Rw3G027780

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000080
Physical Location & Seq
Reverse (-)
40153824 .. 40155332
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027780.1

Sequence Viewer

Length: 1197 bp
ATGCCATCAACTTTGAGGAGATTATTCGTCACAATTTTGGTTTACAATGAGCCAATCGGTGTCCGAACATTGTGGGATGAATTTTTTCCTTTTATGGTGGAAGATTATCCTTCATTTGGTGATATTGCAAACCGAAACAGGCTCTTACAAGATTTAAATGCAGTACTTGAACAATTTAACGGGAACATTAGAGATTTTGACCTGCCTAAAATGACAAGGGAGCCAAAAGAAAATTCAAGAATGCCAAGGTGTATTGAAGACGAACTTTCCGTACATATCTCTCAAGAATACATTGATGCAATTGACCGCCTTAATGAGGACCAAAGGATCGCCTTTAACACTATCATGGATGCAGTTCAGAGAAAAAGAAGTGCATTATTTTTTGTTGATGGTCCTGGTGGAACTGGAAAGACATATTTATACCATGCATTCCTAGAAAACTTACGGAGAACGAATCATATAGTCTTAGCCACAGCATCATCTGGAATAGCTACAAATATACTGCCCGGCGGGAGGACAGCTCACTCTAGATTTAAGATTCCACTCAATGTAGATGCGTCATTTATGTGTTCCATAAAGTTTCTTCTTCGTGTTGGCGATGGGAGTGAACAAGTCATCAATGACGAAATGATAAGATTACCGAAATGCATGGTGGTTCCATGGGAAAGAGACCAATCTATCAATCTAATTATTGATGAAGTTTTCCCCAATTTGGGTGATCATGTAAATGATGCAAGATACATGGTGGACAGAGCATTGATTACTCCTATAAATGACGATGTGGACGTGTTGAATGAAAAGATAATCAATAAGTTTCCAGGTGAAGAAATTACATTGTACTCATTTGACTCTGTTGAAGATGACATCAAAAATTTGTACCAACCAGAGTTTCTAAACTCAATAACCGCAGGTGGGCTGCCACCCCACAAGTTAACTTTGAAAGTAGGTGCTCCAATCATGCTTTTGAGGAATAATGACCCTAAATCGGGATTGTGTAACGGTAGTAGATTGTTGTGCCGTGGTTCATACCAAAATCTGATTGATGCTGAGATACTAACAGGACAGTTTACTGGGACTAGAGTTTTCCTACCGAGAATTCCTTTGAAAAGTGTAGAAAATGCTGGGCTACCATTTCAACTAACAAGAAAGCAATTTCCAGTCAAACTGAGCTTCTGTTTGACCATAAACAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

398

Amino Acids

45.18

Weight (kDa)

