Rmu_ssc0000392.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000392.1
OG0000314
Physical Location & Seq
Forward (+)
25964 .. 26602
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000392.1_g000010.1.cds

Sequence Viewer

Length: 588 bp
atggccaatgttgccaccactggcaatactgacattgatgacgagtttgcgcccctcatcatcccagaggatgctaggatcgatgaacgactccgcatccttactgtcaataaagacaactataggaggcacctggctacgtcaattgtgaggactgagcagcagcttcacgatttcaatcgacgaatgaacgagaatgctcataaagctaaagagcaaagggagcagcgtgctcgagaagctgaacagcgcgatcgagagcatatcctggactgtatagcgacccggtgtaagatcgcatcagagttctcgaccttgtgcaaggaagattccatcttggctactcaagtcagttcgcatcaagacaaattggaaagtcaagaatctgcacgtaaagaggttgtttctgaggttgaattgcctacaggtggtgataaacctaaacgcctcactggtgaattacagccttacacagagactgtgcatggagaagattgtccacaagaatgttcttcagccaagaaaattgtctctgaacagatagctgatttctctactgatccagccatatatgtggctactgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.14

Weight (kDa)

5.09

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AccII CGCG 1 cut(s) 252
AciI CCGC 1 cut(s) 94
AclWI GGATC 2 cut(s) 86, 554
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 2 cut(s) 178, 416
AjnI CCWGG 2 cut(s) 132, 267
AluBI AGCT 4 cut(s) 166, 209, 242, 545
AluI AGCT 4 cut(s) 166, 209, 242, 545
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 470, 535
AlwI GGATC 2 cut(s) 86, 554
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 160, 163, 226
AspLEI GCGC 2 cut(s) 52, 252
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 443, 467
AvaI CYCGRG 1 cut(s) 234
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 3 cut(s) 172, 175, 238
BccI CCATC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 2 cut(s) 134, 269
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 470, 535
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 2 cut(s) 121, 423
BisI GCNGC 3 cut(s) 161, 164, 227
BlsI GCNGC 3 cut(s) 162, 165, 228
Bme1390I CCNGG 3 cut(s) 134, 269, 286
BmeT110I CYCGRG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 3 cut(s) 134, 269, 286
BmsI GCATC 4 cut(s) 61, 105, 308, 367
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 25, 457
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 2 cut(s) 134, 269
BseCI ATCGAT 1 cut(s) 81
BseGI GGATG 3 cut(s) 60, 76, 96
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 147, 399
BseNI ACTGG 2 cut(s) 25, 457
BseXI GCAGC 3 cut(s) 172, 175, 238
BsgI GTGCAG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 470, 535
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 4 cut(s) 78, 253, 294, 559
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 148, 400
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 2 cut(s) 86, 554
BspT107I GGYRCC 1 cut(s) 129
BsrI ACTGG 2 cut(s) 25, 457
BssMI GATC 4 cut(s) 78, 253, 294, 559
Bst2UI CCWGG 2 cut(s) 134, 269
Bst4CI ACNGT 3 cut(s) 106, 275, 481
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 156, 408
BstF5I GGATG 3 cut(s) 60, 76, 96
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 2 cut(s) 52, 252
BstKTI GATC 4 cut(s) 81, 256, 297, 562
BstMAI GTCTC 2 cut(s) 470, 535
BstMBI GATC 4 cut(s) 78, 253, 294, 559
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 4 cut(s) 11, 206, 223, 239
BstNI CCWGG 2 cut(s) 134, 269
BstSCI CCNGG 3 cut(s) 132, 267, 284
BstSFI CTRYAG 2 cut(s) 121, 423
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 172, 175, 238
BstXI CCANNNNNNTGG 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 3 cut(s) 60, 76, 96
BtsIMutI CAGTG 2 cut(s) 18, 450
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 2 cut(s) 52, 252
