Rroxscaffold_3G00248200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000314
Physical Location & Seq
Reverse (-)
41494818 .. 41499341
4524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248200.1

Sequence Viewer

Length: 735 bp
ATGGTGATTTGCTTGGTTGTCAAGACTGTGCAAGACGGGAAGGTAAATATGCAAGCTGCATATACGGCCGAGATTATGCGAGCCATGCAAGAAAGGCCTCTAGAAGATCGTCAAGAAAGATGTGCCCTTGCTACTAGACGCTACCATGATCAAGAAATTGATCATAATCATGGTCAAGAACATGACCCACTCAATTATCAATCAAGATATGACCATGCAGAGGATCAATTAAGGCATGGCCCACCTTATTATCATCAATTTAGCCTTGGCCATGCTACTGGACGTCATGGTGGAGTTAATCAATTAAGCCATGATCAACTTAATTATGAATTAAATTGTGGTCTAGAGAAGCCAATCTATGGCTTTATTAATCAATTCAACTTGAAGTTCTTCATATATGCTTCGGGACCAAGCGGTGGTTTTTATAAATGTGGGAGACACATCCGCAACCCACCTCGCAAGAACAGCCAAAACAATTATTCTAGTGGCCAGTTTGTCCTTCGCGACCCGCCCGCGAACGAGGCTTCTCACTTAGAAAGTATAAGCTGCTGCACACTCGCTGAAGCTTCTAAAGGTCGCGAAAGTTACCCATTCGCGACCACAAGCGTTCCCTCCCATTTGTTCACGGAGCAGCCAAAAGGCCCAAAGGCGCCTCCACCCCAGAGAGTTAGTTCGCGAGGGCAGCAGTCAGCGAATGTTCTCGAGGAACACTTCGCCAAAGCTTTTTCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.57

Weight (kDa)

