Rmu_ssc0000421.1_g000062

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000421.1
Physical Location & Seq
Forward (+)
242156 .. 243403
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000421.1_g000062.1.cds

Sequence Viewer

Length: 1158 bp
atggtcaattttgccaccactggcgatactaccattaatgatgagtttatgcctattcccatcccagaggcggcaagcattgaggaacagctcgcgatcatcatggccaacatcgagaggcataaagaaaagcgagccagggacatggccagtttgatcgcaaaaacagagcagaggtttcgctattgggaccaacaaattgagcaaaacgctcgagaagctagagaacaattccataagcctttcttgagcagcgacaaacagaccactcaacatgcctcgaacatcacatctgagttcacgaccttaagcgaggaaggttccagcttggctaattcgcatcaaggcgaattcgaatgtcaaaaacctgcacgcaaagaggttatttctaagactgacttgcctataggtggcaatcaacctaatggcctcactgctgatttctccactgatcaagccaaatatgtggctactgatcagatgcttggggggcaagatgtagcccacgttcatactggtgatcaccaaaagcaagttcttaaggattctaatagccaagcagtgattaaatatggtctaggcgaccaaatcgtcgtttaccaggaagaaaagcctctagaagttcatgatcaattcaattgtgactctactactggacgtcatcatgaccatacaaagggtcaagggcagggcccaccttactatcatcaatttagccttggccatgctggacatcatggtggagttaaccaattaagccatggccaacttaattatcaattaagttgtggtcttggaaagccaatctgtggctttattaatcaattcaatttcaaattcttcatcaatgtttcagggccaagcggtggctttgatatacatggaggatacatttgcaacccaccttgcaagaatggccaaaaaaattattttagtggccaatttgtccttcgtgactgtaaatttgagtatcatcaatacaagttaactcttgtttacaattatccagcaagtgaagctcttgatgtggaaaattcagaccagcaagtggtcaaatgcaaaagccaattcgtggcttattcgaaagacaacatgttctatgatatggtagttggtaacaaagccgatctatactcatcttcatctcctcaattgtaa

Protein Analysis

385

Amino Acids

43.14

Weight (kDa)

