Rmu_sc0012291.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012291.1
OG0000314
Physical Location & Seq
Reverse (-)
31410 .. 33116
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012291.1_g000006.1.cds

Sequence Viewer

Length: 789 bp
atgacgacattacaacagaagaggcttttgtttcgaagcctatcccccttcgaggagacactcgcgatccttatggagaatgtcgagaaccatcgcaagaagatggacgcggatcttgccagagaaattgcaaaatcagaaaggctccgccgcgagtttaagcagcgtatgactctatacgcggagagtaccgggcagcaggttacacgaacagagggtaccttgaaggcgcaagctataaccatcgctgccgaacaggatgagcgccaaaggcaagtcatggtggccatcgcgagccaaaacaagcatacctcatcggagttcgcgaccttgcgcaaggaagaccctagcttgactactcaagtcagttcacagcagggcgaattggaaagccaaaaatcttcgcacgaagaggttgtttctgaggttgaattgcctacagatggaaataaacctaaatgcctcattgatgagtcacggccttacatagaggctttgcatggagaagatggtcaacaacataattgttcctctgacaatataattgtttcagaacaaatatatgatttctccactgatcaagccaaatgcgtggctgttaatcagatgcatggggggcatgatattgtccaggttcacccccttagtaaccagaagcagctgtatgatcaatttaattatggttatgctgctggacgtcatcatgaccaaggcgaccgtgaagagcgcggggccgcgagcaaatgggtgcaagcgactggcagcgaccaagtgaccgcggaggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.6

Weight (kDa)