7.72

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AatII GACGTC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 649
AccB7I CCANNNNNTGG 2 cut(s) 359, 416
AccII CGCG 5 cut(s) 504, 515, 579, 596, 676
AciI CCGC 4 cut(s) 414, 445, 509, 513
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 3 cut(s) 66, 268, 487
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 2 cut(s) 283, 650
AfiI CCNNNNNNNGG 3 cut(s) 220, 359, 416
AgsI TTSAA 2 cut(s) 379, 385
AluBI AGCT 4 cut(s) 56, 546, 566, 722
AluI AGCT 4 cut(s) 56, 546, 566, 722
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 6 cut(s) 66, 95, 238, 268, 487, 640
ApeKI GCWGC 5 cut(s) 56, 546, 549, 631, 682
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 3 cut(s) 239, 407, 641
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 701
AvaII GGWCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 127
BalI TGGCCA 2 cut(s) 270, 489
BanI GGYRCC 1 cut(s) 649
BbvI GCAGC 5 cut(s) 43, 533, 536, 643, 694
BceAI ACGGC 1 cut(s) 81
BclI TGATCA 3 cut(s) 148, 160, 313
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 5 cut(s) 101, 135, 344, 483, 733
BfoI RGCGCY 1 cut(s) 653
BisI GCNGC 5 cut(s) 57, 547, 550, 632, 683
BlsI GCNGC 5 cut(s) 58, 548, 551, 633, 684
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 701
BmgT120I GGNCC 3 cut(s) 239, 407, 641
BmiI GGNNCC 2 cut(s) 408, 651
BsaBI GATNNNNATC 1 cut(s) 165
BsaHI GRCGYC 2 cut(s) 283, 650
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 359, 416
Bse1I ACTGG 2 cut(s) 283, 490
Bse8I GATNNNNATC 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 441
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 220, 359, 416
BseNI ACTGG 2 cut(s) 283, 490
BseSI GKGCMC 1 cut(s) 127
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 5 cut(s) 43, 533, 536, 643, 694
BsgI GTGCAG 1 cut(s) 535
Bsh1236I CGCG 5 cut(s) 504, 515, 579, 596, 676
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 6 cut(s) 68, 97, 240, 270, 489, 642
BshNI GGYRCC 1 cut(s) 649
BsiEI CGRYCG 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 701
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 3 cut(s) 220, 359, 416
BsmAI GTCTC 1 cut(s) 430
BsmFI GGGAC 1 cut(s) 420
BsnI GGCC 6 cut(s) 68, 97, 240, 270, 489, 642
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 5 cut(s) 106, 148, 160, 223, 313
Bsp68I TCGCGA 4 cut(s) 504, 579, 596, 676
BspACI CCGC 4 cut(s) 414, 445, 509, 513
BspANI GGCC 6 cut(s) 68, 97, 240, 270, 489, 642
BspFNI CGCG 5 cut(s) 504, 515, 579, 596, 676
BspLI GGNNCC 2 cut(s) 408, 651
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 649
BsrI ACTGG 2 cut(s) 283, 490
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 5 cut(s) 106, 148, 160, 223, 313
BssNI GRCGYC 2 cut(s) 283, 650
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 28
BstACI GRCGYC 2 cut(s) 283, 650
BstC8I GCNNGC 3 cut(s) 54, 81, 513
BstDEI CTNAG 1 cut(s) 532
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 5 cut(s) 504, 515, 579, 596, 676
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 5 cut(s) 109, 151, 163, 226, 316
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 5 cut(s) 106, 148, 160, 223, 313
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 65, 85, 94, 465, 521, 682
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 5 cut(s) 504, 515, 579, 596, 676
BstV1I GCAGC 5 cut(s) 43, 533, 536, 643, 694
BstXI CCANNNNNNTGG 1 cut(s) 278
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 6 cut(s) 68, 97, 240, 270, 489, 642
BtsCI GGATG 1 cut(s) 441
BtuMI TCGCGA 4 cut(s) 504, 579, 596, 676
Cac8I GCNNGC 3 cut(s) 54, 81, 513
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 3 cut(s) 239, 407, 641
CseI GACGC 1 cut(s) 147
CviAII CATG 9 cut(s) 85, 146, 170, 182, 215, 236, 272, 287, 311
DdeI CTNAG 1 cut(s) 532
DinI GGCGCC 1 cut(s) 651
DpnI GATC 5 cut(s) 108, 150, 162, 225, 315
DpnII GATC 5 cut(s) 106, 148, 160, 223, 313
EaeI YGGCCR 3 cut(s) 66, 268, 487
EagI CGGCCG 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 407
Eco52I CGGCCG 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 701
