Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

14870569 .. 14871739

Gene Structure 1171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11061.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACACCGGCCAGAGACATGGAGGGCAAACAATTGATGACGCCTTTGCCAATATATATCCTCTTGTCGATCAGACACAAGTTCATGTTGAATACCAGGCGAAGTTGGATGATCAATTTGTTGTTCATAGCGAAGGAAAGCATGTAGAAGAATTGAATGACCAAGCTACTGGACGTGTTCGAGAGGATGAGCGGAGTCATGAAAAAGAGTTCCATGACGATGGTACCTCACATACGTCTCGTCGTGGTGCTTCCAACCTCTACAGGGGCCCATTCATCTTTGGCGGATGTAAGTTCAAATACAAGGAAGTTGATCTGCTGGCTTGTAGTTATTATGCTCCAAAGTTCCTGGAGCAGAAATTCATTTATGATGATACTGGCCAAACTTTGCAGACAACACATGATGATATGCCTATCTTTGAGGCAGGGACTTACTCACCATTCGATGGTGATTACGTTTATGATTTTTACAAAGAGCCAATTTATGATGAGTGCGTCGATAACTACAAATTGAGCTTTGCCTCCAACATCAGTAAGTCTCACACACAGGAGGTCTACTTTGAATCTCTTGTTGATAAAAATATAAACCAGCAAGTGGTTTCTTATGACAGCCAATTGGTAGCTACCTTTGAAGACATCACGCATTACGACATGGTAGTTGGCGACAAGGCGGATTTCTACTCTATACCATCTGCAAAAGTTCAATTAAAGATTATGCTTTGTCTTAAATCATCATGTAAAAATGTCTCTATACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

253

Amino Acids

28.92

Weight (kDa)

