Rroxscaffold_1G00040410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000314
Physical Location & Seq
Reverse (-)
58100201 .. 58105244
5044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040410.1

Sequence Viewer

Length: 339 bp
ATGCTCGTAAAGCTAAAGAGCAAACGGAGCAGAACGCTTGAGAAGCTAAAGAGCAATCACAAAAGCTTTTCTCGAGCAGCCGACAAACGCATCGCTCCACATGCCGCGAACATCACATCCGAATTCGCGACCTTGCGCAAGGAATATTCCATCTTGGTCGCTCAAGTCGGTTTGCATCAAAGCAAATTGGAAAGTCAAGAATCTATAGGCAAAGAGGTCGTTTCGAGGCATGGCCCACCTTACAATCATCAATTTTGCCTTGGCCATGCTACCGGACGTCATGGTGAAGGTGGCCACAATCATGGCCAACTTAATATGCGTGCGACGAGAGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.51

Weight (kDa)

10.28

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 280
Acc16I TGCGCA 1 cut(s) 137
AccII CGCG 2 cut(s) 107, 128
AciI CCGC 1 cut(s) 105
AcoI YGGCCR 3 cut(s) 262, 292, 304
AcsI RAATTY 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 277
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 3 cut(s) 13, 46, 66
AluI AGCT 3 cut(s) 13, 46, 66
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 4 cut(s) 232, 262, 292, 304
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 72
BalI TGGCCA 3 cut(s) 264, 294, 306
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 78, 105
BlsI GCNGC 2 cut(s) 79, 106
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 233
BmsI GCATC 2 cut(s) 99, 184
BpuEI CTTGAG 2 cut(s) 59, 147
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 2 cut(s) 107, 128
BshFI GGCC 4 cut(s) 234, 264, 294, 306
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 1 cut(s) 273
BsnI GGCC 4 cut(s) 234, 264, 294, 306
BsoBI CYCGRG 1 cut(s) 72
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 1 cut(s) 105
BspANI GGCC 4 cut(s) 234, 264, 294, 306
BspFNI CGCG 2 cut(s) 107, 128
BssECI CCNNGG 1 cut(s) 259
BssNI GRCGYC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 321
BstF5I GGATG 1 cut(s) 116
BstFNI CGCG 2 cut(s) 107, 128
BstHHI GCGC 1 cut(s) 138
BstMWI GCNNNNNNNGC 4 cut(s) 10, 27, 43, 101
BstNSI RCATGY 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 2 cut(s) 107, 128
BstV1I GCAGC 1 cut(s) 89
BstXI CCANNNNNNTGG 1 cut(s) 302
BsuRI GGCC 4 cut(s) 234, 264, 294, 306
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 116
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 321
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 5 cut(s) 101, 230, 266, 281, 302
CviJI RGCY 8 cut(s) 13, 46, 66, 80, 234, 264, 294, 306
CviKI_1 RGCY 8 cut(s) 13, 46, 66, 80, 234, 264, 294, 306
EaeI YGGCCR 3 cut(s) 262, 292, 304
Eco130I CCWWGG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 5 cut(s) 104, 233, 269, 284, 305
FaiI YATR 7 cut(s) 102, 206, 231, 267, 282, 303, 317
FatI CATG 5 cut(s) 100, 229, 265, 280, 301
Fnu4HI GCNGC 2 cut(s) 78, 105
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 78, 105
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 1 cut(s) 137
GluI GCNGC 2 cut(s) 78, 105
HaeIII GGCC 4 cut(s) 234, 264, 294, 306
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 5 cut(s) 104, 233, 269, 284, 305
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 273
HphI GGTGA 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 72, 127, 197
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 27, 43, 101
HpySE526I ACGT 1 cut(s) 277
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 5 cut(s) 104, 233, 269, 284, 305
HspAI GCGC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 27, 100
LpnPI CCDG 1 cut(s) 286
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 99, 184
MaeII ACGT 1 cut(s) 277
MlsI TGGCCA 3 cut(s) 264, 294, 306
MluCI AATT 3 cut(s) 122, 185, 251
MluNI TGGCCA 3 cut(s) 264, 294, 306
MnlI CCTC 2 cut(s) 208, 219
Mox20I TGGCCA 3 cut(s) 264, 294, 306
MscI TGGCCA 3 cut(s) 264, 294, 306
MseI TTAA 2 cut(s) 312, 337
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 3 cut(s) 264, 294, 306
MspI CCGG 1 cut(s) 273
MvnI CGCG 2 cut(s) 107, 128
MwoI GCNNNNNNNGC 4 cut(s) 10, 27, 43, 101
NlaIII CATG 5 cut(s) 104, 233, 269, 284, 305
NruI TCGCGA 1 cut(s) 128
NsbI TGCGCA 1 cut(s) 137
NspI RCATGY 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 72
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 79, 106
PspPI GGNCC 1 cut(s) 233
RruI TCGCGA 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 312, 337
SatI GCNGC 2 cut(s) 78, 105
Sau96I GGNCC 1 cut(s) 233
SetI ASST 8 cut(s) 15, 48, 68, 134, 219, 241, 280, 292
SfaNI GCATC 2 cut(s) 99, 184
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 3 cut(s) 38, 72, 162
SmoI CTYRAG 3 cut(s) 38, 72, 162
Sse9I AATT 3 cut(s) 122, 185, 251
SsiI CCGC 1 cut(s) 105
SspI AATATT 1 cut(s) 146
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 73, 224
TasI AATT 3 cut(s) 122, 185, 251
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 312, 337
Tru9I TTAA 2 cut(s) 312, 337
TseI GCWGC 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 40
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 72
ZraI GACGTC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.