Rmu_sc0008698.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008698.1
OG0000314
Physical Location & Seq
Reverse (-)
8375 .. 9103
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008698.1_g000004.1.cds

Sequence Viewer

Length: 729 bp
atggacaatgttgccaccattggcgatatcgccattaatgatgagtttatgcctattcccatcccagagggggcaagcattgatgaacagctcgcgatcatcatggccaacatcgagaggaataaagaaaagcaagccagggacatggccattttgatcgaaaaaacaaagcagaggtttcgcgattgggacctagaaattgagcagaacgctctagaagaggtcatttatgaggctgatttgcctataggtggcaatcaacctaatggcctcactggtgaatcgcagccttacatagaggctacttatggagaacgtcgtcaacaagattgttcttcagataagaaaattgtctctgaacaaatatctgatgtctccactgatcaagccaaatatgtggctactgatcagatgcatggggggcaagatatgacccatgatcatccctttgatcaagagaagttggcgacagttggcgacaaagccgatcttgggacaccgtcatcttccaaattacaattggagatcatgtctcgtcaaccaacaaagatacttggggggcaagaatacccctctcacgagccaaattcctccaaattcttcaacgagaagtatctttgttctttttctacaagctctcacaggagggatttttaccctacaaattttgatacatcggagcttggaatgaagcatagatggcctcccccgtggtcttctagaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.36

Weight (kDa)

