FvH4_2g34051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000314
Physical Location & Seq
Reverse (-)
25394148 .. 25397671
3524 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34051.t1

Sequence Viewer

Length: 774 bp
ATGGCTGCCATCTTCAAGCAACACGCTGAGGAAACGGCTCCTAGAGAGGCTGCCGAAGAAAAGGAAAAAGCCGAAAGGAAGGCCTTTCTAGAGGAGTCTCGTCAACGGATGCCGGACAGTCCACTTCGCCGATTCAGCTGGAATGATCCAGGACGACCTAGTAGGCGAGCCTTATATCAACAGAAAGCTCTAGATGTCTATTTTCCAGAGGATTTTACGGTTCATCATTCCGACATTCCTAGAGAGAGTTATGGCAGTTTGAATACAGACAGGATCTACTCAAGGCCGATCCACGACCTTGTTCGGTGTTTGCTAACTTCAATGATGCATGACTTTAGACCCTTCTTGAGGCGTCTTGGTCATTATTTAGGCCAACACCTGTGGCCTCCAAAAAAAAATTCAAGGCTATGCGATCGTTCGCCGACATGGTCCTTTTGTTTGACTCTCATTGGTTCGCACTGGGGGGCAGCGAAGTCACTCCATGATCTGAATATCAAAAAGTTGGTTCGCCATCGCCAAGAGCTCAAGCGGAGGTCATTTTTTGAATCCAGTCAAAGTGGACGTCTACTCGAGGTACATCCCTTCGAGGTACATCCATGGCGAGTCAACAAGTTTTGGCCACGAGGTATATCCGTGCGAGGTACATTTCTTCGAGGACATTATCTACTCGAGGTATATGCATGGTACATTGTCTTCAAGAGTAGAGCAGGCGAGGTGCATGATATTATTCGTAGTGATTCAAGTCCAAGGTACTTGTACGTGTTAAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

30.5

Weight (kDa)

9.89

Isoelectric Point (pI)