5.34

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 700
Acc16I TGCGCA 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 190
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 218
AccII CGCG 9 cut(s) 65, 110, 153, 182, 293, 326, 729, 737, 779
AciI CCGC 8 cut(s) 110, 148, 151, 182, 729, 735, 777, 779
AclWI GGATC 2 cut(s) 61, 120
AcoI YGGCCR 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 2 cut(s) 190, 220
AfiI CCNNNNNNNGG 2 cut(s) 52, 443
AgsI TTSAA 2 cut(s) 226, 431
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 3 cut(s) 236, 351, 661
AluI AGCT 3 cut(s) 236, 351, 661
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 61, 120
AoxI GGCC 3 cut(s) 285, 479, 732
ApeKI GCWGC 6 cut(s) 163, 196, 248, 658, 689, 762
Asp718I GGTACC 1 cut(s) 218
AspLEI GCGC 4 cut(s) 232, 267, 336, 729
AspS9I GGNCC 1 cut(s) 732
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 629
AsuII TTCGAA 1 cut(s) 34
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 6 cut(s) 175, 208, 235, 670, 676, 774
BccI CCATC 6 cut(s) 97, 99, 251, 296, 437, 503
BceAI ACGGC 1 cut(s) 494
BciT130I CCWGG 1 cut(s) 632
BclI TGATCA 2 cut(s) 577, 667
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 190
BisI GCNGC 8 cut(s) 151, 164, 197, 249, 659, 690, 735, 763
BlsI GCNGC 8 cut(s) 152, 165, 198, 250, 660, 691, 736, 764
Bme1390I CCNGG 2 cut(s) 193, 632
BmgT120I GGNCC 1 cut(s) 732
BmiI GGNNCC 3 cut(s) 146, 220, 733
BmrFI CCNGG 2 cut(s) 193, 632
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 697
BsaJI CCNNGG 2 cut(s) 709, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 443
Bse1I ACTGG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 2 cut(s) 709, 777
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 52, 443
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 6 cut(s) 175, 208, 235, 670, 676, 774
Bsh1236I CGCG 9 cut(s) 65, 110, 153, 182, 293, 326, 729, 737, 779
Bsh1285I CGRYCG 1 cut(s) 718
BshFI GGCC 3 cut(s) 287, 481, 734
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 718
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 52, 443
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 3 cut(s) 287, 481, 734
Bsp119I TTCGAA 1 cut(s) 34
Bsp143I GATC 4 cut(s) 66, 112, 577, 667
Bsp68I TCGCGA 3 cut(s) 65, 293, 326
BspACI CCGC 8 cut(s) 110, 148, 151, 182, 729, 735, 777, 779
BspANI GGCC 3 cut(s) 287, 481, 734
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 9 cut(s) 65, 110, 153, 182, 293, 326, 729, 737, 779
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 3 cut(s) 146, 220, 733
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 2 cut(s) 61, 120
BspQI GCTCTTC 1 cut(s) 717
BspT104I TTCGAA 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 709, 777
BssMI GATC 4 cut(s) 66, 112, 577, 667
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 1 cut(s) 709
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 719
Bst6I CTCTTC 3 cut(s) 14, 405, 717
BstACI GRCGYC 1 cut(s) 697
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 4 cut(s) 234, 295, 739, 753
BstDEI CTNAG 2 cut(s) 423, 644
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 9 cut(s) 65, 110, 153, 182, 293, 326, 729, 737, 779
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 4 cut(s) 232, 267, 336, 729
BstKTI GATC 4 cut(s) 69, 115, 580, 670
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 66, 112, 577, 667
BstMCI CGRYCG 1 cut(s) 718
BstMWI GCNNNNNNNGC 3 cut(s) 116, 271, 616
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 2 cut(s) 191, 630
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 9 cut(s) 65, 110, 153, 182, 293, 326, 729, 737, 779
BstV1I GCAGC 6 cut(s) 175, 208, 235, 670, 676, 774
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 3 cut(s) 287, 481, 734
BtgI CCRYGG 1 cut(s) 777
BtgZI GCGATG 3 cut(s) 77, 229, 274
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 573
BtuMI TCGCGA 3 cut(s) 65, 293, 326
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 4 cut(s) 234, 295, 739, 753
CciI TCATGA 1 cut(s) 703
CfoI GCGC 4 cut(s) 232, 267, 336, 729
Cfr13I GGNCC 1 cut(s) 732
Cfr42I CCGCGG 1 cut(s) 780
CseI GACGC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 189, 219
CviAII CATG 5 cut(s) 280, 500, 611, 620, 704
CviQI GTAC 2 cut(s) 189, 219
DdeI CTNAG 2 cut(s) 423, 644
DpnI GATC 4 cut(s) 68, 114, 579, 669
DpnII GATC 4 cut(s) 66, 112, 577, 667
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 14, 405, 717
EarI CTCTTC 3 cut(s) 14, 405, 717
