Rmu_sc0000271.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000271.1
OG0000314
Physical Location & Seq
Reverse (-)
137202 .. 137930
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000271.1_g000027.1.cds

Sequence Viewer

Length: 729 bp
atgatgaccaatgttgccaccattggcgacactacgacaagagaggctttcgttccaaagcctattccagaggaagcgaccttcgaggaaaaactcgcgttcatcatggagaatatcgagaaccatcgtgcgaaggtagctgctaactttgacagggaaaccgcaaagacaaatcatctcatacgcgaactggatgagcatatcgcccaacggactgaggataccaagcgacaaaagcaagtcatggaggccatcgcgaaccaaaacaagcagacctcatcggagttcgcgaccttgcgtaaagaaggttccagcttggttactcaagtcaattcgcatcaaagtgaatcggaaagtcaaaaatctgcacgcaaagaggtcgtttctgagactaacttgcctataggtggcaatgaacctaaaggactcactggtgagtcacagccttacatagaggctgtgcatggagaagataatccacgagattgttcttctgacaataaaattgtctctgaacagacatgtgatttctccaccgatcaagccaaatacgtggctactgatcagatgcatggggggcaagacgtggcccatgatcaacctcctgatcatccgaaacggcctcgtgaatcaacagaaaaatacaagtgccaggaagtcattaaacatggttcagcgaatcaattggctatttacaatagagagggcccacaagaaggacttatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.07

Weight (kDa)

