FvH4_3g36631

Helitron helicase-like domain at N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000080
Physical Location & Seq
Forward (+)
31377833 .. 31380116
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36631.t1

Sequence Viewer

Length: 1725 bp
ATGAACAATCATGATGAGAACGTGAACAATGTGGCAACCAATAATGATGATGGACATACCAACTACACTGAAGCCGTGAATATCGATGGAGATCAAGGTAGTGACAATGAGCATGCAAATGGTCATGAGGCGCAACACAACAACGTTCATCGAGTACCAAGAATGAGACGAGAGCGCATTCACTACAATGTAGCTAGAGATTTCCATGAAGAAAGGGGGGTCCAAGATTTTCAATTGCCCTCACCAATAACATGCCCATACTGTACATCATTGTTATTCCATCGAGAGACCTTCAGTTTGTGTTGCATGAAGGGAAATATTGAATTAGCCCTAATACAGTCTCCTCCTGAAATGGTCCGGCTATTTTCAGACCAAACTGATGAGAGTAAAAAATTCAGACAAAATATTAGAGCCTACAACAACGTGTTTGCATTCACTTCAATGGGTGTACATCTTGATGAAACAATTAACGTCCAAGGTCGTGGACCTTATACCTTTCGTGCTCAAGGTTCTATATATCATAAAATCGGTGGTCTGGTACCGGCGGACGGGAGAAGACCATGGTATCTACAAGCTTATATATATGACACCGAGCATGAGCTTCAGAATCGATTGTCTGAAAGTGAAGTTTTAGAGGGGGGTATAGTGGAAAAAATTCAACAGATACTTAATGAACACAATCCCTTCGTTCAAACATTTCGAAGTCTGGGACAACGTCAAGATTTGCCTAATTGCAAGCTCATCATAAGAGAACAACCTTCTGATCGTCGCCAATACAATTTACCAACTGCATCACAAGTTGCGGTTGTTATTGTAGGAGGTGATGACATCAGTCCAAATGGAAGAGATTTCATTGTACAAACAATAAGCAAACGACTTCATACCGTCAAAGACTTGGTTGGATATTATGATCCAATGCAGTATCCATTATTATTGCCTTATGGAACATATGGATGGGACATCAATAGTCGTGGAAATAACGGAAAGGAAATGACATGTTGCGACTACTACGCATATATGTTACAGATGCGCAAAGGTCATGAAAATCCTCTACATAGAGGAGGGCGTCTCTTACAACAGTATGTTGTAGATAATTATGTAAAAATTGAATCACAAAAGCTCAGATGGCTTCTTAATAATCAAGACAAATTTCGGACAGATGTTCGTCAGGGGCTTGAAGACTCTCTACATTCAGGAGAAAACAATGCAGAACCAAATGACAAGCTTAACAACCCTGATGAATATGATCGCATTGTTAAAGCTGAAATACCAGATCAGAATGAAGAGCCTCGACTATATGATGCAGTGTGTACACATATGATTCATGGCCCATGTGGACCTCTCAATCCACGAAAATCATGTATGAAAAAAGGCACTTGCAATAAGGGTTACCCAAAATCATTTGCGAATTTCACAGTGCAAGGCGAAGATGCATATCCTGTGTATCAAAGACGACCAAACCGACAACCAGTATATTTGCGTGGTCGAGGAAATATGACTGTGGATAACCGCTGGGTGGTTCCCTACAACCCATGGTTGTTATTACGATATAATTGTCACATCAATGTCGAAGTATGCGGTAGTATAAAGAGTGTCAAGTACTTATATAAGTATATCTACAAAGGTCCTGACAGAGTGTCACTTGAGGTGCAGTCCAACCCAGAGTTCGATGAAATTAGCCAATTTGTTGATGCAAGGTGGGTATGCGCACCTAAAGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

575

Amino Acids

66.35

Weight (kDa)