5.8

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIF1 PF05970 104 - 193 9.8e-31 PIF1-like helicase
Pif1_2B_dom PF21530 296 - 338 2.8e-19 DNA helicase Pif1, 2B domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 899
Acc36I ACCTGC 2 cut(s) 210, 899
AciI CCGC 3 cut(s) 307, 510, 906
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 4 cut(s) 80, 232, 871, 1095
AfaI GTAC 4 cut(s) 165, 273, 839, 878
AfiI CCNNNNNNNGG 8 cut(s) 116, 316, 513, 712, 713, 912, 985, 986
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 8 cut(s) 170, 237, 257, 793, 857, 940, 1105, 1136
AjiI CACGTC 1 cut(s) 787
AjnI CCWGG 2 cut(s) 394, 817
AjuI GAANNNNNNNTTGG 4 cut(s) 217, 249, 873, 905
AluBI AGCT 3 cut(s) 491, 521, 1170
AluI AGCT 3 cut(s) 491, 521, 1170
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 1 cut(s) 663
AlwI GGATC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 916
ApoI RAATTY 4 cut(s) 80, 232, 871, 1095
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 319, 392
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 3 cut(s) 131, 728, 833
AvaII GGWCC 2 cut(s) 319, 392
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 1 cut(s) 903
BccI CCATC 3 cut(s) 13, 383, 593
BceAI ACGGC 1 cut(s) 1002
BciT130I CCWGG 2 cut(s) 396, 819
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 3 cut(s) 434, 528, 1077
BfuAI ACCTGC 2 cut(s) 210, 899
BisI GCNGC 1 cut(s) 917
BlsI GCNGC 1 cut(s) 918
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 3 cut(s) 396, 507, 819
Bme18I GGWCC 2 cut(s) 319, 392
BmgBI CACGTC 1 cut(s) 787
BmgT120I GGNCC 2 cut(s) 319, 392
BmiI GGNNCC 2 cut(s) 222, 657
BmrFI CCNGG 3 cut(s) 396, 507, 819
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 6 cut(s) 286, 340, 485, 544, 721, 1033
BmuI ACTGGG 1 cut(s) 1080
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 505, 537
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 3 cut(s) 245, 659, 1018
Bsc4I CCNNNNNNNGG 8 cut(s) 116, 316, 513, 712, 713, 912, 985, 986
Bse1I ACTGG 3 cut(s) 409, 1075, 1157
BseBI CCWGG 2 cut(s) 396, 819
BseDI CCNNGG 3 cut(s) 245, 659, 1018
BseGI GGATG 2 cut(s) 82, 355
BseLI CCNNNNNNNGG 8 cut(s) 116, 316, 513, 712, 713, 912, 985, 986
BseMII CTCAG 2 cut(s) 1038, 1157
BseNI ACTGG 3 cut(s) 409, 1075, 1157
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 903
BseYI CCCAGC 1 cut(s) 1121
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 1 cut(s) 507
BslFI GGGAC 1 cut(s) 1087
BslI CCNNNNNNNGG 8 cut(s) 116, 316, 513, 712, 713, 912, 985, 986
BsmAI GTCTC 1 cut(s) 663
BsmFI GGGAC 1 cut(s) 1087
BsmI GAATGC 2 cut(s) 246, 428
Bso31I GGTCTC 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 952
Bsp143I GATC 2 cut(s) 327, 718
Bsp19I CCATGG 1 cut(s) 659
BspACI CCGC 3 cut(s) 307, 510, 906
BspCNI CTCAG 2 cut(s) 1039, 1158
BspLI GGNNCC 2 cut(s) 222, 657
BspMI ACCTGC 2 cut(s) 210, 899
BspPI GGATC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 663
BsrI ACTGG 3 cut(s) 409, 1075, 1157
BssECI CCNNGG 3 cut(s) 245, 659, 1018
BssMI GATC 2 cut(s) 327, 718
BssT1I CCWWGG 2 cut(s) 245, 659
Bst2UI CCWGG 2 cut(s) 396, 819
Bst4CI ACNGT 2 cut(s) 1001, 1065
BstDEI CTNAG 3 cut(s) 466, 1047, 1166
BstDSI CCRYGG 2 cut(s) 659, 1018
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 82, 355
BstKTI GATC 2 cut(s) 330, 721
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 327, 718
BstNI CCWGG 2 cut(s) 396, 819
BstSCI CCNGG 3 cut(s) 394, 505, 817
BstV1I GCAGC 1 cut(s) 903
BstV2I GAAGAC 1 cut(s) 264
BtgI CCRYGG 2 cut(s) 659, 1018
BtgZI GCGATG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 787
BtsCI GGATG 2 cut(s) 82, 355
BveI ACCTGC 2 cut(s) 210, 899
Cfr13I GGNCC 2 cut(s) 319, 392
CseI GACGC 1 cut(s) 546
Csp6I GTAC 4 cut(s) 164, 272, 838, 877
CviAII CATG 7 cut(s) 346, 425, 649, 660, 722, 742, 958
CviJI RGCY 9 cut(s) 52, 142, 223, 470, 491, 521, 916, 1126, 1170
CviKI_1 RGCY 9 cut(s) 52, 142, 223, 470, 491, 521, 916, 1126, 1170
CviQI GTAC 4 cut(s) 164, 272, 838, 877
DdeI CTNAG 3 cut(s) 466, 1047, 1166
DpnI GATC 2 cut(s) 329, 720
DpnII GATC 2 cut(s) 327, 718
DraI TTTAAA 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 245, 659
Eco31I GGTCTC 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 319, 392
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 1095
EcoRII CCWGG 2 cut(s) 394, 817
