Rorug03G0286200

G-quadruplex DNA unwinding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000080
Physical Location & Seq
Forward (+)
28846058 .. 28851385
5328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0286200.1

Sequence Viewer

Length: 1458 bp
ATGAATAAGAAGCAGGGTGTGTCATTGTTATTGTTGCTTCTGCTCAGTGCAGTTCATGGAGCTAAGTCAAGCAATGGCTACATCTCTGCAGTGGGAGACCCAGGAATGAAGAGAGATGGGCTGAGAGTGGCCTTGGAAGCTTGGAACTTCTGCAATGAAGTTGGCGAAGAAGCACCTGGAATGGGTAGCCCAAGAGCAGCAGATTGCTTCGATATCATAGATGGTACTCTCCAGCATAAGGTGAATGCTAGTGATAACAAACTCGGAGTGGGTATGCATTTCCCCGGGTTGAGCATCCATGATGAGAACAGTGTAGACATCTATGCAGCGAGGAAGGAGGAGCGTCTGGGGTGTTTGTGCCAAGTTTCGGATACTCCGAGACCGTGGCAATTTTGGATGATTATGTTAAAGAATGGAAACTTTGACACAGAGTCTGGTTTGTGTCCTTCGGATGGGAAAAGGGTTGGTCCTTTTTCGCAACCGGGAAGGTTTCCTTGCTTTGGAACTGGGTGTATGAACCAGCCCACTGTGAATCACCAAGAGACTCAGCTTTTGGGTGATGGCACAATGATTGGAGGCTTCAAGGGAACCTATGATTTGGGGTCTGATATTGGGGCTGGACTTGATGGAGTTTCTTTCTATGAGGTGGTTTGGCAGAAGAAACAGGGGGAAGGGAGTTGGATGTTCCATCACAAGCTCAAGACCTCGAAGAAGTACCCATGGCTGATGCTCTACCTCAGAGCTGATGCAACAAAAGGATTTTCTGGGGGCTATCACTATGATACAAGGGGAATGCTCAAAACTCTTCCAGAGGGTCCAAATTTTAAGGTGAGGCTGACTTTGGATATCAAACAAGGAGGAGGACCCAAGAGCCAGTTTTACCTAATTGACATTGGTAGCTGTTGGAAGAACAATGGCCAGCCTTGCACTGGAGATGTCACCACCGATGTAACCAGATACACCGAGATGATCATAAACCCTGATACCCCTGCTTGGTGCAGCCCTAAAGCTCAGGGAAATTGCCCGCCATACCACATTACTCCAGATGACAGAAAAATCTACAAAAATGACACAGCTAATTTCCCATACGGTGCATATCACTACTACTGTGCTCCAGGGAATGCGAAATTTGTAGATAAAGATGTGGGGCCGTGCGATCCCTACAGTAACCCTCAGGCGCAAGAGATACTCCAGTTGCTTCCTCACCCCATATGGGGCGAGTATGGCTATCCAACTAAAAAAGGACAAGGTTGGATTGGTGACGCTAGAACTTGGGAGCTTGATGTTGGTGGACTATCAAGTAGACTCTACTACTATCAGGATCCAGGCACGACTCCTGCTAGAAGGATATGGACATCACTCGATGTCGGTACCGAAATTTTTGTTAGTGACAAAGATGAAGTGGCCGAGTGGACTCTAAGCGACTTCGACGTCATTTTTACACCACCTCAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

485

Amino Acids

53.75

Weight (kDa)