6.58

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helitron_like_N PF14214 336 - 409 2.2e-11 Helitron helicase-like domain at N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1031, 1708
Acc65I GGTACC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 538
AciI CCGC 4 cut(s) 545, 803, 1510, 1578
AclI AACGTT 1 cut(s) 144
AclWI GGATC 1 cut(s) 905
AcsI RAATTY 4 cut(s) 392, 654, 1148, 1408
AcuI CTGAAG 3 cut(s) 90, 277, 587
AcyI GRCGYC 1 cut(s) 1066
AfaI GTAC 7 cut(s) 156, 265, 450, 540, 858, 1312, 1601
AfiI CCNNNNNNNGG 2 cut(s) 548, 1516
AflIII ACRYGT 2 cut(s) 423, 995
AgsI TTSAA 7 cut(s) 233, 323, 441, 659, 692, 1109, 1178
AhdI GACNNNNNGTC 1 cut(s) 1636
AjuI GAANNNNNNNTTGG 2 cut(s) 1649, 1681
AluBI AGCT 8 cut(s) 194, 575, 601, 739, 1120, 1225, 1262, 1718
AluI AGCT 8 cut(s) 194, 575, 601, 739, 1120, 1225, 1262, 1718
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 4 cut(s) 160, 281, 345, 1073
AlwI GGATC 1 cut(s) 905
AoxI GGCC 1 cut(s) 1327
ApoI RAATTY 4 cut(s) 392, 654, 1148, 1408
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
Asp700I GAANNNNTTC 1 cut(s) 654
Asp718I GGTACC 1 cut(s) 538
AspLEI GCGC 4 cut(s) 133, 177, 1032, 1709
AspS9I GGNCC 6 cut(s) 220, 355, 485, 1328, 1337, 1625
AsuHPI GGTGA 2 cut(s) 234, 833
AsuII TTCGAA 1 cut(s) 700
AvaII GGWCC 5 cut(s) 220, 355, 485, 1337, 1625
BaeI ACNNNNGTAYC 2 cut(s) 548, 581
BanI GGYRCC 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 1170, 1202
BbsI GAAGAC 2 cut(s) 562, 1185
Bbv12I GWGCWC 1 cut(s) 505
BccI CCATC 5 cut(s) 44, 80, 288, 948, 1119
BceAI ACGGC 1 cut(s) 59
BciVI GTATCC 1 cut(s) 933
BcoDI GTCTC 4 cut(s) 160, 281, 345, 1073
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 1721
BfuI GTATCC 1 cut(s) 933
BmcAI AGTACT 1 cut(s) 1601
Bme18I GGWCC 5 cut(s) 220, 355, 485, 1337, 1625
BmeRI GACNNNNNGTC 1 cut(s) 1636
BmgT120I GGNCC 6 cut(s) 220, 355, 485, 1328, 1337, 1625
BmiI GGNNCC 3 cut(s) 221, 540, 1521
BmsI GCATC 5 cut(s) 800, 1017, 1291, 1420, 1681
BoxI GACNNNNGTC 1 cut(s) 831
BpiI GAAGAC 2 cut(s) 562, 1185
BplI GAGNNNNNCTC 2 cut(s) 1053, 1085
Bpu14I TTCGAA 1 cut(s) 700
BpuEI CTTGAG 2 cut(s) 489, 1664
Bsa29I ATCGAT 2 cut(s) 84, 610
BsaBI GATNNNNATC 2 cut(s) 90, 1434
BsaHI GRCGYC 1 cut(s) 1066
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 3 cut(s) 475, 560, 1532
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 1516
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 1 cut(s) 1469
Bse8I GATNNNNATC 2 cut(s) 90, 1434
BseCI ATCGAT 2 cut(s) 84, 610
BseDI CCNNGG 3 cut(s) 475, 560, 1532
BseGI GGATG 1 cut(s) 959
BseJI GATNNNNATC 2 cut(s) 90, 1434
BseLI CCNNNNNNNGG 2 cut(s) 548, 1516
BseMII CTCAG 1 cut(s) 1135
BseNI ACTGG 1 cut(s) 1469
