FvH4_1g22661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000314
Physical Location & Seq
Forward (+)
14583186 .. 14583461
276 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22661.t1

Sequence Viewer

Length: 276 bp
ATGTTGTGCAACCAAGCGAGAACGGCGACGCCAGTGTGTTGCGTGACGGAGATCAGAGATCGGCTCGCATTGCCGACACCTCTGGTTTTGATGGTTAGAGATCGGAGCTCCGCTGCTCGATGCGACCGCGCTGGTGAAGAAGCATCGACGAAGCTTGTGCTAGAGTCGACATATCTGAGAACTTTTGTTGGTGGATCTGAGAACTGTGCTGGTGGATCTGAGAACGTTGCAGGCAACCTCAACCTCGTCAGTGGCGGAGGCGCGTTGGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.55

Weight (kDa)

5.31

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AccII CGCG 2 cut(s) 129, 263
AciI CCGC 3 cut(s) 111, 127, 255
AclI AACGTT 1 cut(s) 225
AclWI GGATC 2 cut(s) 202, 223
AcyI GRCGYC 1 cut(s) 29
AluBI AGCT 2 cut(s) 108, 154
AluI AGCT 2 cut(s) 108, 154
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 2 cut(s) 202, 223
ApeKI GCWGC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 131, 263
AsuHPI GGTGA 1 cut(s) 146
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BfaI CTAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmsI GCATC 2 cut(s) 110, 152
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BsaHI GRCGYC 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 3 cut(s) 167, 189, 210
BseNI ACTGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 2 cut(s) 129, 263
Bsh1285I CGRYCG 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 5 cut(s) 51, 58, 100, 194, 215
BspACI CCGC 3 cut(s) 111, 127, 255
BspCNI CTCAG 3 cut(s) 168, 190, 211
BspFNI CGCG 2 cut(s) 129, 263
BspPI GGATC 2 cut(s) 202, 223
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 32
BssMI GATC 5 cut(s) 51, 58, 100, 194, 215
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 66, 232
BstDEI CTNAG 3 cut(s) 176, 198, 219
BstFNI CGCG 2 cut(s) 129, 263
BstHHI GCGC 2 cut(s) 131, 263
BstKTI GATC 5 cut(s) 54, 61, 103, 197, 218
BstMBI GATC 5 cut(s) 51, 58, 100, 194, 215
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 23, 70
BstUI CGCG 2 cut(s) 129, 263
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 194, 215
BstYI RGATCY 2 cut(s) 194, 215
BtsIMutI CAGTG 2 cut(s) 39, 256
Cac8I GCNNGC 2 cut(s) 66, 232
CfoI GCGC 2 cut(s) 131, 263
CseI GACGC 1 cut(s) 37
CviJI RGCY 3 cut(s) 64, 108, 154
CviKI_1 RGCY 3 cut(s) 64, 108, 154
DdeI CTNAG 3 cut(s) 176, 198, 219
DpnI GATC 5 cut(s) 53, 60, 102, 196, 217
DpnII GATC 5 cut(s) 51, 58, 100, 194, 215
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 110
FaiI YATR 1 cut(s) 172
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 161
GlaI GCGC 2 cut(s) 130, 262
GluI GCNGC 1 cut(s) 114
HgaI GACGC 1 cut(s) 37
HhaI GCGC 2 cut(s) 131, 263
Hin1I GRCGYC 1 cut(s) 29
Hin6I GCGC 2 cut(s) 129, 261
HinP1I GCGC 2 cut(s) 129, 261
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 164
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 5 cut(s) 56, 105, 177, 199, 220
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 2 cut(s) 31, 151
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 9, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 70
HpyF3I CTNAG 3 cut(s) 176, 198, 219
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 29
HspAI GCGC 2 cut(s) 129, 261
Kzo9I GATC 5 cut(s) 51, 58, 100, 194, 215
LmnI GCTCC 2 cut(s) 105, 113
LpnPI CCDG 5 cut(s) 45, 68, 117, 195, 216
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 110, 152
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 53, 60, 102, 196, 217
MboI GATC 5 cut(s) 51, 58, 100, 194, 215
MboII GAAGA 1 cut(s) 149
MflI RGATCY 2 cut(s) 194, 215
MhlI GDGCHC 1 cut(s) 110
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 4 cut(s) 90, 248, 251, 254
MspA1I CMGCKG 1 cut(s) 113
MvnI CGCG 2 cut(s) 129, 263
MwoI GCNNNNNNNGC 2 cut(s) 23, 70
NdeII GATC 5 cut(s) 51, 58, 100, 194, 215
NmuCI GTSAC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 225
PsuI RGATCY 2 cut(s) 194, 215
SacI GAGCTC 1 cut(s) 110
SalI GTCGAC 1 cut(s) 166
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 5 cut(s) 51, 58, 100, 194, 215
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 110
SetI ASST 6 cut(s) 82, 110, 156, 228, 240, 246
SfaNI GCATC 2 cut(s) 110, 152
SsiI CCGC 3 cut(s) 111, 127, 255
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 110
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 118, 146, 167
TscAI CASTG 2 cut(s) 39, 256
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 2 cut(s) 39, 256
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.