5.91

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 28 - 479 5.9e-249 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1430
AatII GACGTC 1 cut(s) 1434
Acc65I GGTACC 1 cut(s) 1370
AccB1I GGYRCC 1 cut(s) 1370
AccI GTMKAC 2 cut(s) 315, 1303
AciI CCGC 1 cut(s) 1025
AclWI GGATC 3 cut(s) 1151, 1316, 1329
AcoI YGGCCR 2 cut(s) 916, 1404
AcsI RAATTY 3 cut(s) 820, 1127, 1377
AcyI GRCGYC 1 cut(s) 1431
AfaI GTAC 3 cut(s) 226, 716, 1372
AfiI CCNNNNNNNGG 9 cut(s) 182, 238, 367, 452, 500, 929, 993, 1213, 1214
AgsI TTSAA 1 cut(s) 583
AhdI GACNNNNNGTC 1 cut(s) 430
AjnI CCWGG 4 cut(s) 100, 175, 1114, 1324
AluBI AGCT 9 cut(s) 62, 140, 550, 697, 743, 900, 1010, 1076, 1279
AluI AGCT 9 cut(s) 62, 140, 550, 697, 743, 900, 1010, 1076, 1279
Alw21I GWGCWC 1 cut(s) 1114
Alw26I GTCTC 3 cut(s) 90, 373, 536
AlwI GGATC 3 cut(s) 1151, 1316, 1329
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 129, 916, 1148, 1404
ApeKI GCWGC 3 cut(s) 197, 326, 999
ApoI RAATTY 3 cut(s) 820, 1127, 1377
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
Asp718I GGTACC 1 cut(s) 1370
AspLEI GCGC 1 cut(s) 1180
AspS9I GGNCC 4 cut(s) 467, 815, 863, 1148
AsuC2I CCSGG 3 cut(s) 285, 286, 483
AsuHPI GGTGA 7 cut(s) 253, 527, 569, 841, 931, 1196, 1271
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 3 cut(s) 467, 815, 863
AxyI CCTNAGG 1 cut(s) 1173
BaeI ACNNNNGTAYC 2 cut(s) 1178, 1211
BalI TGGCCA 1 cut(s) 918
BamHI GGATCC 1 cut(s) 1321
BanI GGYRCC 1 cut(s) 1370
Bbv12I GWGCWC 1 cut(s) 1114
BbvI GCAGC 3 cut(s) 209, 338, 1011
BccI CCATC 6 cut(s) 110, 215, 446, 554, 620, 696
BceAI ACGGC 1 cut(s) 1135
BciT130I CCWGG 4 cut(s) 102, 177, 1116, 1326
BciVI GTATCC 1 cut(s) 364
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 3 cut(s) 285, 286, 483
BcoDI GTCTC 3 cut(s) 90, 373, 536
BfaI CTAG 3 cut(s) 249, 1266, 1341
BfmI CTRYAG 2 cut(s) 87, 1162
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 3 cut(s) 198, 327, 1000
BlsI GCNGC 3 cut(s) 199, 328, 1001
Bme1390I CCNGG 7 cut(s) 102, 177, 285, 286, 483, 1116, 1326
Bme18I GGWCC 3 cut(s) 467, 815, 863
BmeRI GACNNNNNGTC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 4 cut(s) 467, 815, 863, 1148
BmiI GGNNCC 6 cut(s) 589, 816, 865, 1149, 1323, 1372
BmrFI CCNGG 7 cut(s) 102, 177, 285, 286, 483, 1116, 1326
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 3 cut(s) 303, 717, 736
BmuI ACTGGG 1 cut(s) 516
BpmI CTGGAG 5 cut(s) 215, 951, 1026, 1098, 1175
Bpu10I CCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 1 cut(s) 683
BpuMI CCSGG 3 cut(s) 285, 286, 483
BsaHI GRCGYC 1 cut(s) 1431
BsaI GGTCTC 2 cut(s) 90, 373
BsaJI CCNNGG 7 cut(s) 100, 132, 283, 284, 383, 719, 1115
Bsc4I CCNNNNNNNGG 9 cut(s) 182, 238, 367, 452, 500, 929, 993, 1213, 1214
Bse1I ACTGG 4 cut(s) 511, 874, 934, 1192
Bse21I CCTNAGG 1 cut(s) 1173
Bse3DI GCAATG 2 cut(s) 79, 160
BseBI CCWGG 4 cut(s) 102, 177, 1116, 1326