BseRI GAGGAG 2 cut(s) 333, 1074
BseYI CCCAGC 1 cut(s) 1512
BsgI GTGCAG 1 cut(s) 1670
BshFI GGCC 1 cut(s) 1329
BshNI GGYRCC 1 cut(s) 538
BshVI ATCGAT 2 cut(s) 84, 610
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 2 cut(s) 358, 542
BslFI GGGAC 2 cut(s) 723, 971
BslI CCNNNNNNNGG 2 cut(s) 548, 1516
BsmAI GTCTC 4 cut(s) 160, 281, 345, 1073
BsmBI CGTCTC 2 cut(s) 160, 1073
BsmFI GGGAC 2 cut(s) 723, 971
BsmI GAATGC 2 cut(s) 177, 431
BsnI GGCC 1 cut(s) 1329
Bso31I GGTCTC 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 700
Bsp1286I GDGCHC 1 cut(s) 505
Bsp1407I TGTACA 4 cut(s) 263, 448, 856, 1310
Bsp143I GATC 5 cut(s) 91, 763, 910, 1246, 1273
Bsp19I CCATGG 2 cut(s) 560, 1532
BspACI CCGC 4 cut(s) 545, 803, 1510, 1578
BspANI GGCC 1 cut(s) 1329
BspCNI CTCAG 1 cut(s) 1134
BspDI ATCGAT 2 cut(s) 84, 610
BspHI TCATGA 3 cut(s) 10, 124, 1039
BspLI GGNNCC 3 cut(s) 221, 540, 1521
BspPI GGATC 1 cut(s) 905
BspQI GCTCTTC 1 cut(s) 1278
BspT104I TTCGAA 1 cut(s) 700
BspT107I GGYRCC 1 cut(s) 538
BspTNI GGTCTC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 541
BsrGI TGTACA 4 cut(s) 263, 448, 856, 1310
BsrI ACTGG 1 cut(s) 1469
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 475, 560, 1532
BssMI GATC 5 cut(s) 91, 763, 910, 1246, 1273
BssNI GRCGYC 1 cut(s) 1066
BssT1I CCWWGG 3 cut(s) 475, 560, 1532
Bst4CI ACNGT 6 cut(s) 263, 339, 886, 1080, 1417, 1501
Bst6I CTCTTC 2 cut(s) 838, 1278
BstACI GRCGYC 1 cut(s) 1066
BstAUI TGTACA 4 cut(s) 263, 448, 856, 1310
BstBI TTCGAA 1 cut(s) 700
BstC8I GCNNGC 2 cut(s) 114, 737
BstDEI CTNAG 1 cut(s) 1121
BstDSI CCRYGG 2 cut(s) 560, 1532
BstEII GGTNACC 1 cut(s) 1388
BstF5I GGATG 1 cut(s) 959
BstHHI GCGC 4 cut(s) 133, 177, 1032, 1709
BstKTI GATC 5 cut(s) 94, 766, 913, 1249, 1276
BstMAI GTCTC 4 cut(s) 160, 281, 345, 1073
BstMBI GATC 5 cut(s) 91, 763, 910, 1246, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 1126, 1715
BstNSI RCATGY 3 cut(s) 116, 255, 999
BstPAI GACNNNNGTC 1 cut(s) 831
BstPI GGTNACC 1 cut(s) 1388
BstSFI CTRYAG 1 cut(s) 1721
BstV2I GAAGAC 2 cut(s) 562, 1185
BstXI CCANNNNNNTGG 1 cut(s) 482
Bsu15I ATCGAT 2 cut(s) 84, 610
BsuI GTATCC 1 cut(s) 933
BsuRI GGCC 1 cut(s) 1329
BsuTUI ATCGAT 2 cut(s) 84, 610
BtgI CCRYGG 2 cut(s) 560, 1532
BtsCI GGATG 1 cut(s) 959
BtsI GCAGTG 1 cut(s) 1311
BtsIMutI CAGTG 3 cut(s) 66, 1311, 1422
Cac8I GCNNGC 2 cut(s) 114, 737
CciI TCATGA 3 cut(s) 10, 124, 1039
CfoI GCGC 4 cut(s) 133, 177, 1032, 1709
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 6 cut(s) 220, 355, 485, 1328, 1337, 1625
ClaI ATCGAT 2 cut(s) 84, 610
CseI GACGC 1 cut(s) 1055
Csp6I GTAC 7 cut(s) 155, 264, 449, 539, 857, 1311, 1600
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
