgcgcaaaggtcctagcttggctactcggggcagttcgcatcaagacgaattggaaagccaaaaatcttctcgcaaagaggttgtttctgaggttgaattgcctacaggtggcgata
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.23

Weight (kDa)

5.14

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 242
AccII CGCG 3 cut(s) 95, 183, 233
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 2 cut(s) 149, 335
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 4 cut(s) 95, 198, 233, 243
AspS9I GGNCC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 1 cut(s) 248
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 3 cut(s) 162, 188, 252
BfmI CTRYAG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 248
BmsI GCATC 1 cut(s) 286
BplI GAGNNNNNCTC 2 cut(s) 203, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 318
Bsh1236I CGCG 3 cut(s) 95, 183, 233
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 216
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 3 cut(s) 95, 183, 233
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 327
BstFNI CGCG 3 cut(s) 95, 183, 233
BstHHI GCGC 4 cut(s) 95, 198, 233, 243
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 3 cut(s) 95, 183, 233
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 4 cut(s) 95, 198, 233, 243
Cfr13I GGNCC 1 cut(s) 248
CviAII CATG 2 cut(s) 103, 199
CviJI RGCY 6 cut(s) 5, 44, 58, 255, 260, 297
CviKI_1 RGCY 6 cut(s) 5, 44, 58, 255, 260, 297
DdeI CTNAG 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 248
FaeI CATG 2 cut(s) 106, 202
FaiI YATR 4 cut(s) 32, 104, 179, 200
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FatI CATG 2 cut(s) 102, 198
FspBI CTAG 3 cut(s) 162, 188, 252
FspI TGCGCA 1 cut(s) 242
GlaI GCGC 4 cut(s) 94, 197, 232, 242
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 4 cut(s) 95, 198, 233, 243
Hin1II CATG 2 cut(s) 106, 202
Hin6I GCGC 4 cut(s) 93, 196, 231, 241
HinP1I GCGC 4 cut(s) 93, 196, 231, 241
Hpy188I TCNGA 2 cut(s) 226, 328
Hpy188III TCNNGA 3 cut(s) 65, 115, 281
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 2 cut(s) 106, 202
HspAI GCGC 4 cut(s) 93, 196, 231, 241
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 2 cut(s) 78, 330
LweI GCATC 1 cut(s) 286
MaeI CTAG 3 cut(s) 162, 188, 252
MboII GAAGA 2 cut(s) 142, 297
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 287, 335
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 34, 61, 76, 229, 310, 322
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 226
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 3 cut(s) 95, 183, 233
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 2 cut(s) 106, 202
NsbI TGCGCA 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 216
SetI ASST 9 cut(s) 80, 92, 221, 239, 250, 257, 321, 333, 349
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 2 cut(s) 287, 335
SspMI CTAG 3 cut(s) 162, 188, 252
TaqI TCGA 2 cut(s) 81, 114
TasI AATT 2 cut(s) 287, 335
VpaK11BI GGWCC 1 cut(s) 248
XspI CTAG 3 cut(s) 162, 188, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.