5.27

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 98, 186, 257, 290
AciI CCGC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 407, 716
AflIII ACRYGT 1 cut(s) 521
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 2 cut(s) 140, 315
AluI AGCT 2 cut(s) 140, 315
Alw26I GTCTC 2 cut(s) 383, 514
AoxI GGCC 4 cut(s) 249, 588, 620, 706
ApaI GGGCCC 1 cut(s) 710
ApeKI GCWGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 589, 706, 707
AsuHPI GGTGA 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 710
BauI CACGAG 2 cut(s) 480, 624
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 132, 260
BceAI ACGGC 1 cut(s) 635
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 1 cut(s) 653
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 3 cut(s) 562, 595, 607
BcoDI GTCTC 2 cut(s) 383, 514
BfmI CTRYAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 3 cut(s) 589, 706, 707
BmiI GGNNCC 2 cut(s) 310, 708
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 2 cut(s) 346, 558
BpuEI CTTGAG 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 553
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 716
Bse1I ACTGG 2 cut(s) 195, 436
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 199, 610
BseLI CCNNNNNNNGG 2 cut(s) 407, 716
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 2 cut(s) 207, 378
BseNI ACTGG 2 cut(s) 195, 436
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 4 cut(s) 98, 186, 257, 290
BshFI GGCC 4 cut(s) 251, 590, 622, 708
BslI CCNNNNNNNGG 2 cut(s) 407, 716
BsmAI GTCTC 2 cut(s) 383, 514
BsnI GGCC 4 cut(s) 251, 590, 622, 708
Bsp120I GGGCCC 1 cut(s) 706
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 4 cut(s) 538, 562, 595, 607
Bsp68I TCGCGA 2 cut(s) 257, 290
BspACI CCGC 1 cut(s) 162
BspANI GGCC 4 cut(s) 251, 590, 622, 708
BspCNI CTCAG 2 cut(s) 208, 379
BspFNI CGCG 4 cut(s) 98, 186, 257, 290
BspLI GGNNCC 2 cut(s) 310, 708
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 2 cut(s) 195, 436
BssMI GATC 4 cut(s) 538, 562, 595, 607
BssSI CACGAG 2 cut(s) 480, 624
Bst2BI CACGAG 2 cut(s) 480, 624
Bst2UI CCWGG 1 cut(s) 653
BstBAI YACGTR 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 216, 387
BstF5I GGATG 2 cut(s) 199, 610
BstFNI CGCG 4 cut(s) 98, 186, 257, 290
BstKTI GATC 4 cut(s) 541, 565, 598, 610
BstMAI GTCTC 2 cut(s) 383, 514
BstMBI GATC 4 cut(s) 538, 562, 595, 607
BstMWI GCNNNNNNNGC 3 cut(s) 137, 235, 577
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 402
BstSLI GKGCMC 1 cut(s) 710
BstUI CGCG 4 cut(s) 98, 186, 257, 290
BstV1I GCAGC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 553
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 4 cut(s) 251, 590, 622, 708
BtgZI GCGATG 1 cut(s) 238
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 2 cut(s) 199, 610
BtsIMutI CAGTG 1 cut(s) 429
BtuMI TCGCGA 2 cut(s) 257, 290
Cac8I GCNNGC 1 cut(s) 370
Cfr13I GGNCC 3 cut(s) 589, 706, 707
CviAII CATG 7 cut(s) 106, 244, 464, 522, 572, 593, 668
DdeI CTNAG 2 cut(s) 216, 387
DpnI GATC 4 cut(s) 540, 564, 597, 609
DpnII GATC 4 cut(s) 538, 562, 595, 607
Eco24I GRGCYC 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 651
EcoT22I ATGCAT 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 710
FaeI CATG 7 cut(s) 109, 247, 467, 525, 575, 596, 671
FalI AAGNNNNNCTT 3 cut(s) 31, 63, 705
FatI CATG 7 cut(s) 105, 243, 463, 521, 571, 592, 667
FbaI TGATCA 3 cut(s) 562, 595, 607
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 206, 597
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 4 cut(s) 251, 590, 622, 708
Hin1II CATG 7 cut(s) 109, 247, 467, 525, 575, 596, 671
HinfI GANTC 5 cut(s) 347, 426, 437, 629, 679
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 7 cut(s) 283, 352, 388, 496, 514, 567, 615
Hpy188III TCNNGA 6 cut(s) 68, 118, 256, 289, 605, 626
HpyAV CCTTC 4 cut(s) 91, 127, 299, 710
HpyCH4IV ACGT 2 cut(s) 552, 585
HpyCH4V TGCA 3 cut(s) 368, 463, 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 235, 577
HpyF3I CTNAG 2 cut(s) 216, 387
HpySE526I ACGT 2 cut(s) 552, 585
Hsp92II CATG 7 cut(s) 109, 247, 467, 525, 575, 596, 671
Ksp22I TGATCA 3 cut(s) 562, 595, 607
Kzo9I GATC 4 cut(s) 538, 562, 595, 607
LpnPI CCDG 8 cut(s) 81, 139, 176, 325, 417, 618, 638, 665
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 346, 558
MaeII ACGT 2 cut(s) 552, 585
MaeIII GTNAC 2 cut(s) 319, 438
MalI GATC 4 cut(s) 540, 564, 597, 609
MboI GATC 4 cut(s) 538, 562, 595, 607
MboII GAAGA 2 cut(s) 482, 483
MfeI CAATTG 1 cut(s) 683
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 3 cut(s) 331, 504, 683
MlyI GAGTC 2 cut(s) 420, 446
Mph1103I ATGCAT 1 cut(s) 573
MseI TTAA 2 cut(s) 663, 727
MslI CAYNNNNRTG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 653
MunI CAATTG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 4 cut(s) 98, 186, 257, 290
MwoI GCNNNNNNNGC 3 cut(s) 137, 235, 577
NdeII GATC 4 cut(s) 538, 562, 595, 607
NlaIII CATG 7 cut(s) 109, 247, 467, 525, 575, 596, 671
NlaIV GGNNCC 2 cut(s) 310, 708
NmuCI GTSAC 1 cut(s) 438
NruI TCGCGA 2 cut(s) 257, 290
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 1 cut(s) 525
PciI ACATGT 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PfeI GAWTC 3 cut(s) 347, 629, 679
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 2 cut(s) 420, 445
PpsI GAGTC 2 cut(s) 420, 445
Ppu21I YACGTR 1 cut(s) 553
PscI ACATGT 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 2 cut(s) 310, 708
PspOMI GGGCCC 1 cut(s) 706
PspPI GGNCC 3 cut(s) 589, 706, 707
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
RruI TCGCGA 2 cut(s) 257, 290
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 663, 727
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 4 cut(s) 538, 562, 595, 607
Sau96I GGNCC 3 cut(s) 589, 706, 707
SchI GAGTC 2 cut(s) 420, 446
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 2 cut(s) 346, 558
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 3 cut(s) 331, 504, 683
SsiI CCGC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 651
TaiI ACGT 2 cut(s) 555, 588
TaqI TCGA 2 cut(s) 84, 117
TasI AATT 3 cut(s) 331, 504, 683
TfiI GAWTC 3 cut(s) 347, 629, 679
Tru1I TTAA 2 cut(s) 663, 727
Tru9I TTAA 2 cut(s) 663, 727
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 438
TspDTI ATGAA 2 cut(s) 91, 429
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 436
XceI RCATGY 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.