Rorug05G0101300

G-quadruplex DNA unwinding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000080
Physical Location & Seq
Forward (+)
8912770 .. 8915474
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0101300.1

Sequence Viewer

Length: 1407 bp
ATGCAGGCCATTCAGTCCTCCACGCTCCGACCCGCCCCGCTCGACCCGCTCCGCAAACGGACCCACTTCCCCAACCTCACTCCCAAACCCGCCTGCAGACGCGTCTCCTTCGTCTCCGCCTCCTCCTCCTCCGTCTCCGCCCCCACCCGCGAGAAGGACCCCAAGAAGCGCGTGGTCATCACCGGCCTCGGCCTCGTCTCCGTCTTCGGCAACGACGTCAACACCTACTACGACAAGCTCCTCGCCGGAGAGAGCGGCGTCGGACCCATCGACCGCTTCGACGCCTCCAAGTTCCCCACCCGGTTCGGCGGCCAGATCCGCGGCTTCACCTCCGAGGGCTACATTGACGGCAAGAACGATCGCCGCCTCGACGATTGCCTCCGCTACGCCATTGTTGCCGGCAAGAAGGCTCTAGAAGATGCTGATCTCGGCGCCGATAACCGCCCTAAGCTTGATAAGTCGCGGGCTGGTGTGCTGGTTGGATCAGGGATGGGTGGTCTTACTGTGTTTTCTGATGGTGTTCATGCACTGATAGATAAAGGTCACAGGAAAATTACCCCGTTTTTCATTCCCTATGCTATTACAAACATGGGATCTGCTTTGCTTGGAATTGATTTGGGCTTTATGGGGCCGAATTATTCAATCTCGACGGCTTGTGCTACTTCAAATTACTGTTTCTATGCTGCGGCGAATCACATTCGTCGGGGTGAAGCTGATTTGATGATTGCTGGTGGGACTGAAGCTGCCTTGATTCCCATTGGGCTTGGGGGGTTTGTTGCATGCAGGGCATTGTCTCAGAGAAATGATGATCCGAAAACTGCTTCTAGGCCGTGGGACAAAGATAGAGATGGCTTTGTTATGGGTGAAGGTGCTGGAATATTGGTAATGGAGAGCTTGGAACATGCGATGAAACGAGGTGCACCTATTATTGCCGAGTACTTGGGAGGTGCTATCAACTGTGATGCGTATCATATGACTGATCCAAGAGGCGATGGACTTGGTGTATCTACATGCATAGAGAGAAGCCTTGAAGATGCTGGTGTTTCACCTGAAGAGGTTAACTACATCAATGCCCATGCAACTTCCACTCTAGCGGGTGACCTGGCTGAGGTTAATGCTATAAAAAAGGTGTTCAAGAACACTAAAGAGATAAAGATCAATGCTACTAAGTCTATGATAGGTCACTGCCTCGGTGCTTCTGGGGGTTTGGAAGCTATTGCTACAGTGAAAGCCATACAAACAGGATGGCTACATCCTTCCATAAACCAATTTAATCCAGAACCCTCAGTCGAGTTTGACACTGTTGCAAATGTAAAGCAGCAGCATGAAGTGAATGTTGCCATATCAAATTCGTTTGGATTCGGAGGACATAACTCTGTCGTCGCCTTTTCTGCATTCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

468

Amino Acids

49.86

Weight (kDa)