EcoT14I CCWWGG 2 cut(s) 245, 659
EcoT22I ATGCAT 2 cut(s) 430, 650
ErhI CCWWGG 2 cut(s) 245, 659
FaeI CATG 7 cut(s) 349, 428, 652, 663, 725, 745, 961
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 1087
FatI CATG 7 cut(s) 345, 424, 648, 659, 721, 741, 957
FauI CCCGC 1 cut(s) 503
FbaI TGATCA 1 cut(s) 718
Fnu4HI GCNGC 1 cut(s) 917
FokI GGATG 2 cut(s) 89, 362
Fsp4HI GCNGC 1 cut(s) 917
FspBI CTAG 3 cut(s) 434, 528, 1077
GluI GCNGC 1 cut(s) 917
GsaI CCCAGC 1 cut(s) 1125
HapII CCGG 1 cut(s) 507
HgaI GACGC 1 cut(s) 546
Hin1II CATG 7 cut(s) 349, 428, 652, 663, 725, 745, 961
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 3 cut(s) 454, 538, 848
HpaI GTTAAC 1 cut(s) 933
HpaII CCGG 1 cut(s) 507
HphI GGTGA 3 cut(s) 131, 728, 833
Hpy166II GTNNAC 6 cut(s) 43, 608, 748, 784, 933, 1068
Hpy188I TCNGA 3 cut(s) 65, 360, 1038
Hpy188III TCNNGA 5 cut(s) 237, 284, 483, 528, 987
Hpy8I GTNNAC 6 cut(s) 43, 608, 748, 784, 933, 1068
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 2 cut(s) 1001, 1065
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 8 cut(s) 128, 161, 299, 353, 374, 428, 648, 734
HpyF3I CTNAG 3 cut(s) 466, 1047, 1166
HpySE526I ACGT 1 cut(s) 786
Hsp92II CATG 7 cut(s) 349, 428, 652, 663, 725, 745, 961
Ksp22I TGATCA 1 cut(s) 718
KspAI GTTAAC 1 cut(s) 933
Kzo9I GATC 2 cut(s) 327, 718
LmnI GCTCC 2 cut(s) 220, 955
Lsp1109I GCAGC 1 cut(s) 903
LweI GCATC 6 cut(s) 286, 340, 485, 544, 721, 1033
MaeI CTAG 3 cut(s) 434, 528, 1077
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 2 cut(s) 28, 995
MalI GATC 2 cut(s) 329, 720
MboI GATC 2 cut(s) 327, 718
MboII GAAGA 6 cut(s) 113, 269, 575, 578, 836, 869
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 952
MlyI GAGTC 1 cut(s) 842
MnlI CCTC 4 cut(s) 9, 310, 507, 960
Mph1103I ATGCAT 2 cut(s) 430, 650
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 7 cut(s) 155, 177, 312, 336, 534, 932, 1195
MslI CAYNNNNRTG 3 cut(s) 344, 565, 726
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 3 cut(s) 396, 507, 819
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 2 cut(s) 246, 428
MvaI CCWGG 2 cut(s) 396, 819
NciI CCSGG 1 cut(s) 507
NcoI CCATGG 1 cut(s) 659
NdeII GATC 2 cut(s) 327, 718
NlaIII CATG 7 cut(s) 349, 428, 652, 663, 725, 745, 961
NlaIV GGNNCC 2 cut(s) 222, 657
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 2 cut(s) 430, 650
PaqCI CACCTGC 1 cut(s) 899
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 783
PctI GAATGC 2 cut(s) 246, 428
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 454, 538
PkrI GCNGC 1 cut(s) 918
PleI GAGTC 1 cut(s) 842
PpsI GAGTC 1 cut(s) 842
Psp6I CCWGG 2 cut(s) 394, 817
PspFI CCCAGC 1 cut(s) 1121
PspGI CCWGG 2 cut(s) 394, 817
PspN4I GGNNCC 2 cut(s) 222, 657
PspPI GGNCC 2 cut(s) 319, 392
PsrI GAACNNNNNNTAC 2 cut(s) 255, 287
RsaI GTAC 4 cut(s) 165, 273, 839, 878
RsaNI GTAC 4 cut(s) 164, 272, 838, 877
RseI CAYNNNNRTG 3 cut(s) 344, 565, 726
SaqAI TTAA 7 cut(s) 155, 177, 312, 336, 534, 932, 1195
SatI GCNGC 1 cut(s) 917
Sau3AI GATC 2 cut(s) 327, 718
Sau96I GGNCC 2 cut(s) 319, 392
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 3 cut(s) 396, 507, 819
SduI GDGCHC 1 cut(s) 952
SetI ASST 9 cut(s) 204, 251, 493, 523, 789, 823, 913, 949, 1172
SfaNI GCATC 6 cut(s) 286, 340, 485, 544, 721, 1033
SinI GGWCC 2 cut(s) 319, 392
SmiI ATTTAAAT 1 cut(s) 156
SmiMI CAYNNNNRTG 3 cut(s) 344, 565, 726
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
SsiI CCGC 3 cut(s) 307, 510, 906
SspMI CTAG 3 cut(s) 434, 528, 1077
StyD4I CCNGG 3 cut(s) 394, 505, 817
StyI CCWWGG 2 cut(s) 245, 659
SwaI ATTTAAAT 1 cut(s) 156
TaaI ACNGT 2 cut(s) 1001, 1065
TaiI ACGT 1 cut(s) 789
TatI WGTACW 2 cut(s) 163, 837
TfiI GAWTC 2 cut(s) 454, 538
Tru1I TTAA 7 cut(s) 155, 177, 312, 336, 534, 932, 1195
Tru9I TTAA 7 cut(s) 155, 177, 312, 336, 534, 932, 1195
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 916
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 93, 102, 711, 810, 1014
TspGWI ACGGA 2 cut(s) 259, 460
VpaK11BI GGWCC 2 cut(s) 319, 392
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 4 cut(s) 80, 232, 871, 1095
XbaI TCTAGA 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 3 cut(s) 434, 528, 1077
ZrmI AGTACT 1 cut(s) 165
Zsp2I ATGCAT 2 cut(s) 430, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.