FvH4_3g19221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000314
Physical Location & Seq
Reverse (-)
12412246 .. 12414258
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19221.t1

Sequence Viewer

Length: 921 bp
ATGGAAGGTGGTAGTCAAGAAGCTACTGGATATGATCATAATCAAAGATATGGTCAATTCAACCTAGCTACTGGACGTTTGCATGGAATCGGTCAAACCCTACATCAAATCCCCAGGCCAATCCGTGGCTTCACATTCCAATATAATTGGAGTCTCTGCATGCAAGTTCAAAGGCCAAATTATGGCTTTAGTACTGTATGTGGGAAACGTTTTTACTCTCATAATTGCAAGTTTATTATACATGGGTGTAAAGTCGAGTATTCTCAATGTCATCTCACTCTAGTGTGCAGCAGGGACTTGGCGGCATATGAACATGATGCTCATGGGTTTCATATATCTGCATCAGAGGCAGAGGTGGATTCGTTGGACTGTGGTGACTCAAAATTTGATTTTGACACAGAGCCAATTTATGATGAATATGATGAAGACTATATGTTGGTGCGTCTGTCAGATAATCATACTCCACAAGAGTTCAAGACCAGTGAAGCTCCTGATATGCCCTGCTCAACACTTGGAAATTCTCGACGACAAGAGTCTCAAGCCGAGAACATAACGGCGACGAGGCTTGGAGTGAAGCATTGGTGGCCTCCCCCGTGGCCTTACGAAGGCCGTTCGCCGACATGGTCCATTGGTTTGATTCTCTTTGGTTCACACCTGGGGGGGGCAGTGAAGTCACTCCATGATTCGAATGTCAAAAAGATGGTTCGCCATCGCCAAGAGCTCAAGCGAAGGGCAATTTTGAATCCATTCAAAGCGAACGTCTACTCAAGGTGCATCCCTTCGAGGTACATCCATGCGAGGTACATTTCTTCGAGGACATTATCTGCGCGAGGTGCATGTATAGTACAATATCTTCAAGGGCAGAGCAAGCGAAGTGCAAAAGTGTTTTTTCATATTGATTCAAGGCCAATGTACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

35.11

Weight (kDa)

