Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

9449431 .. 9450612

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGCCCATTCCCATTCCGAGAGAATGCGATCATAGAAGAGCGGCTTGATATCCTTCAAAAGAATTCTACCGCATACCATGAGAATGCGAGAAAAGCTCTTGCGGAGGACCGTCGACGGCTCGATGAGTTCATGATTTCGTTCGAGAGGCTCGAGTTGGGGGCACAACAAGCAAAGGCAAATTGGAACGTCAAGAACACTGCTCGCGAAGAGGTCGTTTTTGAGACTAACTTGCCTATAAGTGACAATCAACCTAAGGGTCTCATCGTTGGCGACAAAGCCGATCTTGGAACATCTTCATCTCCAAAAGTGAAATTGAAGATCATGTTTCGCCAACCAACAAAGATACTTGGGGAGCAAGATTACTCCTCCTACGAGCCAAATTTTTCCCAAGTTTTCGATGCGAAGTATCTTTGTTCCTTTCCTACAAGCTCTCACAAGAGGGGTTTTCATGCTATAACATTTGACACATCGGAGCTTGGAGAAAAGCATAGATGGCCACCCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

169

Amino Acids

19.44

Weight (kDa)

6.91

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	43, 72, 104
AcoI	YGGCCR	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	64, 382
AgsI	TTSAA	2 cut(s)	59, 319
AleI	CACNNNNGTG	1 cut(s)	505
AluBI	AGCT	3 cut(s)	98, 432, 478
AluI	AGCT	3 cut(s)	98, 432, 478
Alw26I	GTCTC	2 cut(s)	218, 266
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	497
ApoI	RAATTY	2 cut(s)	64, 382
Asp700I	GAANNNNTTC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	255
BaeGI	GKGCMC	2 cut(s)	8, 166
BalI	TGGCCA	1 cut(s)	499
BccI	CCATC	1 cut(s)	489
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	218, 266
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	391
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BsaI	GGTCTC	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	2 cut(s)	8, 166
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	152
BsmAI	GTCTC	2 cut(s)	218, 266
BsmI	GAATGC	2 cut(s)	31, 91
BsnI	GGCC	1 cut(s)	499
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	8, 166
Bsp143I	GATC	3 cut(s)	30, 283, 321
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	3 cut(s)	43, 72, 104
BspANI	GGCC	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	132
BspQI	GCTCTTC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	43
BssMI	GATC	3 cut(s)	30, 283, 321
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	2 cut(s)	33, 204
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	33, 286, 324
BstMAI	GTCTC	2 cut(s)	218, 266
BstMBI	GATC	3 cut(s)	30, 283, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 170, 496
BstSLI	GKGCMC	2 cut(s)	8, 166
BstUI	CGCG	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	205
CciI	TCATGA	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	4 cut(s)	80, 133, 325, 452
CviJI	RGCY	9 cut(s)	46, 98, 121, 151, 281, 379, 432, 478, 499
CviKI_1	RGCY	9 cut(s)	46, 98, 121, 151, 281, 379, 432, 478, 499
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	32, 285, 323
DpnII	GATC	3 cut(s)	30, 283, 321
EaeI	YGGCCR	1 cut(s)	497
Eam1104I	CTCTTC	2 cut(s)	33, 204
EarI	CTCTTC	2 cut(s)	33, 204
Eco31I	GGTCTC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	52
FaeI	CATG	4 cut(s)	83, 136, 328, 455
FaiI	YATR	9 cut(s)	35, 76, 81, 134, 239, 326, 453, 458, 492
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 270, 302
FatI	CATG	4 cut(s)	79, 132, 324, 451
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	499
Hin1II	CATG	4 cut(s)	83, 136, 328, 455
HincII	GTYRAC	1 cut(s)	116
HindII	GTYRAC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	20, 475
Hpy188III	TCNNGA	4 cut(s)	133, 145, 193, 206
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	2 cut(s)	117, 120
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 170, 496
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	83, 136, 328, 455
Kzo9I	GATC	3 cut(s)	30, 283, 321
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	355, 475
LweI	GCATC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	3 cut(s)	32, 285, 323
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	3 cut(s)	30, 283, 321
MboII	GAAGA	4 cut(s)	50, 221, 288, 331
MhlI	GDGCHC	2 cut(s)	8, 166
MlsI	TGGCCA	1 cut(s)	499
MluCI	AATT	4 cut(s)	64, 181, 314, 382
MluNI	TGGCCA	1 cut(s)	499
MnlI	CCTC	5 cut(s)	100, 141, 205, 379, 435
Mox20I	TGGCCA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	499
MslI	CAYNNNNRTG	2 cut(s)	84, 505
Msp20I	TGGCCA	1 cut(s)	499
Mva1269I	GAATGC	2 cut(s)	31, 91
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	95, 170, 496
NdeII	GATC	3 cut(s)	30, 283, 321
NlaIII	CATG	4 cut(s)	83, 136, 328, 455
NmuCI	GTSAC	1 cut(s)	242
NruI	TCGCGA	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	2 cut(s)	31, 91
PdmI	GAANNNNTTC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	109
PspXI	VCTCGAGB	1 cut(s)	152
RruI	TCGCGA	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	84, 505
SalI	GTCGAC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	3 cut(s)	30, 283, 321
Sau96I	GGNCC	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	8, 166
SetI	ASST	6 cut(s)	100, 192, 216, 256, 434, 480
SfaNI	GCATC	1 cut(s)	391
Sfr274I	CTCGAG	1 cut(s)	152
SgrDI	CGTCGACG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	2 cut(s)	84, 505
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	64, 181, 314, 382
SsiI	CCGC	3 cut(s)	43, 72, 104
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	115, 123, 144, 153, 399
TasI	AATT	4 cut(s)	64, 181, 314, 382
TauI	GCSGC	1 cut(s)	46
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	121, 288, 440
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	64, 382
XhoI	CTCGAG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.