Rmu_sc0008339.1_g000025

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008339.1
Physical Location & Seq
Forward (+)
100249 .. 101668
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008339.1_g000025.1.cds

Sequence Viewer

Length: 747 bp
atggagaatgtcgataatcatcgcaagaagatggacgttgattttgccagggaaactgcgaaggcgaatcggatcgcacgcgaactgagcgagcgtatcgcccaacagactgaggataccaagcaacaacagcaagtcatggaggccatcgcgaaccaaaacaagcatacctcatcggagttcacgaccttgcgcaaggaaggtccaagcttgactactcaagtcggttcacagcaaggcgaattggaaagccagaaatctttgctcaaagaggttgtttctgaggttgaattgcctatagatggcaataaacctaaatgcctcattaatgagtcacgaccttacatagaggctttgcatggagaagatggagcaaccattgaggaaacactcgcgatcctcatggagaatgtcgataatcatcgcaagatcaaatacaatagccaatatgtggcttattctgaagacactatgttctatgatatggtagttggcgacaaagctgaacttgggacattattatctccaaaattacaattgaagatctcgcttcgccaaccaacaaagatacttagggggcaatattactccttctacgagccaaatttctttcaagcgtctgacgcgaagtatctttgttatcttcttacaagctcttacaagagggattttcatgctataaattttgatgcatcggagcttggagtgaagcatagatggcctcccccgtggccttctagaggttag

Protein Analysis

248

Amino Acids

28.47

Weight (kDa)

