Rmu_sc0002119.1_g000036

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002119.1
OG0000314
Physical Location & Seq
Reverse (-)
202161 .. 203180
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002119.1_g000036.1.cds

Sequence Viewer

Length: 1020 bp
atgaacgagaatgctcagaaagctaaagagaaaaaggtgcagcatgctcgagaagctgaacagcgcgatcgagagcttacccagtggaggaagcagaaagaccaagagtggagaaaacaatatcagcatatcctggactgtatagcgacctggcacaaaactgcatcggagttcgcaaccttgtgcaaggaagatttcatcttggctgctcaagtaagttcgcatcaagacaaattggaaagtcaagaatctgcacgcaaagaggttgtttctgaggttgaattgcttacaggtggcgataaacctaaatgcatcactggtgaattacaaccttacacagaggctgtgcatggagaagacggtctacaagaatgttcttctgctaagaaaattgtctctaaacagatagctaatttctccactgatccagccatatatatggctactgatcagatgcatggggggcaagatatggcccatgttcatccatttgatcaacataagcaagttcatgatcaatttaattgtgactctgctgccggacgtcatcatgatcatgaagaagaccaatcaagacatggcccacttaattatcaatttagccttggccatgcttctggacgtcatgttggagttaaccaattaagtcatagccaacttaattatcaattaagttgtggtcttggaaagccaatatgtggctatattaatcaattcaatttcaaattcttcattagtgttttagggccaagcggtagctttgatatacatggacgatacatttgcaacccaccttgcaagaatagccagaaaaattattttagtggccaatttgtccttcgtgactgtaaatttgagtatcatcaatacaagttaactcttgtttacaattatcagactctaaatttcttgcaaaagaaatttgtctatgatactaaacagtccatagaagcgtctcaatatgatgcttggaaagaatatagaggcaaacaaatatttgatatgcctattttcgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

39.18

Weight (kDa)