4.75

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 95, 183
AcoI YGGCCR 2 cut(s) 105, 147
AcsI RAATTY 3 cut(s) 586, 596, 664
AcuI CTGAAG 1 cut(s) 321
AfiI CCNNNNNNNGG 3 cut(s) 70, 251, 492
AgsI TTSAA 1 cut(s) 604
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 3 cut(s) 91, 636, 682
AluI AGCT 3 cut(s) 91, 636, 682
Alw26I GTCTC 3 cut(s) 358, 379, 537
AoxI GGCC 4 cut(s) 105, 147, 268, 701
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 3 cut(s) 586, 596, 664
AseI ATTAAT 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 190
BalI TGGCCA 2 cut(s) 107, 149
BauI CACGAG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 68, 693
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 139
BclI TGATCA 4 cut(s) 382, 406, 439, 451
BcoDI GTCTC 3 cut(s) 358, 379, 537
BfaI CTAG 3 cut(s) 194, 215, 720
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 708
BsaJI CCNNGG 2 cut(s) 138, 710
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 251, 492
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 138, 710
BseGI GGATG 2 cut(s) 60, 442
BseLI CCNNNNNNNGG 3 cut(s) 70, 251, 492
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 2 cut(s) 95, 183
BshFI GGCC 4 cut(s) 107, 149, 270, 703
BslFI GGGAC 3 cut(s) 155, 203, 508
BslI CCNNNNNNNGG 3 cut(s) 70, 251, 492
BsmAI GTCTC 3 cut(s) 358, 379, 537
BsmFI GGGAC 3 cut(s) 155, 203, 508
BsnI GGCC 4 cut(s) 107, 149, 270, 703
Bsp143I GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
Bsp68I TCGCGA 2 cut(s) 95, 183
BspANI GGCC 4 cut(s) 107, 149, 270, 703
BspFNI CGCG 2 cut(s) 95, 183
BspLI GGNNCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 138, 710
BssMI GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
BssSI CACGAG 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 472, 501
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 76, 93, 135
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 2 cut(s) 60, 442
BstFNI CGCG 2 cut(s) 95, 183
BstKTI GATC 8 cut(s) 99, 159, 385, 409, 442, 454, 490, 528
BstMAI GTCTC 3 cut(s) 358, 379, 537
BstMBI GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
BstMWI GCNNNNNNNGC 2 cut(s) 421, 700
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 2 cut(s) 95, 183
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 708
BstXI CCANNNNNNTGG 2 cut(s) 145, 397
BsuRI GGCC 4 cut(s) 107, 149, 270, 703
BtgI CCRYGG 1 cut(s) 710
BtsCI GGATG 2 cut(s) 60, 442
BtsIMutI CAGTG 2 cut(s) 273, 378
BtuMI TCGCGA 2 cut(s) 95, 183
Cac8I GCNNGC 3 cut(s) 76, 93, 135
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 5 cut(s) 103, 145, 416, 437, 529
DpnI GATC 8 cut(s) 98, 158, 384, 408, 441, 453, 489, 527
DpnII GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
EaeI YGGCCR 2 cut(s) 105, 147
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 137
EcoRV GATATC 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 417
FaeI CATG 5 cut(s) 106, 148, 419, 440, 532
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 3 cut(s) 155, 203, 508
FatI CATG 5 cut(s) 102, 144, 415, 436, 528
FbaI TGATCA 4 cut(s) 382, 406, 439, 451
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 2 cut(s) 47, 429
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 3 cut(s) 194, 215, 720
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 4 cut(s) 107, 149, 270, 703
Hin1II CATG 5 cut(s) 106, 148, 419, 440, 532
HincII GTYRAC 2 cut(s) 323, 539
HindII GTYRAC 2 cut(s) 323, 539
HinfI GANTC 1 cut(s) 281
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 323, 539
Hpy188I TCNGA 5 cut(s) 340, 358, 370, 411, 679
Hpy188III TCNNGA 7 cut(s) 94, 115, 182, 215, 455, 578, 720
Hpy8I GTNNAC 2 cut(s) 323, 539
Hpy99I CGWCG 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 472, 501
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 700
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 5 cut(s) 106, 148, 419, 440, 532
Ksp22I TGATCA 4 cut(s) 382, 406, 439, 451
Kzo9I GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
LmnI GCTCC 1 cut(s) 679
LpnPI CCDG 5 cut(s) 78, 124, 151, 261, 628
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 402
MaeI CTAG 3 cut(s) 194, 215, 720
MaeII ACGT 1 cut(s) 316
MalI GATC 8 cut(s) 98, 158, 384, 408, 441, 453, 489, 527
MboI GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
MboII GAAGA 5 cut(s) 230, 327, 498, 592, 708
MfeI CAATTG 1 cut(s) 518
MlsI TGGCCA 2 cut(s) 107, 149
MluCI AATT 7 cut(s) 198, 348, 512, 518, 586, 596, 664
MluNI TGGCCA 2 cut(s) 107, 149
Mox20I TGGCCA 2 cut(s) 107, 149
Mph1103I ATGCAT 1 cut(s) 417
MscI TGGCCA 2 cut(s) 107, 149
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 2 cut(s) 107, 149
MspR9I CCNGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 518
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 2 cut(s) 95, 183
MwoI GCNNNNNNNGC 2 cut(s) 421, 700
NdeII GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
NlaIII CATG 5 cut(s) 106, 148, 419, 440, 532
NlaIV GGNNCC 1 cut(s) 191
NruI TCGCGA 2 cut(s) 95, 183
NsiI ATGCAT 1 cut(s) 417
PfeI GAWTC 1 cut(s) 281
PflFI GACNNNGTC 1 cut(s) 499
PkrI GCNGC 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 499
RruI TCGCGA 2 cut(s) 95, 183
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 8 cut(s) 96, 156, 382, 406, 439, 451, 487, 525
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 139
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 190
Sse9I AATT 7 cut(s) 198, 348, 512, 518, 586, 596, 664
SspMI CTAG 3 cut(s) 194, 215, 720
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 472, 501
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 114, 159
TasI AATT 7 cut(s) 198, 348, 512, 518, 586, 596, 664
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 2 cut(s) 280, 385
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 99, 704
TspRI CASTG 2 cut(s) 280, 385
Tth111I GACNNNGTC 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 190
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 3 cut(s) 586, 596, 664
XbaI TCTAGA 2 cut(s) 214, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XspI CTAG 3 cut(s) 194, 215, 720
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.