8.04

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 56 - 302 3e-55 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 311 - 422 1.3e-34 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 431
AccBSI CCGCTC 3 cut(s) 40, 49, 255
AccII CGCG 5 cut(s) 102, 150, 171, 321, 463
AclWI GGATC 5 cut(s) 310, 490, 601, 803, 974
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 1348
AcuI CTGAAG 2 cut(s) 759, 1071
AcyI GRCGYC 4 cut(s) 216, 258, 282, 432
AfaI GTAC 1 cut(s) 938
AfiI CCNNNNNNNGG 2 cut(s) 154, 1108
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 5 cut(s) 642, 666, 1031, 1135, 1399
AjnI CCWGG 1 cut(s) 1101
AluBI AGCT 6 cut(s) 238, 451, 713, 743, 894, 1214
AluI AGCT 6 cut(s) 238, 451, 713, 743, 894, 1214
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 5 cut(s) 109, 118, 139, 202, 798
Alw44I GTGCAC 1 cut(s) 918
AlwI GGATC 5 cut(s) 310, 490, 601, 803, 974
AoxI GGCC 6 cut(s) 6, 184, 190, 310, 629, 827
ApaLI GTGCAC 1 cut(s) 918
ApeKI GCWGC 4 cut(s) 683, 743, 1318, 1321
ApoI RAATTY 1 cut(s) 1348
AspLEI GCGC 2 cut(s) 171, 434
AspS9I GGNCC 4 cut(s) 60, 157, 263, 629
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 6 cut(s) 172, 319, 719, 875, 1038, 1109
AvaII GGWCC 3 cut(s) 60, 157, 263
BaeGI GKGCMC 1 cut(s) 922
BanI GGYRCC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 922
BbvCI CCTCAGC 1 cut(s) 1107
BbvI GCAGC 4 cut(s) 670, 730, 1330, 1333
BccI CCATC 6 cut(s) 275, 484, 509, 842, 986, 1239
BceAI ACGGC 3 cut(s) 364, 666, 814
BciT130I CCWGG 1 cut(s) 1103
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 5 cut(s) 109, 118, 139, 202, 798
BfaI CTAG 3 cut(s) 413, 825, 1091
BfmI CTRYAG 2 cut(s) 94, 1221
BfoI RGCGCY 1 cut(s) 435
BisI GCNGC 9 cut(s) 256, 310, 322, 364, 684, 687, 744, 1319, 1322
BlsI GCNGC 9 cut(s) 257, 311, 323, 365, 685, 688, 745, 1320, 1323
BmcAI AGTACT 1 cut(s) 938
Bme1390I CCNGG 2 cut(s) 301, 1103
Bme18I GGWCC 3 cut(s) 60, 157, 263
BmgT120I GGNCC 4 cut(s) 60, 157, 263, 629
BmiI GGNNCC 5 cut(s) 62, 159, 265, 433, 630
BmrFI CCNGG 2 cut(s) 301, 1103
BmsI GCATC 3 cut(s) 409, 952, 1024
BpiI GAAGAC 1 cut(s) 196
Bpu10I CCTNAGC 2 cut(s) 447, 1107
BpuMI CCSGG 1 cut(s) 301
BsaBI GATNNNNATC 3 cut(s) 423, 966, 1154
BsaHI GRCGYC 4 cut(s) 216, 258, 282, 432
BsaJI CCNNGG 5 cut(s) 187, 319, 333, 830, 1189
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 1108
Bse118I RCCGGY 2 cut(s) 182, 398
Bse8I GATNNNNATC 3 cut(s) 423, 966, 1154
BseBI CCWGG 1 cut(s) 1103
BseDI CCNNGG 5 cut(s) 187, 319, 333, 830, 1189
BseGI GGATG 3 cut(s) 495, 1250, 1252
BseJI GATNNNNATC 3 cut(s) 423, 966, 1154
BseLI CCNNNNNNNGG 2 cut(s) 154, 1108
BseMII CTCAG 3 cut(s) 809, 1098, 1299
BseRI GAGGAG 4 cut(s) 112, 115, 118, 230
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 4 cut(s) 670, 730, 1330, 1333
Bsh1236I CGCG 5 cut(s) 102, 150, 171, 321, 463
Bsh1285I CGRYCG 2 cut(s) 274, 361
BshFI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
BshNI GGYRCC 1 cut(s) 431
BsiEI CGRYCG 2 cut(s) 274, 361
BsiHKAI GWGCWC 1 cut(s) 922