6.67

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 547, 625
AccB7I CCANNNNNTGG 1 cut(s) 698
AccI GTMKAC 1 cut(s) 364
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 753
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 607, 826
AcsI RAATTY 4 cut(s) 725, 851, 904, 920
AcyI GRCGYC 2 cut(s) 544, 622
AfiI CCNNNNNNNGG 2 cut(s) 87, 698
AgsI TTSAA 3 cut(s) 281, 718, 724
AjnI CCWGG 2 cut(s) 132, 149
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
AluBI AGCT 5 cut(s) 23, 56, 76, 410, 759
AluI AGCT 5 cut(s) 23, 56, 76, 410, 759
Alw26I GTCTC 2 cut(s) 400, 960
AlwI GGATC 1 cut(s) 419
AlwNI CAGNNNCTG 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 5 cut(s) 474, 580, 607, 746, 826
ApeKI GCWGC 3 cut(s) 40, 206, 536
ApoI RAATTY 4 cut(s) 725, 851, 904, 920
ArsI GACNNNNNNTTYG 4 cut(s) 765, 797, 836, 868
AseI ATTAAT 1 cut(s) 708
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 3 cut(s) 475, 581, 746
AsuHPI GGTGA 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 1014
AvaI CYCGRG 1 cut(s) 48
BalI TGGCCA 2 cut(s) 609, 828
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbsI GAAGAC 2 cut(s) 363, 570
BbvI GCAGC 3 cut(s) 52, 193, 523
BcgI CGANNNNNNTGC 4 cut(s) 29, 63, 765, 799
BciT130I CCWGG 2 cut(s) 134, 151
BclI TGATCA 4 cut(s) 448, 493, 514, 553
BcoDI GTCTC 2 cut(s) 400, 960
BisI GCNGC 3 cut(s) 41, 207, 537
BlsI GCNGC 3 cut(s) 42, 208, 538
Bme1390I CCNGG 2 cut(s) 134, 151
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 475, 581, 746
BmrFI CCNGG 2 cut(s) 134, 151
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 5 cut(s) 173, 232, 321, 444, 955
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 2 cut(s) 363, 570
Bpu14I TTCGAA 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 195
BsaHI GRCGYC 2 cut(s) 544, 622
BsaJI CCNNGG 1 cut(s) 604
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 698
Bse1I ACTGG 2 cut(s) 82, 322
BseBI CCWGG 2 cut(s) 134, 151
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 2 cut(s) 87, 698
BseMII CTCAG 2 cut(s) 29, 264
BseNI ACTGG 2 cut(s) 82, 322
BseXI GCAGC 3 cut(s) 52, 193, 523
BsgI GTGCAG 2 cut(s) 59, 237
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 5 cut(s) 476, 582, 609, 748, 828
BsiEI CGRYCG 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 540
BslI CCNNNNNNNGG 2 cut(s) 87, 698
BsmAI GTCTC 2 cut(s) 400, 960
BsmBI CGTCTC 1 cut(s) 960
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 5 cut(s) 476, 582, 609, 748, 828
BsoBI CYCGRG 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 1014
Bsp143I GATC 6 cut(s) 67, 424, 448, 493, 514, 553
BspACI CCGC 1 cut(s) 753
BspANI GGCC 5 cut(s) 476, 582, 609, 748, 828
BspCNI CTCAG 2 cut(s) 28, 265
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 3 cut(s) 511, 550, 556
BspPI GGATC 1 cut(s) 419
BspT104I TTCGAA 1 cut(s) 1014
BsrI ACTGG 2 cut(s) 82, 322
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 6 cut(s) 67, 424, 448, 493, 514, 553
BssNI GRCGYC 2 cut(s) 544, 622
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 2 cut(s) 134, 151
Bst4CI ACNGT 4 cut(s) 140, 362, 848, 942
BstACI GRCGYC 2 cut(s) 544, 622
BstBI TTCGAA 1 cut(s) 1014
BstC8I GCNNGC 2 cut(s) 45, 256
BstDEI CTNAG 3 cut(s) 15, 273, 384
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 6 cut(s) 70, 427, 451, 496, 517, 556
BstMAI GTCTC 2 cut(s) 400, 960
BstMBI GATC 6 cut(s) 67, 424, 448, 493, 514, 553
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 20, 53, 463, 804
BstNI CCWGG 2 cut(s) 134, 151
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 132, 149
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 52, 193, 523
BstV2I GAAGAC 2 cut(s) 363, 570
BstXI CCANNNNNNTGG 2 cut(s) 439, 617
BsuRI GGCC 5 cut(s) 476, 582, 609, 748, 828
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 3 cut(s) 89, 315, 420
Cac8I GCNNGC 2 cut(s) 45, 256
CaiI CAGNNNCTG 1 cut(s) 344
CciI TCATGA 3 cut(s) 511, 550, 556
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 3 cut(s) 475, 581, 746
CseI GACGC 1 cut(s) 942
DdeI CTNAG 3 cut(s) 15, 273, 384
DpnI GATC 6 cut(s) 69, 426, 450, 495, 516, 555
DpnII GATC 6 cut(s) 67, 424, 448, 493, 514, 553
EaeI YGGCCR 2 cut(s) 607, 826
Eco130I CCWWGG 1 cut(s) 604
Eco88I CYCGRG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 132, 149
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 2 cut(s) 314, 459
