Rroxscaffold_5G00344470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000314
Physical Location & Seq
Reverse (-)
14589802 .. 14590170
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344470.1

Sequence Viewer

Length: 369 bp
ATGAGACTATCGCGATCCTTATGGAGAATGTCGAGAACCATCGCAAGAAGCCGGACGCGGATCTCGCCGCAGAAACCGCAAAGTCGAAAGGCTCCTCCGCGAGTTCGAGCAGCGTATGACTCTCTATGCGGAAAATACCAGCAGCAGGTTACACAGAGAGGGCGCCTTGAAGGCGCAAGCTATAACTATCGCCGCCGCACAAGACGAGCGTCATACGACAATTTTGAACGCTATAGCGGAACAAAACAAGCATACCTCATCGTAGTTCGCGACCTTGTGCAAGGAAGGTCCCGGCTTGACTACTCAAGTCAATTCACGGCAAGGCGAATTGGAAAGCCAAAAATCTTCGCGCGAAGAGGTTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.46

Weight (kDa)

11.69

Isoelectric Point (pI)

71.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 162
AccII CGCG 6 cut(s) 13, 58, 100, 270, 350, 352
AciI CCGC 8 cut(s) 58, 68, 77, 98, 129, 193, 196, 237
AclWI GGATC 2 cut(s) 9, 68
AcyI GRCGYC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 2 cut(s) 170, 227
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
AlwI GGATC 2 cut(s) 9, 68
ApeKI GCWGC 2 cut(s) 110, 142
AspLEI GCGC 3 cut(s) 165, 176, 352
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 292
AvaII GGWCC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 122, 154
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 333
BcnI CCSGG 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 5 cut(s) 68, 111, 143, 193, 196
BlsI GCNGC 5 cut(s) 69, 112, 144, 194, 197
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 93, 164, 290
BmrFI CCNGG 1 cut(s) 292
BoxI GACNNNNGTC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 122, 154
Bsh1236I CGCG 6 cut(s) 13, 58, 100, 270, 350, 352
BshNI GGYRCC 1 cut(s) 162
BsiSI CCGG 2 cut(s) 52, 292
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 14, 60
Bsp68I TCGCGA 2 cut(s) 13, 270
BspACI CCGC 8 cut(s) 58, 68, 77, 98, 129, 193, 196, 237
BspFNI CGCG 6 cut(s) 13, 58, 100, 270, 350, 352
BspLI GGNNCC 3 cut(s) 93, 164, 290
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 2 cut(s) 9, 68
BspT107I GGYRCC 1 cut(s) 162
BssMI GATC 2 cut(s) 14, 60
BssNI GRCGYC 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 178
BstFNI CGCG 6 cut(s) 13, 58, 100, 270, 350, 352
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 3 cut(s) 165, 176, 352
BstKTI GATC 2 cut(s) 17, 63
BstMBI GATC 2 cut(s) 14, 60
BstMWI GCNNNNNNNGC 3 cut(s) 64, 76, 171
BstPAI GACNNNNGTC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 232
BstUI CGCG 6 cut(s) 13, 58, 100, 270, 350, 352
BstV1I GCAGC 2 cut(s) 122, 154
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 25
BtuMI TCGCGA 2 cut(s) 13, 270
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 3 cut(s) 165, 176, 352
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 2 cut(s) 64, 198
CviJI RGCY 5 cut(s) 51, 92, 180, 295, 337
CviKI_1 RGCY 5 cut(s) 51, 92, 180, 295, 337
DinI GGCGCC 1 cut(s) 164
DpnI GATC 2 cut(s) 16, 62
DpnII GATC 2 cut(s) 14, 60
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 288
EgeI GGCGCC 1 cut(s) 164
EheI GGCGCC 1 cut(s) 164
FaiI YATR 7 cut(s) 22, 117, 127, 183, 214, 234, 253
FaqI GGGAC 1 cut(s) 274
Fnu4HI GCNGC 5 cut(s) 68, 111, 143, 193, 196
Fsp4HI GCNGC 5 cut(s) 68, 111, 143, 193, 196
GlaI GCGC 3 cut(s) 164, 175, 351
GluI GCNGC 5 cut(s) 68, 111, 143, 193, 196
HaeII RGCGCY 1 cut(s) 166
HapII CCGG 2 cut(s) 52, 292
HgaI GACGC 2 cut(s) 64, 198
HhaI GCGC 3 cut(s) 165, 176, 352
Hin1I GRCGYC 1 cut(s) 163
Hin6I GCGC 3 cut(s) 163, 174, 350
HinP1I GCGC 3 cut(s) 163, 174, 350
HinfI GANTC 1 cut(s) 119
HpaII CCGG 2 cut(s) 52, 292
Hpy188III TCNNGA 3 cut(s) 12, 33, 269
HpyAV CCTTC 2 cut(s) 164, 279
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 76, 171
Hsp92I GRCGYC 1 cut(s) 163
HspAI GCGC 3 cut(s) 163, 174, 350
KasI GGCGCC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 14, 60
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 65, 131, 152, 305
Lsp1109I GCAGC 2 cut(s) 122, 154
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 16, 62
MboI GATC 2 cut(s) 14, 60
MboII GAAGA 2 cut(s) 337, 366
MflI RGATCY 1 cut(s) 60
MluCI AATT 3 cut(s) 220, 311, 327
Mly113I GGCGCC 1 cut(s) 163
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 4 cut(s) 105, 152, 266, 350
MspI CCGG 2 cut(s) 52, 292
MspR9I CCNGG 1 cut(s) 292
MvnI CGCG 6 cut(s) 13, 58, 100, 270, 350, 352
MwoI GCNNNNNNNGC 3 cut(s) 64, 76, 171
NarI GGCGCC 1 cut(s) 163
NciI CCSGG 1 cut(s) 292
NdeII GATC 2 cut(s) 14, 60
NlaIV GGNNCC 3 cut(s) 93, 164, 290
NruI TCGCGA 2 cut(s) 13, 270
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PkrI GCNGC 5 cut(s) 69, 112, 144, 194, 197
PleI GAGTC 1 cut(s) 113
PluTI GGCGCC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 288
PshAI GACNNNNGTC 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 288
PspN4I GGNNCC 3 cut(s) 93, 164, 290
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
PsuI RGATCY 1 cut(s) 60
RruI TCGCGA 2 cut(s) 13, 270
SatI GCNGC 5 cut(s) 68, 111, 143, 193, 196
Sau3AI GATC 2 cut(s) 14, 60
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 292
SetI ASST 6 cut(s) 150, 182, 258, 276, 290, 361
SfcI CTRYAG 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 164
SinI GGWCC 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 3 cut(s) 220, 311, 327
SsiI CCGC 8 cut(s) 58, 68, 77, 98, 129, 193, 196, 237
SspDI GGCGCC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 290
TaqI TCGA 3 cut(s) 32, 85, 106
TasI AATT 3 cut(s) 220, 311, 327
TauI GCSGC 3 cut(s) 70, 195, 198
TseI GCWGC 2 cut(s) 110, 142
VpaK11BI GGWCC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.