BsiSI CCGG 4 cut(s) 183, 246, 301, 399
BslFI GGGAC 2 cut(s) 748, 848
BslI CCNNNNNNNGG 2 cut(s) 154, 1108
BsmAI GTCTC 5 cut(s) 109, 118, 139, 202, 798
BsmBI CGTCTC 4 cut(s) 109, 118, 139, 202
BsmFI GGGAC 2 cut(s) 748, 848
BsmI GAATGC 1 cut(s) 1394
BsnI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
Bsp1286I GDGCHC 1 cut(s) 922
Bsp143I GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
BspANI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
BspCNI CTCAG 3 cut(s) 808, 1099, 1298
BspFNI CGCG 5 cut(s) 102, 150, 171, 321, 463
BspLI GGNNCC 5 cut(s) 62, 159, 265, 433, 630
BspMAI CTGCAG 1 cut(s) 98
BspPI GGATC 5 cut(s) 310, 490, 601, 803, 974
BspT107I GGYRCC 1 cut(s) 431
BsrBI CCGCTC 3 cut(s) 40, 49, 255
BsrFI RCCGGY 2 cut(s) 182, 398
BssAI RCCGGY 2 cut(s) 182, 398
BssECI CCNNGG 5 cut(s) 187, 319, 333, 830, 1189
BssMI GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
BssNI GRCGYC 4 cut(s) 216, 258, 282, 432
Bst2UI CCWGG 1 cut(s) 1103
Bst4CI ACNGT 5 cut(s) 505, 674, 959, 1225, 1303
Bst6I CTCTTC 1 cut(s) 1047
BstACI GRCGYC 4 cut(s) 216, 258, 282, 432
BstC8I GCNNGC 5 cut(s) 6, 94, 400, 465, 781
BstDEI CTNAG 5 cut(s) 447, 795, 1107, 1167, 1285
BstDSI CCRYGG 2 cut(s) 319, 830
BstEII GGTNACC 1 cut(s) 1097
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 3 cut(s) 495, 1250, 1252
BstFNI CGCG 5 cut(s) 102, 150, 171, 321, 463
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 2 cut(s) 171, 434
BstKTI GATC 8 cut(s) 318, 361, 427, 485, 596, 811, 982, 1158
BstMAI GTCTC 5 cut(s) 109, 118, 139, 202, 798
BstMBI GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
BstMCI CGRYCG 2 cut(s) 274, 361
BstMWI GCNNNNNNNGC 5 cut(s) 46, 318, 395, 785, 1391
BstNI CCWGG 1 cut(s) 1103
BstNSI RCATGY 3 cut(s) 783, 905, 1014
BstPI GGTNACC 1 cut(s) 1097
BstSCI CCNGG 2 cut(s) 299, 1101
BstSFI CTRYAG 2 cut(s) 94, 1221
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 5 cut(s) 102, 150, 171, 321, 463
BstV1I GCAGC 4 cut(s) 670, 730, 1330, 1333
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 315, 593
BstYI RGATCY 2 cut(s) 315, 593
BsuRI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
BtgI CCRYGG 2 cut(s) 319, 830
BtgZI GCGATG 2 cut(s) 920, 1005
BtsCI GGATG 3 cut(s) 495, 1250, 1252
BtsI GCAGTG 1 cut(s) 1183
BtsIMutI CAGTG 4 cut(s) 527, 1183, 1230, 1299
Cac8I GCNNGC 5 cut(s) 6, 94, 400, 465, 781
CfoI GCGC 2 cut(s) 171, 434
Cfr10I RCCGGY 2 cut(s) 182, 398
Cfr13I GGNCC 4 cut(s) 60, 157, 263, 629
Cfr42I CCGCGG 1 cut(s) 322
CseI GACGC 4 cut(s) 91, 108, 247, 290
Csp6I GTAC 1 cut(s) 937
CviAII CATG 7 cut(s) 524, 589, 780, 902, 1011, 1076, 1325
CviQI GTAC 1 cut(s) 937
DdeI CTNAG 5 cut(s) 447, 795, 1107, 1167, 1285
DinI GGCGCC 1 cut(s) 433
DpnI GATC 8 cut(s) 317, 360, 426, 484, 595, 810, 981, 1157
DpnII GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 1047
EarI CTCTTC 1 cut(s) 1047
EciI GGCGGA 2 cut(s) 106, 127
Eco47I GGWCC 3 cut(s) 60, 157, 263
Eco57I CTGAAG 2 cut(s) 759, 1071
Eco91I GGTNACC 1 cut(s) 1097
