Rroxscaffold_2G00128590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000314
Physical Location & Seq
Forward (+)
64366135 .. 64367503
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128590.1

Sequence Viewer

Length: 411 bp
ATGGCCGGTGTTGCCACCAATTATGACGACATTACAACGGAAGAGGCTTTTGTTGAGAAGCCTATCCCGGAGGGAGCAGCGTCGATGAGACTATCGCGATCCTTAGGGAGAATATCGAGAACCATAGCAAGAAGGCGTACGCGGATCTTGCCGAGAAACTGCAAAATCGAAAGGCTCCACCGCGAGTTTGAGCGACACACCATGTTCTATGACATGGTAGTTGGAGACAAAGCCGATCTTAGGACAGCTTCAGCTCCAAAACTGCACTTGAAGATCTCCTTCGTCAACCAACAGAGATACCTTGGGGGCAATATTACTCCTTCTACGAGCCAAATTTCTTTCAAGTGTCCGACACGAAGTATCTTTGTTATTTTCTTACAAGCTCCCGCAAGAGGGATTTTCATGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.49

Weight (kDa)

10.45

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 97, 142, 183
AciI CCGC 3 cut(s) 142, 181, 387
AclWI GGATC 2 cut(s) 93, 152
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 3 cut(s) 240, 392, 393
AgsI TTSAA 2 cut(s) 271, 343
AluBI AGCT 3 cut(s) 248, 254, 383
AluI AGCT 3 cut(s) 248, 254, 383
Alw26I GTCTC 2 cut(s) 82, 219
AlwI GGATC 2 cut(s) 93, 152
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 82, 219
BglII AGATCT 1 cut(s) 273
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 392, 393
Bse118I RCCGGY 1 cut(s) 5
Bse21I CCTNAGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 301
BseLI CCNNNNNNNGG 3 cut(s) 240, 392, 393
BseXI GCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 248
Bsh1236I CGCG 3 cut(s) 97, 142, 183
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 6, 68
BsiWI CGTACG 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 240, 392, 393
BsmAI GTCTC 2 cut(s) 82, 219
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 98, 144, 235, 273
Bsp68I TCGCGA 1 cut(s) 97
BspACI CCGC 3 cut(s) 142, 181, 387
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 3 cut(s) 97, 142, 183
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 2 cut(s) 93, 152
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 4 cut(s) 98, 144, 235, 273
BssT1I CCWWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 103, 239
BstFNI CGCG 3 cut(s) 97, 142, 183
BstKTI GATC 4 cut(s) 101, 147, 238, 276
BstMAI GTCTC 2 cut(s) 82, 219
BstMBI GATC 4 cut(s) 98, 144, 235, 273
BstMWI GCNNNNNNNGC 2 cut(s) 11, 148
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 3 cut(s) 97, 142, 183
BstV1I GCAGC 1 cut(s) 89
BstX2I RGATCY 2 cut(s) 144, 273
BstYI RGATCY 2 cut(s) 144, 273
Bsu36I CCTNAGG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 5
BtuMI TCGCGA 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 5
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 138
CviAII CATG 3 cut(s) 202, 214, 403
CviJI RGCY 9 cut(s) 5, 47, 61, 175, 233, 248, 254, 330, 383
CviKI_1 RGCY 9 cut(s) 5, 47, 61, 175, 233, 248, 254, 330, 383
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 2 cut(s) 103, 239
DpnI GATC 4 cut(s) 100, 146, 237, 275
DpnII GATC 4 cut(s) 98, 144, 235, 273
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 3 cut(s) 205, 217, 406
FaiI YATR 7 cut(s) 24, 125, 203, 210, 215, 404, 409
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 263, 295
FatI CATG 3 cut(s) 201, 213, 402
FauI CCCGC 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 6, 68
HgaI GACGC 1 cut(s) 69
Hin1II CATG 3 cut(s) 205, 217, 406
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HpaII CCGG 2 cut(s) 6, 68
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 2 cut(s) 96, 117
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 126, 289, 330
HpyCH4V TGCA 2 cut(s) 162, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 148
HpyF3I CTNAG 2 cut(s) 103, 239
Hsp92II CATG 3 cut(s) 205, 217, 406
Kzo9I GATC 4 cut(s) 98, 144, 235, 273
LmnI GCTCC 4 cut(s) 74, 180, 259, 388
LpnPI CCDG 2 cut(s) 19, 81
Lsp1109I GCAGC 1 cut(s) 89
MalI GATC 4 cut(s) 100, 146, 237, 275
MboI GATC 4 cut(s) 98, 144, 235, 273
MboII GAAGA 2 cut(s) 53, 283
MflI RGATCY 2 cut(s) 144, 273
MluCI AATT 2 cut(s) 19, 333
MmeI TCCRAC 2 cut(s) 202, 374
MnlI CCTC 3 cut(s) 37, 64, 386
MspI CCGG 2 cut(s) 6, 68
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 3 cut(s) 97, 142, 183
MwoI GCNNNNNNNGC 2 cut(s) 11, 148
NciI CCSGG 1 cut(s) 68
NdeII GATC 4 cut(s) 98, 144, 235, 273
NlaIII CATG 3 cut(s) 205, 217, 406
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 177
NruI TCGCGA 1 cut(s) 97
Pfl23II CGTACG 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 79
PspLI CGTACG 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 176
PsuI RGATCY 2 cut(s) 144, 273
RruI TCGCGA 1 cut(s) 97
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 4 cut(s) 98, 144, 235, 273
ScrFI CCNGG 1 cut(s) 68
SetI ASST 4 cut(s) 250, 256, 303, 385
Sse9I AATT 2 cut(s) 19, 333
SsiI CCGC 3 cut(s) 142, 181, 387
SspI AATATT 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 301
TaqI TCGA 3 cut(s) 83, 116, 168
TasI AATT 2 cut(s) 19, 333
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 391
TspGWI ACGGA 1 cut(s) 53
XapI RAATTY 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.