4.82

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	2 cut(s)	446, 595
AccBSI	CCGCTC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	3 cut(s)	193, 285, 671
AcoI	YGGCCR	2 cut(s)	10, 379
AcsI	RAATTY	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	3 cut(s)	265, 446, 595
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	6 cut(s)	92, 157, 298, 563, 632, 704
AjiI	CACGTC	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	96, 348
AluBI	AGCT	3 cut(s)	167, 516, 623
AluI	AGCT	3 cut(s)	167, 516, 623
Alw26I	GTCTC	4 cut(s)	10, 243, 543, 751
AoxI	GGCC	3 cut(s)	10, 268, 379
ApaI	GGGCCC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	268, 269
AsuHPI	GGTGA	2 cut(s)	429, 461
BaeGI	GKGCMC	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	639
BccI	CCATC	3 cut(s)	215, 440, 697
BciT130I	CCWGG	2 cut(s)	98, 350
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	4 cut(s)	10, 243, 543, 751
BfmI	CTRYAG	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	98, 350
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	268, 269
BmiI	GGNNCC	3 cut(s)	226, 269, 270
BmrFI	CCNGG	2 cut(s)	98, 350
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 446, 595
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	175, 382
BseBI	CCWGG	2 cut(s)	98, 350
BseGI	GGATG	3 cut(s)	115, 193, 293
BseLI	CCNNNNNNNGG	3 cut(s)	265, 446, 595
BseNI	ACTGG	2 cut(s)	175, 382
BseSI	GKGCMC	1 cut(s)	272
BshFI	GGCC	3 cut(s)	12, 270, 381
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	3 cut(s)	265, 446, 595
BsmAI	GTCTC	4 cut(s)	10, 243, 543, 751
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	3 cut(s)	12, 270, 381
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	3 cut(s)	70, 112, 313
BspACI	CCGC	3 cut(s)	193, 285, 671
BspANI	GGCC	3 cut(s)	12, 270, 381
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	226, 269, 270
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	175, 382
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	3 cut(s)	70, 112, 313
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	98, 350
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	115, 193, 293
BstKTI	GATC	3 cut(s)	73, 115, 316
BstMAI	GTCTC	4 cut(s)	10, 243, 543, 751
BstMBI	GATC	3 cut(s)	70, 112, 313
BstNI	CCWGG	2 cut(s)	98, 350
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	96, 348
BstSFI	CTRYAG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	639
BstXI	CCANNNNNNTGG	3 cut(s)	20, 170, 221
BsuRI	GGCC	3 cut(s)	12, 270, 381
BtrI	CACGTC	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	115, 193, 293
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	268, 269
CseI	GACGC	2 cut(s)	50, 484
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	8 cut(s)	20, 86, 143, 200, 215, 401, 652, 735
CviJI	RGCY	9 cut(s)	12, 167, 270, 323, 381, 478, 516, 612, 623
CviKI_1	RGCY	9 cut(s)	12, 167, 270, 323, 381, 478, 516, 612, 623
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	3 cut(s)	72, 114, 315
DpnII	GATC	3 cut(s)	70, 112, 313
EaeI	YGGCCR	2 cut(s)	10, 379
EciI	GGCGGA	2 cut(s)	300, 686
Eco24I	GRGCYC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	96, 348
EcoT38I	GRGCYC	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	8 cut(s)	23, 89, 146, 203, 218, 404, 655, 738
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	8 cut(s)	19, 85, 142, 199, 214, 400, 651, 734
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	555
FokI	GGATG	3 cut(s)	122, 200, 300
FriOI	GRGCYC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	12, 270, 381
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	2 cut(s)	50, 484
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	8 cut(s)	23, 89, 146, 203, 218, 404, 655, 738
HinfI	GANTC	2 cut(s)	196, 563
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	429, 461
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	182, 200
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	2 cut(s)	246, 500
HpyAV	CCTTC	1 cut(s)	128
HpyCH4IV	ACGT	3 cut(s)	175, 236, 456
HpyCH4V	TGCA	2 cut(s)	391, 695
HpySE526I	ACGT	3 cut(s)	175, 236, 456
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	8 cut(s)	23, 89, 146, 203, 218, 404, 655, 738
KpnI	GGTACC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	70, 112, 313
LmnI	GCTCC	2 cut(s)	343, 352
MaeII	ACGT	3 cut(s)	175, 236, 456
MalI	GATC	3 cut(s)	72, 114, 315
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	3 cut(s)	70, 112, 313
MboII	GAAGA	2 cut(s)	161, 644
MfeI	CAATTG	2 cut(s)	33, 614
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	8 cut(s)	33, 116, 152, 359, 480, 509, 614, 704
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	3 cut(s)	87, 279, 549
MnlI	CCTC	8 cut(s)	17, 72, 178, 238, 269, 415, 532, 544
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	707, 726
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	98, 350
MunI	CAATTG	2 cut(s)	33, 614
MvaI	CCWGG	2 cut(s)	98, 350
NdeII	GATC	3 cut(s)	70, 112, 313
NlaIII	CATG	8 cut(s)	23, 89, 146, 203, 218, 404, 655, 738
NlaIV	GGNNCC	3 cut(s)	226, 269, 270
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	563
PflMI	CCANNNNNTGG	2 cut(s)	446, 595
PfoI	TCCNGGA	1 cut(s)	348
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	96, 348
PspGI	CCWGG	2 cut(s)	96, 348
PspN4I	GGNNCC	3 cut(s)	226, 269, 270
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	268, 269
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	707, 726
Sau3AI	GATC	3 cut(s)	70, 112, 313
Sau96I	GGNCC	2 cut(s)	268, 269
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	98, 350
SduI	GDGCHC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	8 cut(s)	33, 116, 152, 359, 480, 509, 614, 704
SsiI	CCGC	3 cut(s)	193, 285, 671
StyD4I	CCNGG	2 cut(s)	96, 348
TaiI	ACGT	3 cut(s)	178, 239, 459
TaqI	TCGA	4 cut(s)	69, 181, 444, 498
TasI	AATT	8 cut(s)	33, 116, 152, 359, 480, 509, 614, 704
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	2 cut(s)	707, 726
Tru9I	TTAA	2 cut(s)	707, 726
TspDTI	ATGAA	5 cut(s)	74, 116, 216, 265, 352
Van91I	CCANNNNNTGG	2 cut(s)	446, 595
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.