G-quadruplex DNA unwinding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 2 - 31 | 1.7e-08 | PPR repeat family |
| PPR_long | PF17177 | 4 - 93 | 4e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 7 - 52 | 6.6e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 14 - 47 | 1.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 22 - 67 | 7.9e-19 | PPR repeat family |
| PPR | PF01535 | 22 - 51 | 4.5e-09 | PPR repeat |
| PPR_3 | PF13812 | 41 - 97 | 6.5e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 50 - 79 | 6.8e-10 | PPR repeat |
| PPR_2 | PF13041 | 54 - 94 | 2.5e-08 | PPR repeat family |
| PPR | PF01535 | 56 - 86 | 7.4e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 59 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 46, 78, 299, 331 |
| AluBI | AGCT | 1 cut(s) | 19 |
| AluI | AGCT | 1 cut(s) | 19 |
| AsuC2I | CCSGG | 1 cut(s) | 60 |
| BbsI | GAAGAC | 1 cut(s) | 318 |
| BccI | CCATC | 3 cut(s) | 100, 130, 329 |
| BcnI | CCSGG | 1 cut(s) | 60 |
| Bme1390I | CCNGG | 1 cut(s) | 60 |
| BmrFI | CCNGG | 1 cut(s) | 60 |
| BpiI | GAAGAC | 1 cut(s) | 318 |
| BpuMI | CCSGG | 1 cut(s) | 60 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 28, 58, 136, 166 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 59 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BseRI | GAGGAG | 5 cut(s) | 49, 125, 157, 232, 335 |
| BsiSI | CCGG | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BspHI | TCATGA | 1 cut(s) | 298 |
| BssNAI | GTATAC | 1 cut(s) | 69 |
| Bst1107I | GTATAC | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 2 cut(s) | 95, 363 |
| BstNSI | RCATGY | 1 cut(s) | 365 |
| BstSCI | CCNGG | 1 cut(s) | 58 |
| BstV2I | GAAGAC | 1 cut(s) | 318 |
| BstZ17I | GTATAC | 1 cut(s) | 69 |
| BtgZI | GCGATG | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 2 cut(s) | 95, 363 |
| CciI | TCATGA | 1 cut(s) | 298 |
| CviAII | CATG | 2 cut(s) | 299, 362 |
| CviJI | RGCY | 3 cut(s) | 19, 52, 296 |
| CviKI_1 | RGCY | 3 cut(s) | 19, 52, 296 |
| FaeI | CATG | 2 cut(s) | 302, 365 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 299, 331 |
| FatI | CATG | 2 cut(s) | 298, 361 |
| FblI | GTMKAC | 1 cut(s) | 68 |
| HapII | CCGG | 1 cut(s) | 59 |
| Hin1II | CATG | 2 cut(s) | 302, 365 |
| HinfI | GANTC | 2 cut(s) | 79, 265 |
| HpaII | CCGG | 1 cut(s) | 59 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 258 |
| Hpy188I | TCNGA | 1 cut(s) | 270 |
| Hpy188III | TCNNGA | 1 cut(s) | 299 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 258 |
| HpyAV | CCTTC | 2 cut(s) | 19, 301 |
| HpyCH4V | TGCA | 2 cut(s) | 283, 361 |
| Hsp92II | CATG | 2 cut(s) | 302, 365 |
| LpnPI | CCDG | 4 cut(s) | 68, 72, 79, 83 |
| MaeIII | GTNAC | 1 cut(s) | 166 |
| MboII | GAAGA | 5 cut(s) | 115, 220, 316, 323, 362 |
| MluCI | AATT | 1 cut(s) | 330 |
| MlyI | GAGTC | 1 cut(s) | 274 |
| MnlI | CCTC | 9 cut(s) | 27, 103, 106, 114, 135, 148, 210, 313, 340 |
| MspI | CCGG | 1 cut(s) | 59 |
| MspR9I | CCNGG | 1 cut(s) | 60 |
| NciI | CCSGG | 1 cut(s) | 60 |
| NlaIII | CATG | 2 cut(s) | 302, 365 |
| NmeAIII | GCCGAG | 1 cut(s) | 288 |
| NmuCI | GTSAC | 1 cut(s) | 166 |
| NspI | RCATGY | 1 cut(s) | 365 |
| PaeI | GCATGC | 1 cut(s) | 365 |
| PagI | TCATGA | 1 cut(s) | 298 |
| PfeI | GAWTC | 1 cut(s) | 79 |
| PleI | GAGTC | 1 cut(s) | 273 |
| PpsI | GAGTC | 1 cut(s) | 273 |
| SchI | GAGTC | 1 cut(s) | 274 |
| ScrFI | CCNGG | 1 cut(s) | 60 |
| SetI | ASST | 2 cut(s) | 21, 159 |
| SgeI | CNNG | 9 cut(s) | 71, 72, 95, 106, 110, 276, 292, 311, 328 |
| SphI | GCATGC | 1 cut(s) | 365 |
| Sse9I | AATT | 1 cut(s) | 330 |
| StyD4I | CCNGG | 1 cut(s) | 58 |
| TasI | AATT | 1 cut(s) | 330 |
| TfiI | GAWTC | 1 cut(s) | 79 |
| TseFI | GTSAC | 1 cut(s) | 166 |
| Tsp45I | GTSAC | 1 cut(s) | 166 |
| XceI | RCATGY | 1 cut(s) | 365 |
| XmiI | GTMKAC | 1 cut(s) | 68 |