Rmu_co8230721.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8230721.1
OG0000314
Physical Location & Seq
Forward (+)
261 .. 756
496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8230721.1_g000001.1.cds

Sequence Viewer

Length: 496 bp
atggccaatgttgtcaccaatgacgacactacgacagaagaggcttttgtttcgaagcctatcccggaaggagcgaccattgaggaaacactcgcgatccttatggagaatgtcgagaatcatctcaagaagatgaaagctgagcttgctagggaaaccgcgaaggcgaatcgactcacacgcgaaatggaagagaatgctcagaaagctaaagagcaaagggagcggcgcgatcgagaagctgaacaacgcaatggagagcttaccaagcggaggaaacaggaagaccaagagtgggcaagacaatatcagcatatcctggatcgtatagcgacctcgcgcaagggagattccagcttgactactcaagtcggttcacagcaaggcgaattggaaagccaaaaatcttcgcgcaaagaggttgtttctgaggttgaattgcctacagatggaaataaacctaaatgcctcattgatgagtcacggccttacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.95

Weight (kDa)

5.47

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 226
AccII CGCG 6 cut(s) 95, 161, 183, 231, 340, 412
AciI CCGC 3 cut(s) 159, 226, 271
AclWI GGATC 2 cut(s) 91, 330
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 3 cut(s) 273, 295, 449
AgsI TTSAA 1 cut(s) 437
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 6 cut(s) 140, 145, 209, 242, 262, 357
AluI AGCT 6 cut(s) 140, 145, 209, 242, 262, 357
AlwI GGATC 2 cut(s) 91, 330
AoxI GGCC 2 cut(s) 3, 485
AspLEI GCGC 3 cut(s) 231, 342, 414
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 7
AsuII TTCGAA 1 cut(s) 53
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 1 cut(s) 443
BciT130I CCWGG 1 cut(s) 320
BcnI CCSGG 1 cut(s) 65
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 1 cut(s) 227
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 65, 320
BmrFI CCNGG 2 cut(s) 65, 320
BpiI GAAGAC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 110, 351
BpuMI CCSGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 295, 449
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 320
BseLI CCNNNNNNNGG 3 cut(s) 273, 295, 449
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 3 cut(s) 132, 215, 420
Bsh1236I CGCG 6 cut(s) 95, 161, 183, 231, 340, 412
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 5, 487
BsiEI CGRYCG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 273, 295, 449
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 2 cut(s) 5, 487
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 96, 232, 322
Bsp1720I GCTNAGC 1 cut(s) 141
Bsp68I TCGCGA 1 cut(s) 95
BspACI CCGC 3 cut(s) 159, 226, 271
BspANI GGCC 2 cut(s) 5, 487
BspCNI CTCAG 3 cut(s) 133, 214, 421
BspFNI CGCG 6 cut(s) 95, 161, 183, 231, 340, 412
BspPI GGATC 2 cut(s) 91, 330
BspT104I TTCGAA 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 259
BssMI GATC 3 cut(s) 96, 232, 322
Bst2UI CCWGG 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 33, 186
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 141, 201, 429
BstFNI CGCG 6 cut(s) 95, 161, 183, 231, 340, 412
BstHHI GCGC 3 cut(s) 231, 342, 414
BstKTI GATC 3 cut(s) 99, 235, 325
BstMBI GATC 3 cut(s) 96, 232, 322
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 146, 206, 223, 268
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 63, 318
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 6 cut(s) 95, 161, 183, 231, 340, 412
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 5, 487
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 3 cut(s) 231, 342, 414
DdeI CTNAG 3 cut(s) 141, 201, 429
DpnI GATC 3 cut(s) 98, 234, 324
DpnII GATC 3 cut(s) 96, 232, 322
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 33, 186
EarI CTCTTC 2 cut(s) 33, 186
EcoRII CCWGG 1 cut(s) 318
FaiI YATR 4 cut(s) 104, 315, 329, 494
FalI AAGNNNNNCTT 2 cut(s) 129, 161
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 150
GlaI GCGC 3 cut(s) 230, 341, 413
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 5, 487
HapII CCGG 1 cut(s) 65
HhaI GCGC 3 cut(s) 231, 342, 414
Hin6I GCGC 3 cut(s) 229, 340, 412
HinP1I GCGC 3 cut(s) 229, 340, 412
HinfI GANTC 5 cut(s) 118, 169, 174, 350, 479
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 204, 430
Hpy188III TCNNGA 4 cut(s) 94, 115, 127, 236
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 62, 157
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 206, 223, 268
HpyF3I CTNAG 3 cut(s) 141, 201, 429
HspAI GCGC 3 cut(s) 229, 340, 412
Kzo9I GATC 3 cut(s) 96, 232, 322
LmnI GCTCC 2 cut(s) 71, 223
LpnPI CCDG 5 cut(s) 78, 266, 305, 332, 367
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 13, 480
MalI GATC 3 cut(s) 98, 234, 324
MbiI CCGCTC 1 cut(s) 226
MboI GATC 3 cut(s) 96, 232, 322
MboII GAAGA 5 cut(s) 50, 142, 203, 296, 399
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 389, 437
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 168, 488
MnlI CCTC 7 cut(s) 34, 76, 267, 346, 412, 424, 479
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 65, 320
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 6 cut(s) 95, 161, 183, 231, 340, 412
MwoI GCNNNNNNNGC 4 cut(s) 146, 206, 223, 268
NciI CCSGG 1 cut(s) 65
NdeII GATC 3 cut(s) 96, 232, 322
NmuCI GTSAC 2 cut(s) 13, 480
NruI TCGCGA 1 cut(s) 95
NspV TTCGAA 1 cut(s) 53
PctI GAATGC 1 cut(s) 202
PfeI GAWTC 3 cut(s) 118, 169, 350
PfoI TCCNGGA 2 cut(s) 63, 318
PkrI GCNGC 1 cut(s) 228
Ple19I CGATCG 1 cut(s) 235
PleI GAGTC 2 cut(s) 168, 487
PpsI GAGTC 2 cut(s) 168, 487
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PvuI CGATCG 1 cut(s) 235
RruI TCGCGA 1 cut(s) 95
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 96, 232, 322
SchI GAGTC 2 cut(s) 168, 488
ScrFI CCNGG 2 cut(s) 65, 320
SfcI CTRYAG 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 125, 366
SmoI CTYRAG 2 cut(s) 125, 366
Sse9I AATT 2 cut(s) 389, 437
SsiI CCGC 3 cut(s) 159, 226, 271
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 63, 318
TaqI TCGA 4 cut(s) 53, 114, 172, 235
TasI AATT 2 cut(s) 389, 437
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 3 cut(s) 118, 169, 350
TseFI GTSAC 2 cut(s) 13, 480
Tsp45I GTSAC 2 cut(s) 13, 480
TspDTI ATGAA 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.