CviQI GTAC 7 cut(s) 155, 264, 449, 539, 857, 1311, 1600
DdeI CTNAG 1 cut(s) 1121
DpnI GATC 5 cut(s) 93, 765, 912, 1248, 1275
DpnII GATC 5 cut(s) 91, 763, 910, 1246, 1273
DriI GACNNNNNGTC 1 cut(s) 1636
Eam1104I CTCTTC 2 cut(s) 838, 1278
Eam1105I GACNNNNNGTC 1 cut(s) 1636
EarI CTCTTC 2 cut(s) 838, 1278
EciI GGCGGA 1 cut(s) 560
Eco130I CCWWGG 3 cut(s) 475, 560, 1532
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 5 cut(s) 220, 355, 485, 1337, 1625
Eco57I CTGAAG 3 cut(s) 90, 277, 587
Eco91I GGTNACC 1 cut(s) 1388
EcoO109I RGGNCCY 1 cut(s) 1625
EcoO65I GGTNACC 1 cut(s) 1388
EcoT14I CCWWGG 3 cut(s) 475, 560, 1532
EcoT22I ATGCAT 1 cut(s) 1435
ErhI CCWWGG 3 cut(s) 475, 560, 1532
Esp3I CGTCTC 2 cut(s) 160, 1073
FaqI GGGAC 2 cut(s) 723, 971
FauNDI CATATG 2 cut(s) 949, 1317
FokI GGATG 1 cut(s) 966
FspAI RTGCGCAY 1 cut(s) 1708
FspBI CTAG 1 cut(s) 195
FspI TGCGCA 2 cut(s) 1031, 1708
GlaI GCGC 4 cut(s) 132, 176, 1031, 1708
GsaI CCCAGC 1 cut(s) 1516
HaeIII GGCC 1 cut(s) 1329
HapII CCGG 2 cut(s) 358, 542
HgaI GACGC 1 cut(s) 1055
HhaI GCGC 4 cut(s) 133, 177, 1032, 1709
Hin1I GRCGYC 1 cut(s) 1066
Hin6I GCGC 4 cut(s) 131, 175, 1030, 1707
HinP1I GCGC 4 cut(s) 131, 175, 1030, 1707
HindIII AAGCTT 2 cut(s) 573, 1223
HinfI GANTC 4 cut(s) 607, 1109, 1181, 1321
HpaII CCGG 2 cut(s) 358, 542
HphI GGTGA 2 cut(s) 234, 833
Hpy166II GTNNAC 6 cut(s) 25, 449, 485, 1311, 1313, 1337
Hpy188I TCNGA 8 cut(s) 370, 398, 606, 619, 763, 1124, 1155, 1278
Hpy8I GTNNAC 6 cut(s) 25, 449, 485, 1311, 1313, 1337
Hpy99I CGWCG 1 cut(s) 771
HpyAV CCTTC 4 cut(s) 301, 304, 694, 768
HpyCH4III ACNGT 6 cut(s) 263, 339, 886, 1080, 1417, 1501
HpyCH4IV ACGT 5 cut(s) 21, 144, 423, 471, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 1126, 1715
HpyF3I CTNAG 1 cut(s) 1121
HpySE526I ACGT 5 cut(s) 21, 144, 423, 471, 715
Hsp92I GRCGYC 1 cut(s) 1066
HspAI GCGC 4 cut(s) 131, 175, 1030, 1707
KpnI GGTACC 1 cut(s) 542
Kzo9I GATC 5 cut(s) 91, 763, 910, 1246, 1273
LguI GCTCTTC 1 cut(s) 1278
LweI GCATC 5 cut(s) 800, 1017, 1291, 1420, 1681
MaeI CTAG 1 cut(s) 195
MaeII ACGT 5 cut(s) 21, 144, 423, 471, 715
MaeIII GTNAC 5 cut(s) 101, 1020, 1388, 1556, 1638
MalI GATC 5 cut(s) 93, 765, 912, 1248, 1275
MboI GATC 5 cut(s) 91, 763, 910, 1246, 1273
MboII GAAGA 6 cut(s) 221, 567, 855, 1190, 1295, 1439
MfeI CAATTG 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 1175
MmeI TCCRAC 2 cut(s) 880, 1680
Mph1103I ATGCAT 1 cut(s) 1435
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 5 cut(s) 468, 669, 1134, 1227, 1257
MslI CAYNNNNRTG 6 cut(s) 117, 186, 440, 456, 952, 1563
MspA1I CMGCKG 1 cut(s) 1512
MspI CCGG 2 cut(s) 358, 542
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 2 cut(s) 177, 431