ClaI ATCGAT 1 cut(s) 81
CviAII CATG 1 cut(s) 485
DdeI CTNAG 2 cut(s) 156, 408
DpnI GATC 4 cut(s) 80, 255, 296, 561
DpnII GATC 4 cut(s) 78, 253, 294, 559
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 132, 267
FaeI CATG 1 cut(s) 488
FaiI YATR 8 cut(s) 123, 204, 264, 278, 486, 569, 571, 573
FatI CATG 1 cut(s) 484
Fnu4HI GCNGC 3 cut(s) 161, 164, 227
FokI GGATG 3 cut(s) 47, 83, 83
Fsp4HI GCNGC 3 cut(s) 161, 164, 227
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 51, 251
GluI GCNGC 3 cut(s) 161, 164, 227
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 286
HhaI GCGC 2 cut(s) 52, 252
Hin1II CATG 1 cut(s) 488
Hin6I GCGC 2 cut(s) 50, 250
HinP1I GCGC 2 cut(s) 50, 250
HinfI GANTC 3 cut(s) 90, 329, 383
HpaII CCGG 1 cut(s) 286
HphI GGTGA 2 cut(s) 443, 467
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 3 cut(s) 304, 409, 535
Hpy188III TCNNGA 6 cut(s) 170, 236, 257, 310, 362, 380
Hpy8I GTNNAC 1 cut(s) 500
Hpy99I CGWCG 1 cut(s) 186
HpyCH4III ACNGT 3 cut(s) 106, 275, 481
HpyCH4IV ACGT 2 cut(s) 140, 391
HpyCH4V TGCA 3 cut(s) 321, 389, 484
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 206, 223, 239
HpyF3I CTNAG 2 cut(s) 156, 408
HpySE526I ACGT 2 cut(s) 140, 391
Hsp92II CATG 1 cut(s) 488
HspAI GCGC 2 cut(s) 50, 250
Kzo9I GATC 4 cut(s) 78, 253, 294, 559
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 3 cut(s) 172, 175, 238
LweI GCATC 4 cut(s) 61, 105, 308, 367
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 140, 391
MalI GATC 4 cut(s) 80, 255, 296, 561
MboI GATC 4 cut(s) 78, 253, 294, 559
MboII GAAGA 3 cut(s) 338, 503, 504
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 235
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 144, 368, 416, 458, 525
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 7 cut(s) 61, 65, 120, 144, 391, 403, 458
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 505, 572
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 3 cut(s) 134, 269, 286
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 2 cut(s) 134, 269
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 11, 206, 223, 239
NciI CCSGG 1 cut(s) 286
NdeII GATC 4 cut(s) 78, 253, 294, 559
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 234
PctI GAATGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 329, 383
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 3 cut(s) 162, 165, 228
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 132, 267
PspGI CCWGG 2 cut(s) 132, 267
PspN4I GGNNCC 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 479
PvuI CGATCG 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 505, 572
SatI GCNGC 3 cut(s) 161, 164, 227
Sau3AI GATC 4 cut(s) 78, 253, 294, 559
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 3 cut(s) 134, 269, 286
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 4 cut(s) 61, 105, 308, 367
SfcI CTRYAG 2 cut(s) 121, 423
Sfr274I CTCGAG 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 505, 572
SmlI CTYRAG 2 cut(s) 234, 345
SmoI CTYRAG 2 cut(s) 234, 345
Sse9I AATT 5 cut(s) 144, 368, 416, 458, 525
SsiI CCGC 1 cut(s) 94
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 132, 267, 284
TaaI ACNGT 3 cut(s) 106, 275, 481
TaiI ACGT 2 cut(s) 143, 394
TaqI TCGA 5 cut(s) 81, 181, 235, 256, 311
TasI AATT 5 cut(s) 144, 368, 416, 458, 525
TfiI GAWTC 2 cut(s) 329, 383
TscAI CASTG 2 cut(s) 25, 457
TseI GCWGC 3 cut(s) 160, 163, 226
TspDTI ATGAA 2 cut(s) 99, 203
TspRI CASTG 2 cut(s) 25, 457
XhoI CTCGAG 1 cut(s) 234
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.