5.93

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 451
AccII CGCG 4 cut(s) 81, 152, 395, 626
AclWI GGATC 2 cut(s) 80, 391
AcsI RAATTY 2 cut(s) 604, 682
AcuI CTGAAG 1 cut(s) 483
AfiI CCNNNNNNNGG 3 cut(s) 302, 451, 740
AgsI TTSAA 3 cut(s) 290, 541, 614
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 4 cut(s) 210, 503, 654, 700
AluI AGCT 4 cut(s) 210, 503, 654, 700
AlwI GGATC 2 cut(s) 80, 391
AoxI GGCC 3 cut(s) 144, 719, 731
ApoI RAATTY 2 cut(s) 604, 682
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AseI ATTAAT 1 cut(s) 327
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 471
BccI CCATC 5 cut(s) 25, 155, 296, 362, 711
BciT130I CCWGG 1 cut(s) 49
BciVI GTATCC 1 cut(s) 109
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 1 cut(s) 297
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 2 cut(s) 679, 701
BpiI GAAGAC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 204
BsaBI GATNNNNATC 2 cut(s) 18, 420
BsaJI CCNNGG 2 cut(s) 48, 728
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 451, 740
Bse8I GATNNNNATC 2 cut(s) 18, 420
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 48, 728
BseJI GATNNNNATC 2 cut(s) 18, 420
BseLI CCNNNNNNNGG 3 cut(s) 302, 451, 740
BseMII CTCAG 3 cut(s) 77, 102, 273
Bsh1236I CGCG 4 cut(s) 81, 152, 395, 626
BshFI GGCC 3 cut(s) 146, 721, 733
BslFI GGGAC 1 cut(s) 526
BslI CCNNNNNNNGG 3 cut(s) 302, 451, 740
BsmFI GGGAC 1 cut(s) 526
BsnI GGCC 3 cut(s) 146, 721, 733
Bsp143I GATC 4 cut(s) 72, 396, 429, 543
Bsp68I TCGCGA 2 cut(s) 152, 395
BspANI GGCC 3 cut(s) 146, 721, 733
BspCNI CTCAG 3 cut(s) 78, 103, 274
BspFNI CGCG 4 cut(s) 81, 152, 395, 626
BspPI GGATC 2 cut(s) 80, 391
BssECI CCNNGG 2 cut(s) 48, 728
BssMI GATC 4 cut(s) 72, 396, 429, 543
Bst2UI CCWGG 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 79, 92
BstDEI CTNAG 4 cut(s) 86, 111, 282, 572
BstDSI CCRYGG 1 cut(s) 728
BstENI CCTNNNNNAGG 1 cut(s) 738
BstFNI CGCG 4 cut(s) 81, 152, 395, 626
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 75, 399, 432, 546
BstMBI GATC 4 cut(s) 72, 396, 429, 543
BstMWI GCNNNNNNNGC 4 cut(s) 87, 130, 623, 718
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 4 cut(s) 81, 152, 395, 626
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 146, 721, 733
BtgI CCRYGG 1 cut(s) 728
BtgZI GCGATG 3 cut(s) 5, 133, 407
BtuMI TCGCGA 2 cut(s) 152, 395
Cac8I GCNNGC 2 cut(s) 79, 92
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 2 cut(s) 606, 632
CviAII CATG 4 cut(s) 139, 359, 403, 674
DdeI CTNAG 4 cut(s) 86, 111, 282, 572
DpnI GATC 4 cut(s) 74, 398, 431, 545
DpnII GATC 4 cut(s) 72, 396, 429, 543
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 483
EcoNI CCTNNNNNAGG 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 694
FaeI CATG 4 cut(s) 142, 362, 406, 677
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 1 cut(s) 526
FatI CATG 4 cut(s) 138, 358, 402, 673
FspBI CTAG 1 cut(s) 738
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 1 cut(s) 194
HaeIII GGCC 3 cut(s) 146, 721, 733
HgaI GACGC 2 cut(s) 606, 632
HhaI GCGC 1 cut(s) 195
Hin1II CATG 4 cut(s) 142, 362, 406, 677
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 2 cut(s) 67, 332
Hpy166II GTNNAC 2 cut(s) 183, 230
Hpy188I TCNGA 6 cut(s) 72, 178, 283, 463, 622, 697
Hpy188III TCNNGA 5 cut(s) 151, 184, 336, 394, 738
Hpy8I GTNNAC 2 cut(s) 183, 230
HpyAV CCTTC 4 cut(s) 55, 194, 601, 744
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 358, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 130, 623, 718
HpyF3I CTNAG 4 cut(s) 86, 111, 282, 572
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 4 cut(s) 142, 362, 406, 677
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 72, 396, 429, 543
LmnI GCTCC 2 cut(s) 371, 697
LpnPI CCDG 3 cut(s) 34, 61, 266
LweI GCATC 2 cut(s) 679, 701
MaeI CTAG 1 cut(s) 738
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 333
MalI GATC 4 cut(s) 74, 398, 431, 545
MboI GATC 4 cut(s) 72, 396, 429, 543
MboII GAAGA 5 cut(s) 40, 377, 476, 553, 635
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 1 cut(s) 543
MluCI AATT 6 cut(s) 242, 290, 530, 536, 604, 682
MlyI GAGTC 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 49
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 4 cut(s) 81, 152, 395, 626
MwoI GCNNNNNNNGC 4 cut(s) 87, 130, 623, 718
NdeII GATC 4 cut(s) 72, 396, 429, 543
NlaIII CATG 4 cut(s) 142, 362, 406, 677
NmuCI GTSAC 1 cut(s) 333
NruI TCGCGA 2 cut(s) 152, 395
NsbI TGCGCA 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 451
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 543
RruI TCGCGA 2 cut(s) 152, 395
SaqAI TTAA 1 cut(s) 327
Sau3AI GATC 4 cut(s) 72, 396, 429, 543
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 49
SfaNI GCATC 2 cut(s) 679, 701
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 6 cut(s) 242, 290, 530, 536, 604, 682
SspI AATATT 1 cut(s) 584
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 1 cut(s) 47
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 12, 414
TasI AATT 6 cut(s) 242, 290, 530, 536, 604, 682
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseFI GTSAC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 1 cut(s) 662
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 738
XapI RAATTY 2 cut(s) 604, 682
XbaI TCTAGA 1 cut(s) 737
XspI CTAG 1 cut(s) 738
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.