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoO109I RGGNCCY 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 1097
EcoRII CCWGG 1 cut(s) 1101
EcoT22I ATGCAT 1 cut(s) 1016
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
Esp3I CGTCTC 4 cut(s) 109, 118, 139, 202
FaeI CATG 7 cut(s) 527, 592, 783, 905, 1014, 1079, 1328
FaqI GGGAC 2 cut(s) 748, 848
FatI CATG 7 cut(s) 523, 588, 779, 901, 1010, 1075, 1324
FauI CCCGC 7 cut(s) 40, 45, 54, 97, 155, 456, 1087
FauNDI CATATG 1 cut(s) 972
Fnu4HI GCNGC 9 cut(s) 256, 310, 322, 364, 684, 687, 744, 1319, 1322
FokI GGATG 3 cut(s) 502, 1239, 1257
Fsp4HI GCNGC 9 cut(s) 256, 310, 322, 364, 684, 687, 744, 1319, 1322
FspBI CTAG 3 cut(s) 413, 825, 1091
GlaI GCGC 2 cut(s) 170, 433
GluI GCNGC 9 cut(s) 256, 310, 322, 364, 684, 687, 744, 1319, 1322
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
HapII CCGG 4 cut(s) 183, 246, 301, 399
HgaI GACGC 4 cut(s) 91, 108, 247, 290
HhaI GCGC 2 cut(s) 171, 434
Hin1I GRCGYC 4 cut(s) 216, 258, 282, 432
Hin1II CATG 7 cut(s) 527, 592, 783, 905, 1014, 1079, 1328
Hin6I GCGC 2 cut(s) 169, 432
HinP1I GCGC 2 cut(s) 169, 432
HincII GTYRAC 2 cut(s) 220, 1060
HindII GTYRAC 2 cut(s) 220, 1060
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 691, 751, 1359
HpaI GTTAAC 1 cut(s) 1060
HpaII CCGG 4 cut(s) 183, 246, 301, 399
HphI GGTGA 6 cut(s) 172, 319, 719, 875, 1038, 1109
Hpy166II GTNNAC 3 cut(s) 220, 920, 1060
Hpy188I TCNGA 7 cut(s) 29, 263, 334, 514, 798, 813, 1364
Hpy188III TCNNGA 4 cut(s) 413, 646, 1135, 1277
Hpy8I GTNNAC 3 cut(s) 220, 920, 1060
Hpy99I CGWCG 7 cut(s) 218, 263, 284, 374, 652, 705, 1385
HpyAV CCTTC 5 cut(s) 118, 148, 400, 860, 1266
HpyCH4III ACNGT 5 cut(s) 505, 674, 959, 1225, 1303
HpyCH4IV ACGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 318, 395, 785, 1391
HpyF3I CTNAG 5 cut(s) 447, 795, 1107, 1167, 1285
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 4 cut(s) 216, 258, 282, 432
Hsp92II CATG 7 cut(s) 527, 592, 783, 905, 1014, 1079, 1328
HspAI GCGC 2 cut(s) 169, 432
KasI GGCGCC 1 cut(s) 431
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
KspAI GTTAAC 1 cut(s) 1060
KspI CCGCGG 1 cut(s) 322
Kzo9I GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
LmnI GCTCC 3 cut(s) 30, 54, 243
Lsp1109I GCAGC 4 cut(s) 670, 730, 1330, 1333
LweI GCATC 3 cut(s) 409, 952, 1024
MaeI CTAG 3 cut(s) 413, 825, 1091
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 542, 1097, 1181
MalI GATC 8 cut(s) 317, 360, 426, 484, 595, 810, 981, 1157
MbiI CCGCTC 3 cut(s) 40, 49, 255
MboI GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
MboII GAAGA 4 cut(s) 196, 428, 1043, 1064
MflI RGATCY 2 cut(s) 315, 593
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 6 cut(s) 552, 609, 634, 667, 1268, 1348
MluI ACGCGT 1 cut(s) 100
Mly113I GGCGCC 1 cut(s) 432
MmeI TCCRAC 3 cut(s) 52, 241, 460
Mph1103I ATGCAT 1 cut(s) 1016
MroNI GCCGGC 1 cut(s) 398
MseI TTAA 3 cut(s) 1059, 1113, 1272
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 4 cut(s) 183, 246, 301, 399