5.89

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
AatII GACGTC 1 cut(s) 661
Acc36I ACCTGC 1 cut(s) 376
AccB7I CCANNNNNTGG 4 cut(s) 809, 866, 1048, 1072
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 71, 864
AcoI YGGCCR 6 cut(s) 105, 147, 721, 763, 916, 937
AcsI RAATTY 4 cut(s) 350, 836, 962, 1033
AcyI GRCGYC 1 cut(s) 658
AfiI CCNNNNNNNGG 7 cut(s) 70, 410, 676, 809, 866, 1048, 1072
AflII CTTAAG 2 cut(s) 307, 539
AflIII ACRYGT 1 cut(s) 1092
AgsI TTSAA 3 cut(s) 637, 829, 835
AjnI CCWGG 2 cut(s) 137, 600
AjuI GAANNNNNNNTTGG 4 cut(s) 519, 551, 933, 965
AluBI AGCT 4 cut(s) 91, 221, 327, 1019
AluI AGCT 4 cut(s) 91, 221, 327, 1019
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 9 cut(s) 105, 147, 427, 691, 721, 763, 857, 916, 937
ApaI GGGCCC 1 cut(s) 695
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 4 cut(s) 350, 836, 962, 1033
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AseI ATTAAT 2 cut(s) 36, 819
AspS9I GGNCC 4 cut(s) 190, 691, 692, 857
AsuHPI GGTGA 2 cut(s) 515, 530
AsuII TTCGAA 2 cut(s) 354, 1082
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 695
BalI TGGCCA 6 cut(s) 107, 149, 723, 765, 918, 939
BanII GRGCYC 1 cut(s) 695
BbvI GCAGC 1 cut(s) 264
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 4 cut(s) 161, 194, 195, 228
BciT130I CCWGG 2 cut(s) 139, 602
BciVI GTATCC 1 cut(s) 881
BclI TGATCA 4 cut(s) 451, 475, 520, 628
BfaI CTAG 3 cut(s) 222, 578, 617
BfmI CTRYAG 1 cut(s) 405
BfrI CTTAAG 2 cut(s) 307, 539
BfuAI ACCTGC 1 cut(s) 376
BfuI GTATCC 1 cut(s) 881
BisI GCNGC 2 cut(s) 72, 253
BlsI GCNGC 2 cut(s) 73, 254
Bme1390I CCNGG 2 cut(s) 139, 602
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 4 cut(s) 190, 691, 692, 857
BmiI GGNNCC 3 cut(s) 191, 322, 693
BmrFI CCNGG 2 cut(s) 139, 602
BmsI GCATC 2 cut(s) 349, 471
Bpu14I TTCGAA 2 cut(s) 354, 1082
BpuEI CTTGAG 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 658
BsaJI CCNNGG 3 cut(s) 138, 718, 760
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 410, 676, 809, 866, 1048, 1072
Bse1I ACTGG 4 cut(s) 25, 150, 520, 658
BseBI CCWGG 2 cut(s) 139, 602
BseDI CCNNGG 3 cut(s) 138, 718, 760
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 7 cut(s) 70, 410, 676, 809, 866, 1048, 1072
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 4 cut(s) 25, 150, 520, 658
BseRI GAGGAG 1 cut(s) 1137
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 9 cut(s) 107, 149, 429, 693, 723, 765, 859, 918, 939
BsiHKCI CYCGRG 1 cut(s) 213
BslFI GGGAC 2 cut(s) 155, 203
BslI CCNNNNNNNGG 7 cut(s) 70, 410, 676, 809, 866, 1048, 1072
BsmFI GGGAC 2 cut(s) 155, 203
BsnI GGCC 9 cut(s) 107, 149, 429, 693, 723, 765, 859, 918, 939
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 2 cut(s) 354, 1082
Bsp120I GGGCCC 1 cut(s) 691
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
Bsp19I CCATGG 1 cut(s) 760
Bsp68I TCGCGA 1 cut(s) 95
BspACI CCGC 2 cut(s) 71, 864
BspANI GGCC 9 cut(s) 107, 149, 429, 693, 723, 765, 859, 918, 939
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 2 cut(s) 625, 664
BspLI GGNNCC 3 cut(s) 191, 322, 693
BspMI ACCTGC 1 cut(s) 376
BspT104I TTCGAA 2 cut(s) 354, 1082
BspTI CTTAAG 2 cut(s) 307, 539
BsrI ACTGG 4 cut(s) 25, 150, 520, 658
BssECI CCNNGG 3 cut(s) 138, 718, 760
BssMI GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
BssNI GRCGYC 1 cut(s) 658
BssT1I CCWWGG 2 cut(s) 718, 760
Bst2UI CCWGG 2 cut(s) 139, 602
Bst4CI ACNGT 1 cut(s) 959
BstACI GRCGYC 1 cut(s) 658
BstAFI CTTAAG 2 cut(s) 307, 539
BstBI TTCGAA 2 cut(s) 354, 1082
BstC8I GCNNGC 4 cut(s) 76, 93, 135, 373
BstDEI CTNAG 2 cut(s) 294, 390
BstDSI CCRYGG 1 cut(s) 760
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 7 cut(s) 99, 159, 454, 478, 523, 631, 1129
BstMBI GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
BstMWI GCNNNNNNNGC 4 cut(s) 218, 490, 915, 1016
BstNI CCWGG 2 cut(s) 139, 602
BstNSI RCATGY 2 cut(s) 278, 1096
BstSCI CCNGG 2 cut(s) 137, 600
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 695
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 264
BstXI CCANNNNNNTGG 2 cut(s) 145, 466
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 9 cut(s) 107, 149, 429, 693, 723, 765, 859, 918, 939
BtgI CCRYGG 1 cut(s) 760
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 2 cut(s) 432, 567
BtsIMutI CAGTG 4 cut(s) 18, 432, 447, 567
BtuMI TCGCGA 1 cut(s) 95
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 4 cut(s) 76, 93, 135, 373
CciI TCATGA 2 cut(s) 625, 664
Cfr13I GGNCC 4 cut(s) 190, 691, 692, 857
DdeI CTNAG 2 cut(s) 294, 390
DpnI GATC 7 cut(s) 98, 158, 453, 477, 522, 630, 1128
