FvH4_2g10242

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000314
Physical Location & Seq
Forward (+)
9088391 .. 9088959
569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10242.t1

Sequence Viewer

Length: 360 bp
ATGGTTGCCAGAGAGGCTGCCAGGAAAAAAGAGGAGGTCATGCTGGAAAAATGGGAGGCTGATGAAAAACACAGAGAGGCTAATGGAAGGCCCACGAAGAGGAGTTACAACGACATCGAGCTGCCTTCCAAGATTGAACCTGAGGTTGAGGCCGTTGAGATTATGGATAATCATCCTATCTCAAAAATTGACGTTGTTCCTCAGAAAGATGAACTTGAAAGTAGGACAGAACAGTCCATCTTAGAACAAGAAATCGGTTCGGGCACTGATGGCGAGCCACAATTTCGCATGACGTCTGAACAAGAAGCCATTCTCTCCATAGGCAGAGACTCATATGTAGTCACTGGTCAAACACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.58

Weight (kDa)

4.73

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AatII GACGTC 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 2 cut(s) 137, 218
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 321
AoxI GGCC 2 cut(s) 89, 150
ApeKI GCWGC 2 cut(s) 17, 121
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 90
AxyI CCTNAGG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 266
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbvI GCAGC 2 cut(s) 4, 108
BccI CCATC 2 cut(s) 245, 263
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 321
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 2 cut(s) 18, 122
BlsI GCNGC 2 cut(s) 19, 123
Bme1390I CCNGG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 132, 215
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 2 cut(s) 47, 115
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 2 cut(s) 4, 108
BshFI GGCC 2 cut(s) 91, 152
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 2 cut(s) 91, 152
Bsp1286I GDGCHC 1 cut(s) 266
BspANI GGCC 2 cut(s) 91, 152
BspCNI CTCAG 2 cut(s) 133, 214
BsrI ACTGG 1 cut(s) 349
BssNI GRCGYC 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 141, 201, 241
BstF5I GGATG 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 321
BstMWI GCNNNNNNNGC 2 cut(s) 14, 270
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 4, 108
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 91, 152
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 264, 342
Cac8I GCNNGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 90
CviAII CATG 2 cut(s) 40, 289
CviJI RGCY 8 cut(s) 17, 59, 80, 91, 121, 152, 277, 308
CviKI_1 RGCY 8 cut(s) 17, 59, 80, 91, 121, 152, 277, 308
DdeI CTNAG 3 cut(s) 141, 201, 241
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 43, 292
FaiI YATR 6 cut(s) 41, 164, 290, 320, 334, 336
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 2 cut(s) 39, 288
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 18, 122
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 18, 122
GluI GCNGC 2 cut(s) 18, 122
HaeIII GGCC 2 cut(s) 91, 152
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 2 cut(s) 43, 292
HinfI GANTC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 204, 298
HpyAV CCTTC 2 cut(s) 81, 135
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 2 cut(s) 192, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 270
HpyF3I CTNAG 3 cut(s) 141, 201, 241
HpySE526I ACGT 2 cut(s) 192, 293
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 2 cut(s) 43, 292
LpnPI CCDG 6 cut(s) 7, 22, 29, 34, 153, 330
Lsp1109I GCAGC 2 cut(s) 4, 108
MaeII ACGT 2 cut(s) 192, 293
MaeIII GTNAC 2 cut(s) 104, 340
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 2 cut(s) 186, 281
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 9 cut(s) 7, 25, 28, 49, 70, 93, 136, 142, 210
MroXI GAANNNNTTC 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 14, 270
NdeI CATATG 1 cut(s) 334
NlaIII CATG 2 cut(s) 43, 292
NmuCI GTSAC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 309
PkrI GCNGC 2 cut(s) 19, 123
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspPI GGNCC 1 cut(s) 90
SatI GCNGC 2 cut(s) 18, 122
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 266
SetI ASST 6 cut(s) 39, 123, 142, 147, 195, 296
Sse9I AATT 2 cut(s) 186, 281
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 2 cut(s) 195, 296
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 186, 281
TscAI CASTG 2 cut(s) 271, 349
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 2 cut(s) 17, 121
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 78, 225
TspRI CASTG 2 cut(s) 271, 349
XmnI GAANNNNTTC 1 cut(s) 309
ZraI GACGTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.