MspR9I CCNGG 2 cut(s) 301, 1103
Mva1269I GAATGC 1 cut(s) 1394
MvaI CCWGG 1 cut(s) 1103
MvnI CGCG 5 cut(s) 102, 150, 171, 321, 463
MwoI GCNNNNNNNGC 5 cut(s) 46, 318, 395, 785, 1391
NaeI GCCGGC 1 cut(s) 400
NarI GGCGCC 1 cut(s) 432
NciI CCSGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 972
NdeII GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 7 cut(s) 527, 592, 783, 905, 1014, 1079, 1328
NlaIV GGNNCC 5 cut(s) 62, 159, 265, 433, 630
NmeAIII GCCGAG 3 cut(s) 168, 408, 958
NmuCI GTSAC 3 cut(s) 542, 1097, 1181
NsiI ATGCAT 1 cut(s) 1016
NspI RCATGY 3 cut(s) 783, 905, 1014
PaeI GCATGC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 4 cut(s) 213, 267, 276, 354
PctI GAATGC 1 cut(s) 1394
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 691, 751, 1359
PkrI GCNGC 9 cut(s) 257, 311, 323, 365, 685, 688, 745, 1320, 1323
Ple19I CGATCG 1 cut(s) 361
PluTI GGCGCC 1 cut(s) 435
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 1101
PspEI GGTNACC 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 1101
PspN4I GGNNCC 5 cut(s) 62, 159, 265, 433, 630
PspPI GGNCC 4 cut(s) 60, 157, 263, 629
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 315, 593
PvuI CGATCG 1 cut(s) 361
RsaI GTAC 1 cut(s) 938
RsaNI GTAC 1 cut(s) 937
SacII CCGCGG 1 cut(s) 322
SaqAI TTAA 3 cut(s) 1059, 1113, 1272
SatI GCNGC 9 cut(s) 256, 310, 322, 364, 684, 687, 744, 1319, 1322
Sau3AI GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
Sau96I GGNCC 4 cut(s) 60, 157, 263, 629
ScaI AGTACT 1 cut(s) 938
ScrFI CCNGG 2 cut(s) 301, 1103
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 3 cut(s) 409, 952, 1024
SfcI CTRYAG 2 cut(s) 94, 1221
SfoI GGCGCC 1 cut(s) 433
Sfr303I CCGCGG 1 cut(s) 322
SgrBI CCGCGG 1 cut(s) 322
SinI GGWCC 3 cut(s) 60, 157, 263
SphI GCATGC 1 cut(s) 783
Sse9I AATT 6 cut(s) 552, 609, 634, 667, 1268, 1348
SspDI GGCGCC 1 cut(s) 431
SspI AATATT 1 cut(s) 879
SspMI CTAG 3 cut(s) 413, 825, 1091
StyD4I CCNGG 2 cut(s) 299, 1101
TaaI ACNGT 5 cut(s) 505, 674, 959, 1225, 1303
TaiI ACGT 1 cut(s) 219
TaqI TCGA 6 cut(s) 42, 270, 279, 369, 647, 1290
TasI AATT 6 cut(s) 552, 609, 634, 667, 1268, 1348
TatI WGTACW 1 cut(s) 936
TauI GCSGC 5 cut(s) 258, 312, 324, 366, 689
TfiI GAWTC 3 cut(s) 691, 751, 1359
Tru1I TTAA 3 cut(s) 1059, 1113, 1272
Tru9I TTAA 3 cut(s) 1059, 1113, 1272
TscAI CASTG 4 cut(s) 534, 1190, 1230, 1306
TseFI GTSAC 3 cut(s) 542, 1097, 1181
TseI GCWGC 4 cut(s) 683, 743, 1318, 1321
Tsp45I GTSAC 3 cut(s) 542, 1097, 1181
TspDTI ATGAA 4 cut(s) 512, 556, 923, 1341
TspGWI ACGGA 3 cut(s) 73, 121, 190
TspRI CASTG 4 cut(s) 534, 1190, 1230, 1306
VneI GTGCAC 1 cut(s) 918
VpaK11BI GGWCC 3 cut(s) 60, 157, 263
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 1 cut(s) 1348
XbaI TCTAGA 1 cut(s) 412
XceI RCATGY 3 cut(s) 783, 905, 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 3 cut(s) 413, 825, 1091
ZraI GACGTC 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 938
Zsp2I ATGCAT 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.