ErhI CCWWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 960
FbaI TGATCA 4 cut(s) 448, 493, 514, 553
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 41, 207, 537
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 3 cut(s) 41, 207, 537
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 41, 207, 537
HaeIII GGCC 5 cut(s) 476, 582, 609, 748, 828
HapII CCGG 1 cut(s) 540
HgaI GACGC 1 cut(s) 942
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 2 cut(s) 544, 622
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 2 cut(s) 637, 876
HindII GTYRAC 2 cut(s) 637, 876
HinfI GANTC 3 cut(s) 248, 530, 898
HpaI GTTAAC 2 cut(s) 637, 876
HpaII CCGG 1 cut(s) 540
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 4 cut(s) 365, 637, 876, 886
Hpy188I TCNGA 5 cut(s) 18, 169, 274, 453, 897
Hpy8I GTNNAC 4 cut(s) 365, 637, 876, 886
HpyAV CCTTC 1 cut(s) 848
HpyCH4III ACNGT 4 cut(s) 140, 362, 848, 942
HpyCH4IV ACGT 2 cut(s) 544, 622
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 53, 463, 804
HpyF3I CTNAG 3 cut(s) 15, 273, 384
HpySE526I ACGT 2 cut(s) 544, 622
Hsp92I GRCGYC 2 cut(s) 544, 622
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 4 cut(s) 448, 493, 514, 553
KspAI GTTAAC 2 cut(s) 637, 876
Kzo9I GATC 6 cut(s) 67, 424, 448, 493, 514, 553
Lsp1109I GCAGC 3 cut(s) 52, 193, 523
LweI GCATC 5 cut(s) 173, 232, 321, 444, 955
MaeII ACGT 2 cut(s) 544, 622
MaeIII GTNAC 2 cut(s) 527, 842
MalI GATC 6 cut(s) 69, 426, 450, 495, 516, 555
MboI GATC 6 cut(s) 67, 424, 448, 493, 514, 553
MboII GAAGA 6 cut(s) 203, 368, 369, 572, 575, 721
MlsI TGGCCA 2 cut(s) 609, 828
MluNI TGGCCA 2 cut(s) 609, 828
MlyI GAGTC 2 cut(s) 524, 892
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 5 cut(s) 81, 256, 268, 334, 977
Mox20I TGGCCA 2 cut(s) 609, 828
Mph1103I ATGCAT 2 cut(s) 314, 459
MscI TGGCCA 2 cut(s) 609, 828
MseI TTAA 8 cut(s) 522, 588, 636, 644, 660, 671, 708, 875
MslI CAYNNNNRTG 2 cut(s) 437, 555
Msp20I TGGCCA 2 cut(s) 609, 828
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 2 cut(s) 134, 151
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 2 cut(s) 134, 151
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 20, 53, 463, 804
NdeII GATC 6 cut(s) 67, 424, 448, 493, 514, 553
NmuCI GTSAC 2 cut(s) 527, 842
NsiI ATGCAT 2 cut(s) 314, 459
NspI RCATGY 1 cut(s) 47
NspV TTCGAA 1 cut(s) 1014
PaeI GCATGC 1 cut(s) 47
PaeR7I CTCGAG 1 cut(s) 48
PagI TCATGA 3 cut(s) 511, 550, 556
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 3 cut(s) 42, 208, 538
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 2 cut(s) 524, 892
PpsI GAGTC 2 cut(s) 524, 892
PshBI ATTAAT 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 132, 149
PspGI CCWGG 2 cut(s) 132, 149
PspPI GGNCC 3 cut(s) 475, 581, 746
PstNI CAGNNNCTG 1 cut(s) 344
PvuI CGATCG 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 437, 555
SaqAI TTAA 8 cut(s) 522, 588, 636, 644, 660, 671, 708, 875
SatI GCNGC 3 cut(s) 41, 207, 537
Sau3AI GATC 6 cut(s) 67, 424, 448, 493, 514, 553
Sau96I GGNCC 3 cut(s) 475, 581, 746
SchI GAGTC 2 cut(s) 524, 892
ScrFI CCNGG 2 cut(s) 134, 151
SfaNI GCATC 5 cut(s) 173, 232, 321, 444, 955
Sfr274I CTCGAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 1014
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 2 cut(s) 437, 555
SmlI CTYRAG 2 cut(s) 48, 210
SmoI CTYRAG 2 cut(s) 48, 210
SphI GCATGC 1 cut(s) 47
SsiI CCGC 1 cut(s) 753
SspI AATATT 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 132, 149
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 4 cut(s) 140, 362, 848, 942
TaiI ACGT 2 cut(s) 547, 625
TaqI TCGA 3 cut(s) 49, 70, 1014
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 8 cut(s) 522, 588, 636, 644, 660, 671, 708, 875
Tru9I TTAA 8 cut(s) 522, 588, 636, 644, 660, 671, 708, 875
TscAI CASTG 3 cut(s) 89, 322, 427
TseFI GTSAC 2 cut(s) 527, 842
TseI GCWGC 3 cut(s) 40, 206, 536
Tsp45I GTSAC 2 cut(s) 527, 842
TspDTI ATGAA 6 cut(s) 17, 187, 473, 500, 573, 721
TspRI CASTG 3 cut(s) 89, 322, 427
Van91I CCANNNNNTGG 1 cut(s) 698
VspI ATTAAT 1 cut(s) 708
XapI RAATTY 4 cut(s) 725, 851, 904, 920
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XhoI CTCGAG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 364
ZraI GACGTC 2 cut(s) 545, 623
Zsp2I ATGCAT 2 cut(s) 314, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.