8.74

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 125, 182
AccI GTMKAC 1 cut(s) 762
AccII CGCG 1 cut(s) 829
AciI CCGC 1 cut(s) 302
AclI AACGTT 1 cut(s) 208
AcsI RAATTY 2 cut(s) 383, 517
AfaI GTAC 5 cut(s) 193, 788, 803, 846, 914
AfiI CCNNNNNNNGG 4 cut(s) 125, 182, 605, 661
AgsI TTSAA 7 cut(s) 61, 170, 475, 742, 751, 857, 903
AjnI CCWGG 2 cut(s) 113, 654
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 4 cut(s) 23, 68, 488, 721
AluI AGCT 4 cut(s) 23, 68, 488, 721
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 2 cut(s) 158, 540
AoxI GGCC 6 cut(s) 116, 173, 584, 596, 607, 905
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 2 cut(s) 383, 517
ArsI GACNNNNNNTTYG 6 cut(s) 37, 69, 368, 400, 744, 776
Asp700I GAANNNNTTC 1 cut(s) 746
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 1 cut(s) 624
AsuHPI GGTGA 1 cut(s) 386
AsuII TTCGAA 1 cut(s) 686
AvaII GGWCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 723
BarI GAAGNNNNNNTAC 2 cut(s) 837, 869
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 1 cut(s) 300
BccI CCATC 2 cut(s) 694, 717
BceAI ACGGC 2 cut(s) 570, 594
BciT130I CCWGG 2 cut(s) 115, 656
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 2 cut(s) 158, 540
BfaI CTAG 2 cut(s) 65, 281
BisI GCNGC 2 cut(s) 289, 303
BlsI GCNGC 2 cut(s) 290, 304
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 115, 656
Bme18I GGWCC 1 cut(s) 624
BmgT120I GGNCC 1 cut(s) 624
BmrFI CCNGG 2 cut(s) 115, 656
BmsI GCATC 3 cut(s) 307, 350, 783
BoxI GACNNNNGTC 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 3 cut(s) 522, 707, 751
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 4 cut(s) 113, 124, 593, 655
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 182, 605, 661
Bse1I ACTGG 3 cut(s) 31, 76, 480
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 2 cut(s) 115, 656
BseDI CCNNGG 4 cut(s) 113, 124, 593, 655
BseGI GGATG 2 cut(s) 774, 789
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 4 cut(s) 125, 182, 605, 661
BseNI ACTGG 3 cut(s) 31, 76, 480
BseXI GCAGC 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 829
BshFI GGCC 6 cut(s) 118, 175, 586, 598, 609, 907
BsiHKAI GWGCWC 1 cut(s) 723
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 4 cut(s) 125, 182, 605, 661
BsmAI GTCTC 2 cut(s) 158, 540
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 6 cut(s) 118, 175, 586, 598, 609, 907
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 302
BspANI GGCC 6 cut(s) 118, 175, 586, 598, 609, 907
BspFNI CGCG 1 cut(s) 829
BspT104I TTCGAA 1 cut(s) 686
BsrI ACTGG 3 cut(s) 31, 76, 480
BssECI CCNNGG 4 cut(s) 113, 124, 593, 655
BssMI GATC 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 115, 656
Bst4CI ACNGT 2 cut(s) 196, 371
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 161, 869
BstDSI CCRYGG 2 cut(s) 124, 593
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 2 cut(s) 774, 789
BstFNI CGCG 1 cut(s) 829
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 158, 540
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 4 cut(s) 347, 583, 833, 868
BstNI CCWGG 2 cut(s) 115, 656
BstNSI RCATGY 2 cut(s) 163, 840
BstPAI GACNNNNGTC 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 113, 654
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 432
BsuRI GGCC 6 cut(s) 118, 175, 586, 598, 609, 907
BtgI CCRYGG 2 cut(s) 124, 593
BtgZI GCGATG 1 cut(s) 695
BtsCI GGATG 2 cut(s) 774, 789
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 2 cut(s) 487, 672
Cac8I GCNNGC 2 cut(s) 161, 869
CfoI GCGC 1 cut(s) 829
Cfr13I GGNCC 1 cut(s) 624
CseI GACGC 1 cut(s) 431
Csp6I GTAC 5 cut(s) 192, 787, 802, 845, 913
CviAII CATG 9 cut(s) 83, 160, 242, 314, 323, 621, 680, 794, 837
CviQI GTAC 5 cut(s) 192, 787, 802, 845, 913
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 721
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 113, 654
EcoT38I GRGCYC 1 cut(s) 723
FaeI CATG 9 cut(s) 86, 163, 245, 317, 326, 624, 683, 797, 840
FaqI GGGAC 1 cut(s) 308
FatI CATG 9 cut(s) 82, 159, 241, 313, 322, 620, 679, 793, 836
FauNDI CATATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 2 cut(s) 289, 303