MwoI GCNNNNNNNGC 2 cut(s) 1126, 1715
NcoI CCATGG 2 cut(s) 560, 1532
NdeI CATATG 2 cut(s) 949, 1317
NdeII GATC 5 cut(s) 91, 763, 910, 1246, 1273
NlaIV GGNNCC 3 cut(s) 221, 540, 1521
NmuCI GTSAC 3 cut(s) 101, 1556, 1638
NsbI TGCGCA 2 cut(s) 1031, 1708
NsiI ATGCAT 1 cut(s) 1435
NspI RCATGY 3 cut(s) 116, 255, 999
NspV TTCGAA 1 cut(s) 700
PaeI GCATGC 1 cut(s) 116
PagI TCATGA 3 cut(s) 10, 124, 1039
PciI ACATGT 1 cut(s) 995
PciSI GCTCTTC 1 cut(s) 1278
PcsI WCGNNNNNNNCGW 1 cut(s) 1459
PctI GAATGC 2 cut(s) 177, 431
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 3 cut(s) 607, 1109, 1321
PflFI GACNNNGTC 1 cut(s) 714
PleI GAGTC 1 cut(s) 1175
PpsI GAGTC 1 cut(s) 1175
PpuMI RGGWCCY 1 cut(s) 1625
PscI ACATGT 1 cut(s) 995
PshAI GACNNNNGTC 1 cut(s) 831
Psp1406I AACGTT 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 1625
PspEI GGTNACC 1 cut(s) 1388
PspFI CCCAGC 1 cut(s) 1512
PspN4I GGNNCC 3 cut(s) 221, 540, 1521
PspPI GGNCC 6 cut(s) 220, 355, 485, 1328, 1337, 1625
PspPPI RGGWCCY 1 cut(s) 1625
PsyI GACNNNGTC 1 cut(s) 714
RsaI GTAC 7 cut(s) 156, 265, 450, 540, 858, 1312, 1601
RsaNI GTAC 7 cut(s) 155, 264, 449, 539, 857, 1311, 1600
RseI CAYNNNNRTG 6 cut(s) 117, 186, 440, 456, 952, 1563
SapI GCTCTTC 1 cut(s) 1278
SaqAI TTAA 5 cut(s) 468, 669, 1134, 1227, 1257
Sau3AI GATC 5 cut(s) 91, 763, 910, 1246, 1273
Sau96I GGNCC 6 cut(s) 220, 355, 485, 1328, 1337, 1625
ScaI AGTACT 1 cut(s) 1601
SchI GAGTC 1 cut(s) 1175
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 5 cut(s) 800, 1017, 1291, 1420, 1681
SfcI CTRYAG 1 cut(s) 1721
SfuI TTCGAA 1 cut(s) 700
SinI GGWCC 5 cut(s) 220, 355, 485, 1337, 1625
SmiMI CAYNNNNRTG 6 cut(s) 117, 186, 440, 456, 952, 1563
SmlI CTYRAG 2 cut(s) 504, 1643
SmoI CTYRAG 2 cut(s) 504, 1643
SphI GCATGC 1 cut(s) 116
SsiI CCGC 4 cut(s) 545, 803, 1510, 1578
SspI AATATT 2 cut(s) 319, 406
SspMI CTAG 1 cut(s) 195
StyI CCWWGG 3 cut(s) 475, 560, 1532
TaaI ACNGT 6 cut(s) 263, 339, 886, 1080, 1417, 1501
TaiI ACGT 5 cut(s) 24, 147, 426, 474, 718
TaqI TCGA 9 cut(s) 84, 151, 283, 610, 700, 1291, 1486, 1569, 1668
TatI WGTACW 5 cut(s) 263, 448, 856, 1310, 1599
TfiI GAWTC 3 cut(s) 607, 1109, 1321
Tru1I TTAA 5 cut(s) 468, 669, 1134, 1227, 1257
Tru9I TTAA 5 cut(s) 468, 669, 1134, 1227, 1257
TscAI CASTG 3 cut(s) 73, 1311, 1422
TseFI GTSAC 3 cut(s) 101, 1556, 1638
Tsp45I GTSAC 3 cut(s) 101, 1556, 1638
TspGWI ACGGA 1 cut(s) 996
TspRI CASTG 3 cut(s) 73, 1311, 1422
Tth111I GACNNNGTC 1 cut(s) 714
VpaK11BI GGWCC 5 cut(s) 220, 355, 485, 1337, 1625
XapI RAATTY 4 cut(s) 392, 654, 1148, 1408
XceI RCATGY 3 cut(s) 116, 255, 999
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 1601
Zsp2I ATGCAT 1 cut(s) 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.