BseDI CCNNGG 7 cut(s) 100, 132, 283, 284, 383, 719, 1115
BseGI GGATG 4 cut(s) 294, 402, 457, 687
BseLI CCNNNNNNNGG 9 cut(s) 182, 238, 367, 452, 500, 929, 993, 1213, 1214
BseMI GCAATG 2 cut(s) 79, 160
BseMII CTCAG 6 cut(s) 58, 113, 560, 751, 1025, 1187
BseNI ACTGG 4 cut(s) 511, 874, 934, 1192
BseRI GAGGAG 2 cut(s) 353, 873
BseXI GCAGC 3 cut(s) 209, 338, 1011
BsgI GTGCAG 2 cut(s) 69, 1018
BshFI GGCC 4 cut(s) 131, 918, 1150, 1406
BshNI GGYRCC 1 cut(s) 1370
BsiHKAI GWGCWC 1 cut(s) 1114
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 285, 482
BslI CCNNNNNNNGG 9 cut(s) 182, 238, 367, 452, 500, 929, 993, 1213, 1214
BsmAI GTCTC 3 cut(s) 90, 373, 536
BsmI GAATGC 3 cut(s) 250, 798, 1126
BsnI GGCC 4 cut(s) 131, 918, 1150, 1406
Bso31I GGTCTC 2 cut(s) 90, 373
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 1114
Bsp143I GATC 3 cut(s) 969, 1156, 1321
Bsp19I CCATGG 1 cut(s) 719
BspACI CCGC 1 cut(s) 1025
BspANI GGCC 4 cut(s) 131, 918, 1150, 1406
BspCNI CTCAG 6 cut(s) 57, 114, 559, 750, 1024, 1186
BspLI GGNNCC 6 cut(s) 589, 816, 865, 1149, 1323, 1372
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 3 cut(s) 1151, 1316, 1329
BspT107I GGYRCC 1 cut(s) 1370
BspTNI GGTCTC 2 cut(s) 90, 373
BsrDI GCAATG 2 cut(s) 79, 160
BsrI ACTGG 4 cut(s) 511, 874, 934, 1192
BssECI CCNNGG 7 cut(s) 100, 132, 283, 284, 383, 719, 1115
BssMI GATC 3 cut(s) 969, 1156, 1321
BssNI GRCGYC 1 cut(s) 1431
BssT1I CCWWGG 2 cut(s) 132, 719
Bst2UI CCWGG 4 cut(s) 102, 177, 1116, 1326
Bst4CI ACNGT 6 cut(s) 311, 384, 529, 1091, 1109, 1166
Bst6I CTCTTC 2 cut(s) 104, 810
BstACI GRCGYC 1 cut(s) 1431
BstC8I GCNNGC 2 cut(s) 920, 1025
BstDEI CTNAG 8 cut(s) 44, 63, 122, 546, 737, 1011, 1173, 1418
BstDSI CCRYGG 2 cut(s) 383, 719
BstF5I GGATG 4 cut(s) 294, 402, 457, 687
BstHHI GCGC 1 cut(s) 1180
BstKTI GATC 3 cut(s) 972, 1159, 1324
BstMAI GTCTC 3 cut(s) 90, 373, 536
BstMBI GATC 3 cut(s) 969, 1156, 1321
BstMWI GCNNNNNNNGC 3 cut(s) 137, 924, 1224
BstNI CCWGG 4 cut(s) 102, 177, 1116, 1326
BstSCI CCNGG 7 cut(s) 100, 175, 283, 284, 481, 1114, 1324
BstSFI CTRYAG 2 cut(s) 87, 1162
BstV1I GCAGC 3 cut(s) 209, 338, 1011
BstX2I RGATCY 1 cut(s) 1321
BstYI RGATCY 1 cut(s) 1321
Bsu36I CCTNAGG 1 cut(s) 1173
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 4 cut(s) 131, 918, 1150, 1406
BtgI CCRYGG 2 cut(s) 383, 719
BtsCI GGATG 4 cut(s) 294, 402, 457, 687
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 5 cut(s) 52, 96, 316, 525, 927
Cac8I GCNNGC 2 cut(s) 920, 1025
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 1 cut(s) 1180
Cfr13I GGNCC 4 cut(s) 467, 815, 863, 1148
Cfr9I CCCGGG 1 cut(s) 284
CseI GACGC 2 cut(s) 332, 1271
Csp6I GTAC 3 cut(s) 225, 715, 1371
CviAII CATG 3 cut(s) 56, 299, 720
CviQI GTAC 3 cut(s) 225, 715, 1371
DdeI CTNAG 8 cut(s) 44, 63, 122, 546, 737, 1011, 1173, 1418
DpnI GATC 3 cut(s) 971, 1158, 1323
DpnII GATC 3 cut(s) 969, 1156, 1321