FokI GGATG 2 cut(s) 761, 776
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 2 cut(s) 289, 303
FspBI CTAG 2 cut(s) 65, 281
GlaI GCGC 1 cut(s) 828
GluI GCNGC 2 cut(s) 289, 303
HaeIII GGCC 6 cut(s) 118, 175, 586, 598, 609, 907
HgaI GACGC 1 cut(s) 431
HhaI GCGC 1 cut(s) 829
Hin1II CATG 9 cut(s) 86, 163, 245, 317, 326, 624, 683, 797, 840
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HinfI GANTC 9 cut(s) 87, 151, 359, 377, 533, 637, 683, 742, 899
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 650, 763
Hpy188I TCNGA 2 cut(s) 346, 451
Hpy188III TCNNGA 4 cut(s) 17, 475, 491, 522
Hpy8I GTNNAC 2 cut(s) 650, 763
Hpy99I CGWCG 2 cut(s) 528, 562
HpyAV CCTTC 3 cut(s) 599, 723, 789
HpyCH4III ACNGT 2 cut(s) 196, 371
HpyCH4IV ACGT 3 cut(s) 76, 208, 759
HpyCH4V TGCA 9 cut(s) 82, 159, 163, 228, 288, 341, 774, 836, 878
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 583, 833, 868
HpySE526I ACGT 3 cut(s) 76, 208, 759
Hsp92II CATG 9 cut(s) 86, 163, 245, 317, 326, 624, 683, 797, 840
HspAI GCGC 1 cut(s) 827
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 3 cut(s) 307, 350, 783
MaeI CTAG 2 cut(s) 65, 281
MaeII ACGT 3 cut(s) 76, 208, 759
MaeIII GTNAC 2 cut(s) 374, 672
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 437, 801, 845
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 8 cut(s) 56, 145, 178, 223, 383, 405, 517, 735
MlyI GAGTC 3 cut(s) 160, 371, 542
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 8 cut(s) 340, 346, 555, 597, 777, 792, 807, 824
MroXI GAANNNNTTC 1 cut(s) 746
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 115, 656
MvaI CCWGG 2 cut(s) 115, 656
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 4 cut(s) 347, 583, 833, 868
NdeI CATATG 1 cut(s) 307
NdeII GATC 1 cut(s) 34
NlaIII CATG 9 cut(s) 86, 163, 245, 317, 326, 624, 683, 797, 840
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 2 cut(s) 374, 672
NspI RCATGY 2 cut(s) 163, 840
NspV TTCGAA 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 281
PaeI GCATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 746
PfeI GAWTC 6 cut(s) 87, 359, 637, 683, 742, 899
PflFI GACNNNGTC 1 cut(s) 622
PflMI CCANNNNNTGG 2 cut(s) 125, 182
PkrI GCNGC 2 cut(s) 290, 304
PleI GAGTC 3 cut(s) 159, 371, 541
PpsI GAGTC 3 cut(s) 159, 371, 541
PshAI GACNNNNGTC 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 723
Psp1406I AACGTT 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 113, 654
PspGI CCWGG 2 cut(s) 113, 654
PspPI GGNCC 1 cut(s) 624
PsyI GACNNNGTC 1 cut(s) 622
RsaI GTAC 5 cut(s) 193, 788, 803, 846, 914
RsaNI GTAC 5 cut(s) 192, 787, 802, 845, 913
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 723
SatI GCNGC 2 cut(s) 289, 303
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 624
ScaI AGTACT 1 cut(s) 193
SchI GAGTC 3 cut(s) 160, 371, 542
ScrFI CCNGG 2 cut(s) 115, 656
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 3 cut(s) 307, 350, 783
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 3 cut(s) 537, 722, 766
SmoI CTYRAG 3 cut(s) 537, 722, 766
SphI GCATGC 1 cut(s) 163
Sse9I AATT 8 cut(s) 56, 145, 178, 223, 383, 405, 517, 735
SsiI CCGC 1 cut(s) 302
SspMI CTAG 2 cut(s) 65, 281
SstI GAGCTC 1 cut(s) 723
StyD4I CCNGG 2 cut(s) 113, 654
TaaI ACNGT 2 cut(s) 196, 371
TaiI ACGT 3 cut(s) 79, 211, 762
TaqI TCGA 5 cut(s) 255, 523, 686, 782, 812
TaqII GACCGA 1 cut(s) 80
TasI AATT 8 cut(s) 56, 145, 178, 223, 383, 405, 517, 735
TatI WGTACW 2 cut(s) 191, 844
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 6 cut(s) 87, 359, 637, 683, 742, 899
TscAI CASTG 2 cut(s) 487, 672
TseFI GTSAC 2 cut(s) 374, 672
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 2 cut(s) 374, 672
TspDTI ATGAA 5 cut(s) 320, 324, 429, 438, 881
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 487, 672
Tth111I GACNNNGTC 1 cut(s) 622
Van91I CCANNNNNTGG 2 cut(s) 125, 182
VpaK11BI GGWCC 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 2 cut(s) 383, 517
XceI RCATGY 2 cut(s) 163, 840
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 746
XspI CTAG 2 cut(s) 65, 281
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.