DpnII GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 6 cut(s) 105, 147, 721, 763, 916, 937
Eco130I CCWWGG 2 cut(s) 718, 760
Eco24I GRGCYC 1 cut(s) 695
Eco47I GGWCC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 691
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 137, 600
EcoT14I CCWWGG 2 cut(s) 718, 760
EcoT38I GRGCYC 1 cut(s) 695
ErhI CCWWGG 2 cut(s) 718, 760
FalI AAGNNNNNCTT 4 cut(s) 230, 262, 383, 415
FaqI GGGAC 2 cut(s) 155, 203
FbaI TGATCA 4 cut(s) 451, 475, 520, 628
Fnu4HI GCNGC 2 cut(s) 72, 253
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 695
Fsp4HI GCNGC 2 cut(s) 72, 253
FspBI CTAG 3 cut(s) 222, 578, 617
GluI GCNGC 2 cut(s) 72, 253
HaeIII GGCC 9 cut(s) 107, 149, 429, 693, 723, 765, 859, 918, 939
Hin1I GRCGYC 1 cut(s) 658
HincII GTYRAC 2 cut(s) 748, 987
HindII GTYRAC 2 cut(s) 748, 987
HinfI GANTC 2 cut(s) 545, 644
HpaI GTTAAC 2 cut(s) 748, 987
HphI GGTGA 2 cut(s) 515, 530
Hpy166II GTNNAC 5 cut(s) 300, 598, 748, 987, 997
Hpy188I TCNGA 3 cut(s) 295, 480, 1039
Hpy8I GTNNAC 5 cut(s) 300, 598, 748, 987, 997
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 2 cut(s) 311, 959
HpyCH4III ACNGT 1 cut(s) 959
HpyCH4IV ACGT 2 cut(s) 507, 658
HpyCH4V TGCA 4 cut(s) 371, 897, 909, 1059
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 490, 915, 1016
HpyF3I CTNAG 2 cut(s) 294, 390
HpySE526I ACGT 2 cut(s) 507, 658
Hsp92I GRCGYC 1 cut(s) 658
Ksp22I TGATCA 4 cut(s) 451, 475, 520, 628
KspAI GTTAAC 2 cut(s) 748, 987
Kzo9I GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 2 cut(s) 349, 471
MaeI CTAG 3 cut(s) 222, 578, 617
MaeII ACGT 2 cut(s) 507, 658
MaeIII GTNAC 3 cut(s) 641, 953, 1115
MalI GATC 7 cut(s) 98, 158, 453, 477, 522, 630, 1128
MboI GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
MboII GAAGA 3 cut(s) 617, 832, 1131
MfeI CAATTG 2 cut(s) 637, 1151
MhlI GDGCHC 1 cut(s) 695
MlsI TGGCCA 6 cut(s) 107, 149, 723, 765, 918, 939
MluNI TGGCCA 6 cut(s) 107, 149, 723, 765, 918, 939
MlyI GAGTC 1 cut(s) 638
Mox20I TGGCCA 6 cut(s) 107, 149, 723, 765, 918, 939
MscI TGGCCA 6 cut(s) 107, 149, 723, 765, 918, 939
MslI CAYNNNNRTG 2 cut(s) 516, 738
Msp20I TGGCCA 6 cut(s) 107, 149, 723, 765, 918, 939
MspCI CTTAAG 2 cut(s) 307, 539
MspR9I CCNGG 2 cut(s) 139, 602
MunI CAATTG 2 cut(s) 637, 1151
MvaI CCWGG 2 cut(s) 139, 602
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 218, 490, 915, 1016
NcoI CCATGG 1 cut(s) 760
NdeII GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
NlaIV GGNNCC 3 cut(s) 191, 322, 693
NmuCI GTSAC 2 cut(s) 641, 953
NruI TCGCGA 1 cut(s) 95
NspI RCATGY 2 cut(s) 278, 1096
NspV TTCGAA 2 cut(s) 354, 1082
PaeR7I CTCGAG 1 cut(s) 213
PagI TCATGA 2 cut(s) 625, 664
PciI ACATGT 1 cut(s) 1092
PfeI GAWTC 1 cut(s) 545
PflMI CCANNNNNTGG 4 cut(s) 809, 866, 1048, 1072
PkrI GCNGC 2 cut(s) 73, 254
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
PscI ACATGT 1 cut(s) 1092
PshBI ATTAAT 2 cut(s) 36, 819
Psp6I CCWGG 2 cut(s) 137, 600
PspGI CCWGG 2 cut(s) 137, 600
PspN4I GGNNCC 3 cut(s) 191, 322, 693
PspOMI GGGCCC 1 cut(s) 691
PspPI GGNCC 4 cut(s) 190, 691, 692, 857
PsrI GAACNNNNNNTAC 2 cut(s) 492, 524
RruI TCGCGA 1 cut(s) 95
RseI CAYNNNNRTG 2 cut(s) 516, 738
SatI GCNGC 2 cut(s) 72, 253
Sau3AI GATC 7 cut(s) 96, 156, 451, 475, 520, 628, 1126
Sau96I GGNCC 4 cut(s) 190, 691, 692, 857
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 2 cut(s) 139, 602
SduI GDGCHC 1 cut(s) 695
SfaNI GCATC 2 cut(s) 349, 471
SfcI CTRYAG 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 213
SfuI TTCGAA 2 cut(s) 354, 1082
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 516, 738
SmlI CTYRAG 4 cut(s) 213, 247, 307, 539
SmoI CTYRAG 4 cut(s) 213, 247, 307, 539
SsiI CCGC 2 cut(s) 71, 864
SspMI CTAG 3 cut(s) 222, 578, 617
StyD4I CCNGG 2 cut(s) 137, 600
StyI CCWWGG 2 cut(s) 718, 760
TaaI ACNGT 1 cut(s) 959
TaiI ACGT 2 cut(s) 510, 661
TaqI TCGA 5 cut(s) 114, 214, 281, 354, 1082
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 545
TscAI CASTG 4 cut(s) 25, 439, 454, 567
TseFI GTSAC 2 cut(s) 641, 953
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 2 cut(s) 641, 953
TspDTI ATGAA 4 cut(s) 500, 614, 832, 1131
TspRI CASTG 4 cut(s) 25, 439, 454, 567
Van91I CCANNNNNTGG 4 cut(s) 809, 866, 1048, 1072
Vha464I CTTAAG 2 cut(s) 307, 539
VpaK11BI GGWCC 1 cut(s) 190
VspI ATTAAT 2 cut(s) 36, 819
XapI RAATTY 4 cut(s) 350, 836, 962, 1033
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 2 cut(s) 278, 1096
XcmI CCANNNNNNNNNTGG 2 cut(s) 512, 758
XhoI CTCGAG 1 cut(s) 213
XspI CTAG 3 cut(s) 222, 578, 617
ZraI GACGTC 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.