66.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 565
AccI GTMKAC 1 cut(s) 565
AciI CCGC 1 cut(s) 529
AclWI GGATC 3 cut(s) 140, 281, 283
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 1 cut(s) 397
AcyI GRCGYC 2 cut(s) 352, 562
AfaI GTAC 6 cut(s) 576, 591, 643, 686, 752, 758
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 7 cut(s) 16, 262, 321, 402, 545, 697, 741
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AluBI AGCT 3 cut(s) 138, 188, 523
AluI AGCT 3 cut(s) 138, 188, 523
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 3 cut(s) 140, 281, 283
Ama87I CYCGRG 2 cut(s) 569, 668
AoxI GGCC 5 cut(s) 81, 284, 370, 383, 617
ApeKI GCWGC 3 cut(s) 5, 50, 467
ApoI RAATTY 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AspS9I GGNCC 1 cut(s) 429
AvaI CYCGRG 2 cut(s) 569, 668
AvaII GGWCC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 619
BanII GRGCYC 1 cut(s) 525
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 525
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 37, 479
BccI CCATC 2 cut(s) 17, 519
BceAI ACGGC 1 cut(s) 51
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 5 cut(s) 42, 89, 159, 191, 240
BisI GCNGC 3 cut(s) 6, 51, 468
BlsI GCNGC 3 cut(s) 7, 52, 469
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 429
BmeT110I CYCGRG 2 cut(s) 569, 668
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 2 cut(s) 99, 315
BmuI ACTGGG 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 27
BpuEI CTTGAG 3 cut(s) 265, 367, 509
BsaAI YACGTR 1 cut(s) 760
BsaHI GRCGYC 2 cut(s) 352, 562
BsaJI CCNNGG 2 cut(s) 596, 746
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 464, 549
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 596, 746
BseGI GGATG 3 cut(s) 114, 577, 592
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 464, 549
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 37, 479
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 5 cut(s) 83, 286, 372, 385, 619
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 2 cut(s) 569, 668
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 5 cut(s) 83, 286, 372, 385, 619
BsoBI CYCGRG 2 cut(s) 569, 668
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 5 cut(s) 145, 273, 288, 412, 484
Bsp19I CCATGG 1 cut(s) 596
BspACI CCGC 1 cut(s) 529
BspANI GGCC 5 cut(s) 83, 286, 372, 385, 619
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 3 cut(s) 140, 281, 283
BsrI ACTGG 2 cut(s) 464, 549
BssECI CCNNGG 2 cut(s) 596, 746
BssMI GATC 5 cut(s) 145, 273, 288, 412, 484
BssNI GRCGYC 2 cut(s) 352, 562
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 2 cut(s) 596, 746
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 119, 220
BstACI GRCGYC 2 cut(s) 352, 562
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 2 cut(s) 168, 709
BstDEI CTNAG 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 596
BstENI CCTNNNNNAGG 1 cut(s) 346
BstF5I GGATG 3 cut(s) 114, 577, 592
BstKTI GATC 5 cut(s) 148, 276, 291, 415, 487
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 5 cut(s) 145, 273, 288, 412, 484
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 37, 479
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 5 cut(s) 83, 286, 372, 385, 619
BtgI CCRYGG 1 cut(s) 596
BtgZI GCGATG 1 cut(s) 497
BtsCI GGATG 3 cut(s) 114, 577, 592
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 168, 709
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 1 cut(s) 341
Csp6I GTAC 6 cut(s) 575, 590, 642, 685, 751, 757
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 7 cut(s) 329, 426, 482, 597, 681, 719, 771
CviQI GTAC 6 cut(s) 575, 590, 642, 685, 751, 757
DdeI CTNAG 1 cut(s) 27
DpnI GATC 5 cut(s) 147, 275, 290, 414, 486
DpnII GATC 5 cut(s) 145, 273, 288, 412, 484
EaeI YGGCCR 1 cut(s) 617
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 2 cut(s) 596, 746
Eco147I AGGCCT 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 523
Eco88I CYCGRG 2 cut(s) 569, 668
EcoICRI GAGCTC 1 cut(s) 523
EcoNI CCTNNNNNAGG 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 596, 746
EcoT22I ATGCAT 3 cut(s) 330, 682, 772
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 2 cut(s) 596, 746
