Rroxscaffold_6G00428210

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
48691346 .. 48691885
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428210.1

Sequence Viewer

Length: 540 bp
ATGCACGGAAAGTGGACGAGAGGCAAACAAATACTTGATATGCCTATTTTTGAAGAAGAGATCGATTCAACAATTTTTGGTGATTCTAAATATGATCTCAACATGGAGCCAATATATGATGAATACGACGATAATTACGATTTAATTATTGGTTCCAAAAATCATATGCGGGAGTACAAGTCTTTTGAAGCTCTTGATATGGAGAACTTTAACCAACAAGTGGTTAAATGCAAAAGCCAATCTGTGGCTTCTTTTGAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGCCGATCTTAGGACACCGTCATCTCCAAAATTGCAATTGAAGATCATGCTTCGCCAACCAACAAAGATACTTGGGGGGCAATATTACTCCTTCTACGAGCCAAATTTCTTTCAAGTCTTCGACGCGAAGTATCTTTGTTACTTTCCTGCAAGCTCTCACAAGAGAGGTTTTCATGCTATAAATTTTGATGCATCGGAGCTTGGAGTGAAGCATAGATGGCCTCCCTCGTGGCCTTCTAGAGGTTAG

Protein Analysis

179

Amino Acids

21.01

Weight (kDa)

5.53

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 220, 244
AccII CGCG 1 cut(s) 419
AciI CCGC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 397, 475
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 4 cut(s) 220, 244, 303, 533
AgsI TTSAA 6 cut(s) 53, 69, 188, 257, 334, 407
AluBI AGCT 3 cut(s) 191, 447, 493
AluI AGCT 3 cut(s) 191, 447, 493
AoxI GGCC 2 cut(s) 512, 524
ApoI RAATTY 2 cut(s) 397, 475
AsuHPI GGTGA 1 cut(s) 92
BauI CACGAG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 264, 403
BccI CCATC 1 cut(s) 504
BfaI CTAG 1 cut(s) 531
BmiI GGNNCC 2 cut(s) 108, 154
BmsI GCATC 2 cut(s) 472, 494
BpiI GAAGAC 2 cut(s) 264, 403
Bsa29I ATCGAT 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 244, 303, 533
BseCI ATCGAT 1 cut(s) 63
BseLI CCNNNNNNNGG 4 cut(s) 220, 244, 303, 533
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 514, 526
BshVI ATCGAT 1 cut(s) 63
BslI CCNNNNNNNGG 4 cut(s) 220, 244, 303, 533
BsnI GGCC 2 cut(s) 514, 526
Bsp143I GATC 4 cut(s) 60, 94, 298, 336
BspACI CCGC 1 cut(s) 169
BspANI GGCC 2 cut(s) 514, 526
BspDI ATCGAT 1 cut(s) 63
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 2 cut(s) 108, 154
BssMI GATC 4 cut(s) 60, 94, 298, 336
BssSI CACGAG 1 cut(s) 520
Bst2BI CACGAG 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 302
BstENI CCTNNNNNAGG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 419
BstKTI GATC 4 cut(s) 63, 97, 301, 339
BstMBI GATC 4 cut(s) 60, 94, 298, 336
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstUI CGCG 1 cut(s) 419
BstV2I GAAGAC 2 cut(s) 264, 403
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 2 cut(s) 514, 526
BsuTUI ATCGAT 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 175
CviAII CATG 5 cut(s) 103, 265, 277, 340, 467
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 302
DpnI GATC 4 cut(s) 62, 96, 300, 338
DpnII GATC 4 cut(s) 60, 94, 298, 336
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoT22I ATGCAT 1 cut(s) 487
FaeI CATG 5 cut(s) 106, 268, 280, 343, 470
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 5 cut(s) 102, 264, 276, 339, 466
FauI CCCGC 1 cut(s) 162
FauNDI CATATG 1 cut(s) 165
FspBI CTAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 514, 526
HgaI GACGC 1 cut(s) 425
Hin1II CATG 5 cut(s) 106, 268, 280, 343, 470
HinfI GANTC 2 cut(s) 65, 83
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 2 cut(s) 194, 531
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 2 cut(s) 131, 419
HpyAV CCTTC 2 cut(s) 394, 537
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 5 cut(s) 4, 231, 328, 443, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 5 cut(s) 106, 268, 280, 343, 470
Kzo9I GATC 4 cut(s) 60, 94, 298, 336
LmnI GCTCC 2 cut(s) 106, 490
LpnPI CCDG 1 cut(s) 453
LweI GCATC 2 cut(s) 472, 494
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 431
MalI GATC 4 cut(s) 62, 96, 300, 338
MboI GATC 4 cut(s) 60, 94, 298, 336
MboII GAAGA 5 cut(s) 65, 68, 269, 346, 403
MfeI CAATTG 1 cut(s) 329
MluCI AATT 7 cut(s) 72, 133, 144, 323, 329, 397, 475
MnlI CCTC 5 cut(s) 14, 452, 525, 527, 529
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 3 cut(s) 143, 210, 225
MunI CAATTG 1 cut(s) 329
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 511
NdeI CATATG 1 cut(s) 165
NdeII GATC 4 cut(s) 60, 94, 298, 336
NlaIII CATG 5 cut(s) 106, 268, 280, 343, 470
NlaIV GGNNCC 2 cut(s) 108, 154
NsiI ATGCAT 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 2 cut(s) 65, 83
PflFI GACNNNGTC 1 cut(s) 310
PflMI CCANNNNNTGG 2 cut(s) 220, 244
PspN4I GGNNCC 2 cut(s) 108, 154
PsyI GACNNNGTC 1 cut(s) 310
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 143, 210, 225
Sau3AI GATC 4 cut(s) 60, 94, 298, 336
SetI ASST 5 cut(s) 193, 449, 463, 495, 538
SfaNI GCATC 2 cut(s) 472, 494
Sse9I AATT 7 cut(s) 72, 133, 144, 323, 329, 397, 475
SsiI CCGC 1 cut(s) 169
SspI AATATT 1 cut(s) 377
SspMI CTAG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 63, 414
TasI AATT 7 cut(s) 72, 133, 144, 323, 329, 397, 475
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 2 cut(s) 65, 83
Tru1I TTAA 3 cut(s) 143, 210, 225
Tru9I TTAA 3 cut(s) 143, 210, 225
TspDTI ATGAA 2 cut(s) 135, 455
TspGWI ACGGA 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 310
Van91I CCANNNNNTGG 2 cut(s) 220, 244
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 2 cut(s) 397, 475
XbaI TCTAGA 1 cut(s) 530
XspI CTAG 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.