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 709
EcoT22I ATGCAT 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 5 cut(s) 283, 503, 614, 623, 707
FatI CATG 5 cut(s) 279, 499, 610, 619, 703
FauI CCCGC 1 cut(s) 722
FbaI TGATCA 2 cut(s) 577, 667
Fnu4HI GCNGC 8 cut(s) 151, 164, 197, 249, 659, 690, 735, 763
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 8 cut(s) 151, 164, 197, 249, 659, 690, 735, 763
FspBI CTAG 1 cut(s) 348
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 4 cut(s) 231, 266, 335, 728
GluI GCNGC 8 cut(s) 151, 164, 197, 249, 659, 690, 735, 763
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 3 cut(s) 287, 481, 734
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 116
HhaI GCGC 4 cut(s) 232, 267, 336, 729
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 5 cut(s) 283, 503, 614, 623, 707
Hin6I GCGC 4 cut(s) 230, 265, 334, 727
HinP1I GCGC 4 cut(s) 230, 265, 334, 727
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HinfI GANTC 2 cut(s) 172, 473
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 3 cut(s) 371, 515, 637
Hpy188I TCNGA 6 cut(s) 139, 319, 424, 535, 553, 606
Hpy188III TCNNGA 5 cut(s) 64, 85, 292, 325, 704
Hpy8I GTNNAC 3 cut(s) 371, 515, 637
HpyAV CCTTC 2 cut(s) 58, 220
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 4 cut(s) 131, 499, 610, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 271, 616
HpyF3I CTNAG 2 cut(s) 423, 644
HpySE526I ACGT 1 cut(s) 697
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 5 cut(s) 283, 503, 614, 623, 707
HspAI GCGC 4 cut(s) 230, 265, 334, 727
KpnI GGTACC 1 cut(s) 222
Ksp22I TGATCA 2 cut(s) 577, 667
KspI CCGCGG 1 cut(s) 780
Kzo9I GATC 4 cut(s) 66, 112, 577, 667
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 6 cut(s) 175, 208, 235, 670, 676, 774
LweI GCATC 1 cut(s) 597
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 4 cut(s) 202, 474, 647, 772
MalI GATC 4 cut(s) 68, 114, 579, 669
MboI GATC 4 cut(s) 66, 112, 577, 667
MboII GAAGA 7 cut(s) 31, 112, 353, 393, 422, 518, 734
MflI RGATCY 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 7 cut(s) 126, 383, 431, 523, 543, 671, 676
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 2 cut(s) 166, 482
Mox20I TGGCCA 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 612
MscI TGGCCA 1 cut(s) 287
MseI TTAA 3 cut(s) 159, 600, 675
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 2 cut(s) 661, 779
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 193, 632
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 9 cut(s) 65, 110, 153, 182, 293, 326, 729, 737, 779
MwoI GCNNNNNNNGC 3 cut(s) 116, 271, 616
NciI CCSGG 1 cut(s) 193
NdeII GATC 4 cut(s) 66, 112, 577, 667
NlaIII CATG 5 cut(s) 283, 503, 614, 623, 707
NlaIV GGNNCC 3 cut(s) 146, 220, 733
NmuCI GTSAC 2 cut(s) 474, 772
NruI TCGCGA 3 cut(s) 65, 293, 326
NsbI TGCGCA 1 cut(s) 335
NsiI ATGCAT 1 cut(s) 612
NspV TTCGAA 1 cut(s) 34
PagI TCATGA 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PkrI GCNGC 8 cut(s) 152, 165, 198, 250, 660, 691, 736, 764
PleI GAGTC 2 cut(s) 166, 481
PpsI GAGTC 2 cut(s) 166, 481
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 3 cut(s) 146, 220, 733
PspPI GGNCC 1 cut(s) 732
PsrI GAACNNNNNNTAC 2 cut(s) 202, 234
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 661
RruI TCGCGA 3 cut(s) 65, 293, 326
RsaI GTAC 2 cut(s) 190, 220
RsaNI GTAC 2 cut(s) 189, 219
SacII CCGCGG 1 cut(s) 780
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 159, 600, 675
SatI GCNGC 8 cut(s) 151, 164, 197, 249, 659, 690, 735, 763
Sau3AI GATC 4 cut(s) 66, 112, 577, 667
Sau96I GGNCC 1 cut(s) 732
SchI GAGTC 2 cut(s) 166, 482
ScrFI CCNGG 2 cut(s) 193, 632
SfaNI GCATC 1 cut(s) 597
SfcI CTRYAG 1 cut(s) 438
Sfr303I CCGCGG 1 cut(s) 780
SfuI TTCGAA 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
Sse9I AATT 7 cut(s) 126, 383, 431, 523, 543, 671, 676
SsiI CCGC 8 cut(s) 110, 148, 151, 182, 729, 735, 777, 779
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 191, 630
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 1 cut(s) 700
TaqI TCGA 3 cut(s) 34, 51, 84
TasI AATT 7 cut(s) 126, 383, 431, 523, 543, 671, 676
TauI GCSGC 2 cut(s) 153, 737
Tru1I TTAA 3 cut(s) 159, 600, 675
Tru9I TTAA 3 cut(s) 159, 600, 675
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 474, 772
TseI GCWGC 6 cut(s) 163, 196, 248, 658, 689, 762
Tsp45I GTSAC 2 cut(s) 474, 772
TspRI CASTG 1 cut(s) 580
XspI CTAG 1 cut(s) 348
ZraI GACGTC 1 cut(s) 698
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.