EcoT14I CCWWGG 1 cut(s) 265
EgeI GGCGCC 1 cut(s) 651
EheI GGCGCC 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 9 cut(s) 88, 149, 173, 185, 218, 239, 275, 290, 314
FaqI GGGAC 1 cut(s) 420
FatI CATG 9 cut(s) 84, 145, 169, 181, 214, 235, 271, 286, 310
FauI CCCGC 2 cut(s) 516, 520
FbaI TGATCA 3 cut(s) 148, 160, 313
Fnu4HI GCNGC 5 cut(s) 57, 547, 550, 632, 683
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 5 cut(s) 57, 547, 550, 632, 683
FspBI CTAG 5 cut(s) 101, 135, 344, 483, 733
GlaI GCGC 1 cut(s) 651
GluI GCNGC 5 cut(s) 57, 547, 550, 632, 683
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 6 cut(s) 68, 97, 240, 270, 489, 642
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 652
Hin1I GRCGYC 2 cut(s) 283, 650
Hin1II CATG 9 cut(s) 88, 149, 173, 185, 218, 239, 275, 290, 314
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HindIII AAGCTT 2 cut(s) 564, 720
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 624
Hpy8I GTNNAC 1 cut(s) 624
HpyAV CCTTC 2 cut(s) 34, 509
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 6 cut(s) 31, 52, 59, 88, 218, 552
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 85, 94, 465, 521, 682
HpyF3I CTNAG 1 cut(s) 532
HpySE526I ACGT 1 cut(s) 283
Hsp92I GRCGYC 2 cut(s) 283, 650
Hsp92II CATG 9 cut(s) 88, 149, 173, 185, 218, 239, 275, 290, 314
HspAI GCGC 1 cut(s) 650
KasI GGCGCC 1 cut(s) 649
Ksp22I TGATCA 3 cut(s) 148, 160, 313
Kzo9I GATC 5 cut(s) 106, 148, 160, 223, 313
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 4 cut(s) 264, 503, 674, 714
Lsp1109I GCAGC 5 cut(s) 43, 533, 536, 643, 694
MaeI CTAG 5 cut(s) 101, 135, 344, 483, 733
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 584
MalI GATC 5 cut(s) 108, 150, 162, 225, 315
MboI GATC 5 cut(s) 106, 148, 160, 223, 313
MboII GAAGA 2 cut(s) 116, 382
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 2 cut(s) 270, 489
MluNI TGGCCA 2 cut(s) 270, 489
Mly113I GGCGCC 1 cut(s) 650
MnlI CCTC 8 cut(s) 108, 214, 465, 514, 622, 663, 671, 697
Mox20I TGGCCA 2 cut(s) 270, 489
MroXI GAANNNNTTC 1 cut(s) 389
MscI TGGCCA 2 cut(s) 270, 489
MseI TTAA 6 cut(s) 230, 297, 305, 321, 332, 369
MslI CAYNNNNRTG 1 cut(s) 168
Msp20I TGGCCA 2 cut(s) 270, 489
MvnI CGCG 5 cut(s) 504, 515, 579, 596, 676
MwoI GCNNNNNNNGC 6 cut(s) 65, 85, 94, 465, 521, 682
NarI GGCGCC 1 cut(s) 650
NdeII GATC 5 cut(s) 106, 148, 160, 223, 313
NlaIII CATG 9 cut(s) 88, 149, 173, 185, 218, 239, 275, 290, 314
NlaIV GGNNCC 2 cut(s) 408, 651
NmeAIII GCCGAG 1 cut(s) 94
NruI TCGCGA 4 cut(s) 504, 579, 596, 676
PaeR7I CTCGAG 1 cut(s) 701
PceI AGGCCT 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 389
PflMI CCANNNNNTGG 2 cut(s) 359, 416
PkrI GCNGC 5 cut(s) 58, 548, 551, 633, 684
PluTI GGCGCC 1 cut(s) 653
PshBI ATTAAT 1 cut(s) 369
PsiI TTATAA 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 408, 651
PspPI GGNCC 3 cut(s) 239, 407, 641
RruI TCGCGA 4 cut(s) 504, 579, 596, 676
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 6 cut(s) 230, 297, 305, 321, 332, 369
SatI GCNGC 5 cut(s) 57, 547, 550, 632, 683
Sau3AI GATC 5 cut(s) 106, 148, 160, 223, 313
Sau96I GGNCC 3 cut(s) 239, 407, 641
SduI GDGCHC 1 cut(s) 127
SetI ASST 9 cut(s) 45, 58, 247, 286, 457, 548, 568, 577, 724
SfoI GGCGCC 1 cut(s) 651
Sfr274I CTCGAG 1 cut(s) 701
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 701
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 4 cut(s) 414, 445, 509, 513
SspDI GGCGCC 1 cut(s) 649
SspMI CTAG 5 cut(s) 101, 135, 344, 483, 733
StuI AGGCCT 1 cut(s) 97
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 702
Tru1I TTAA 6 cut(s) 230, 297, 305, 321, 332, 369
Tru9I TTAA 6 cut(s) 230, 297, 305, 321, 332, 369
TseI GCWGC 5 cut(s) 56, 546, 549, 631, 682
TspDTI ATGAA 2 cut(s) 342, 382
TspGWI ACGGA 1 cut(s) 641
Van91I CCANNNNNTGG 2 cut(s) 359, 416
VpaK11BI GGWCC 1 cut(s) 407
VspI ATTAAT 1 cut(s) 369
XbaI TCTAGA 2 cut(s) 100, 343
XhoI CTCGAG 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 5 cut(s) 101, 135, 344, 483, 733
ZraI GACGTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.