Rh7CG413200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000314
Physical Location & Seq
Reverse (-)
53036889 .. 53037307
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG413200.1

Sequence Viewer

Length: 336 bp
ATGGTTGAAGAAAATGTAAGCTCTTGGGGAGGTGGTATAAAATCTTTTGAAAAAGCCATAAATGTCAACAAGATCATTCAAAAAGGGGTGGCAGAAATACCTACACACTTTTCTATTTTCAGAGAAGAGATGAAGTCACACCTGAATAAGATGAAGATGTTGAGACTTCAAAAAATACTGAAGGAAGCACGCCACTATAACTGCGACCATGACCTCAAAAAAGAAGTATCCATTGATGATCAGATAGAAACTCAGCCACTTGTTGTTCTTCCTTCAAATTTGGAGGCAAACATGGTTTCTCGAAAAGAAAGTCGACCTCAACAATCCGCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.72

Weight (kDa)

8.74

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 313
AccII CGCG 1 cut(s) 329
AciI CCGC 2 cut(s) 327, 329
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 200
AgsI TTSAA 5 cut(s) 8, 50, 80, 170, 276
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 277
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 157
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 72, 238
BspACI CCGC 2 cut(s) 327, 329
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 2 cut(s) 72, 238
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 2 cut(s) 75, 241
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 72, 238
BstUI CGCG 1 cut(s) 329
BsuI GTATCC 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 190
Cfr42I CCGCGG 1 cut(s) 330
CviAII CATG 2 cut(s) 209, 292
CviJI RGCY 4 cut(s) 21, 56, 256, 332
CviKI_1 RGCY 4 cut(s) 21, 56, 256, 332
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 74, 240
DpnII GATC 2 cut(s) 72, 238
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 200
FaeI CATG 2 cut(s) 212, 295
FaiI YATR 5 cut(s) 38, 59, 198, 210, 293
FatI CATG 2 cut(s) 208, 291
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 330
Hin1II CATG 2 cut(s) 212, 295
HincII GTYRAC 2 cut(s) 67, 314
HindII GTYRAC 2 cut(s) 67, 314
Hpy166II GTNNAC 2 cut(s) 67, 314
Hpy188I TCNGA 2 cut(s) 122, 243
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 2 cut(s) 67, 314
HpyAV CCTTC 2 cut(s) 175, 282
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 212, 295
Ksp22I TGATCA 1 cut(s) 238
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 2 cut(s) 72, 238
LpnPI CCDG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 74, 240
MboI GATC 2 cut(s) 72, 238
MboII GAAGA 4 cut(s) 20, 137, 166, 260
MluCI AATT 1 cut(s) 277
MnlI CCTC 4 cut(s) 23, 224, 277, 327
MspA1I CMGCKG 1 cut(s) 329
MvnI CGCG 1 cut(s) 329
NdeII GATC 2 cut(s) 72, 238
NlaIII CATG 2 cut(s) 212, 295
NmuCI GTSAC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 331
SacII CCGCGG 1 cut(s) 330
SalI GTCGAC 1 cut(s) 312
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 72, 238
SetI ASST 6 cut(s) 23, 34, 103, 144, 216, 319
Sfr303I CCGCGG 1 cut(s) 330
SgeI CNNG 8 cut(s) 36, 82, 154, 201, 221, 272, 304, 312
SgrBI CCGCGG 1 cut(s) 330
Sse9I AATT 1 cut(s) 277
SsiI CCGC 2 cut(s) 327, 329
TaqI TCGA 2 cut(s) 301, 313
TasI AATT 1 cut(s) 277
TauI GCSGC 1 cut(s) 332
TseFI GTSAC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 146, 167
XapI RAATTY 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.