FaeI CATG 7 cut(s) 332, 429, 485, 600, 684, 722, 774
FatI CATG 7 cut(s) 328, 425, 481, 596, 680, 718, 770
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 3 cut(s) 6, 51, 468
FokI GGATG 3 cut(s) 121, 564, 579
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 3 cut(s) 6, 51, 468
FspBI CTAG 5 cut(s) 42, 89, 159, 191, 240
GluI GCNGC 3 cut(s) 6, 51, 468
HaeIII GGCC 5 cut(s) 83, 286, 372, 385, 619
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 341
Hin1I GRCGYC 2 cut(s) 352, 562
Hin1II CATG 7 cut(s) 332, 429, 485, 600, 684, 722, 774
HincII GTYRAC 2 cut(s) 104, 607
HindII GTYRAC 2 cut(s) 104, 607
HinfI GANTC 6 cut(s) 95, 132, 442, 545, 603, 737
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 5 cut(s) 104, 122, 560, 566, 607
Hpy188I TCNGA 2 cut(s) 232, 489
Hpy188III TCNNGA 5 cut(s) 89, 191, 206, 346, 697
Hpy8I GTNNAC 5 cut(s) 104, 122, 560, 566, 607
HpyAV CCTTC 3 cut(s) 73, 352, 592
HpyCH4III ACNGT 2 cut(s) 119, 220
HpyCH4IV ACGT 2 cut(s) 562, 759
HpyCH4V TGCA 4 cut(s) 328, 680, 718, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 2 cut(s) 562, 759
Hsp92I GRCGYC 2 cut(s) 352, 562
Hsp92II CATG 7 cut(s) 332, 429, 485, 600, 684, 722, 774
Kzo9I GATC 5 cut(s) 145, 273, 288, 412, 484
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 2 cut(s) 37, 479
LweI GCATC 2 cut(s) 99, 315
MaeI CTAG 5 cut(s) 42, 89, 159, 191, 240
MaeII ACGT 2 cut(s) 562, 759
MaeIII GTNAC 1 cut(s) 474
MalI GATC 5 cut(s) 147, 275, 290, 414, 486
MboI GATC 5 cut(s) 145, 273, 288, 412, 484
MboII GAAGA 4 cut(s) 4, 68, 641, 685
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 525
MlsI TGGCCA 1 cut(s) 619
MluCI AATT 1 cut(s) 397
MluNI TGGCCA 1 cut(s) 619
MlyI GAGTC 3 cut(s) 104, 436, 612
MmeI TCCRAC 1 cut(s) 255
Mox20I TGGCCA 1 cut(s) 619
Mph1103I ATGCAT 3 cut(s) 330, 682, 772
MscI TGGCCA 1 cut(s) 619
MseI TTAA 1 cut(s) 764
Msp20I TGGCCA 1 cut(s) 619
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 596
NdeII GATC 5 cut(s) 145, 273, 288, 412, 484
NlaIII CATG 7 cut(s) 332, 429, 485, 600, 684, 722, 774
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 474
NsiI ATGCAT 3 cut(s) 330, 682, 772
PaeR7I CTCGAG 2 cut(s) 569, 668
PceI AGGCCT 1 cut(s) 83
PfeI GAWTC 3 cut(s) 132, 545, 737
PflFI GACNNNGTC 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 3 cut(s) 7, 52, 469
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 3 cut(s) 103, 436, 611
PpsI GAGTC 3 cut(s) 103, 436, 611
Ppu21I YACGTR 1 cut(s) 760
Psp124BI GAGCTC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 429
PspXI VCTCGAGB 2 cut(s) 569, 668
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 427
PvuI CGATCG 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 138
RsaI GTAC 6 cut(s) 576, 591, 643, 686, 752, 758
RsaNI GTAC 6 cut(s) 575, 590, 642, 685, 751, 757
SacI GAGCTC 1 cut(s) 525
SaqAI TTAA 1 cut(s) 764
SatI GCNGC 3 cut(s) 6, 51, 468
Sau3AI GATC 5 cut(s) 145, 273, 288, 412, 484
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 3 cut(s) 104, 436, 612
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 2 cut(s) 99, 315
Sfr274I CTCGAG 2 cut(s) 569, 668
SinI GGWCC 1 cut(s) 429
SlaI CTCGAG 2 cut(s) 569, 668
SmlI CTYRAG 5 cut(s) 280, 346, 524, 569, 668
SmoI CTYRAG 5 cut(s) 280, 346, 524, 569, 668
Sse9I AATT 1 cut(s) 397
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 1 cut(s) 529
SspMI CTAG 5 cut(s) 42, 89, 159, 191, 240
SstI GAGCTC 1 cut(s) 525
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 2 cut(s) 596, 746
TaaI ACNGT 2 cut(s) 119, 220
TaiI ACGT 2 cut(s) 565, 762
TaqI TCGA 4 cut(s) 570, 585, 652, 669
TasI AATT 1 cut(s) 397
TfiI GAWTC 3 cut(s) 132, 545, 737
Tru1I TTAA 1 cut(s) 764
Tru9I TTAA 1 cut(s) 764
TscAI CASTG 1 cut(s) 464
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 3 cut(s) 5, 50, 467
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 2 cut(s) 121, 622
TspRI CASTG 1 cut(s) 464
Tth111I GACNNNGTC 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 346
XapI RAATTY 1 cut(s) 397
XbaI TCTAGA 2 cut(s) 88, 190
XhoI CTCGAG 2 cut(s) 569, 668
XmiI GTMKAC 1 cut(s) 565
XspI CTAG 5 cut(s) 42, 89, 159, 191, 240
ZraI GACGTC 1 cut(s) 563
Zsp2I ATGCAT 3 cut(s) 330, 682, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.