DrdI GACNNNNNNGTC 1 cut(s) 1430
DriI GACNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 1430
EaeI YGGCCR 2 cut(s) 916, 1404
Eam1104I CTCTTC 2 cut(s) 104, 810
Eam1105I GACNNNNNGTC 1 cut(s) 430
EarI CTCTTC 2 cut(s) 104, 810
Eco130I CCWWGG 2 cut(s) 132, 719
Eco31I GGTCTC 2 cut(s) 90, 373
Eco32I GATATC 2 cut(s) 214, 847
Eco47I GGWCC 3 cut(s) 467, 815, 863
Eco81I CCTNAGG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 863
EcoRII CCWGG 4 cut(s) 100, 175, 1114, 1324
EcoRV GATATC 2 cut(s) 214, 847
EcoT14I CCWWGG 2 cut(s) 132, 719
EcoT22I ATGCAT 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 132, 719
FaeI CATG 3 cut(s) 59, 302, 723
FalI AAGNNNNNCTT 2 cut(s) 478, 510
FatI CATG 3 cut(s) 55, 298, 719
FauI CCCGC 1 cut(s) 1032
FauNDI CATATG 1 cut(s) 1211
FbaI TGATCA 1 cut(s) 969
FblI GTMKAC 2 cut(s) 315, 1303
Fnu4HI GCNGC 3 cut(s) 198, 327, 1000
FokI GGATG 4 cut(s) 281, 409, 464, 694
Fsp4HI GCNGC 3 cut(s) 198, 327, 1000
FspBI CTAG 3 cut(s) 249, 1266, 1341
GlaI GCGC 1 cut(s) 1179
GluI GCNGC 3 cut(s) 198, 327, 1000
GsuI CTGGAG 5 cut(s) 215, 951, 1026, 1098, 1175
HaeIII GGCC 4 cut(s) 131, 918, 1150, 1406
HapII CCGG 2 cut(s) 285, 482
HgaI GACGC 2 cut(s) 332, 1271
HhaI GCGC 1 cut(s) 1180
Hin1I GRCGYC 1 cut(s) 1431
Hin1II CATG 3 cut(s) 59, 302, 723
Hin6I GCGC 1 cut(s) 1178
HinP1I GCGC 1 cut(s) 1178
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 6 cut(s) 431, 532, 544, 1305, 1333, 1414
HpaII CCGG 2 cut(s) 285, 482
HphI GGTGA 7 cut(s) 253, 527, 569, 841, 931, 1196, 1271
Hpy166II GTNNAC 4 cut(s) 316, 1292, 1304, 1413
Hpy188I TCNGA 6 cut(s) 266, 370, 378, 451, 607, 740
Hpy188III TCNNGA 4 cut(s) 700, 809, 1043, 1319
Hpy8I GTNNAC 4 cut(s) 316, 1292, 1304, 1413
Hpy99I CGWCG 1 cut(s) 1433
HpyAV CCTTC 5 cut(s) 328, 456, 480, 665, 1338
HpyCH4III ACNGT 6 cut(s) 311, 384, 529, 1091, 1109, 1166
HpyCH4IV ACGT 1 cut(s) 1431
HpyCH4V TGCA 9 cut(s) 50, 89, 153, 277, 326, 749, 927, 999, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 924, 1224
HpyF3I CTNAG 8 cut(s) 44, 63, 122, 546, 737, 1011, 1173, 1418
HpySE526I ACGT 1 cut(s) 1431
Hsp92I GRCGYC 1 cut(s) 1431
Hsp92II CATG 3 cut(s) 59, 302, 723
HspAI GCGC 1 cut(s) 1178
KpnI GGTACC 1 cut(s) 1374
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 3 cut(s) 969, 1156, 1321
LmnI GCTCC 4 cut(s) 59, 340, 1117, 1276
Lsp1109I GCAGC 3 cut(s) 209, 338, 1011
LweI GCATC 3 cut(s) 303, 717, 736
MaeI CTAG 3 cut(s) 249, 1266, 1341
MaeII ACGT 1 cut(s) 1431
MaeIII GTNAC 5 cut(s) 937, 949, 1166, 1259, 1388
MalI GATC 3 cut(s) 971, 1158, 1323
MboI GATC 3 cut(s) 969, 1156, 1321
MboII GAAGA 6 cut(s) 121, 179, 670, 721, 797, 919
MflI RGATCY 1 cut(s) 1321
MhlI GDGCHC 1 cut(s) 1114
MlsI TGGCCA 1 cut(s) 918
MluCI AATT 7 cut(s) 389, 820, 885, 1018, 1078, 1127, 1377
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 5 cut(s) 440, 538, 1299, 1327, 1408
MmeI TCCRAC 4 cut(s) 659, 884, 1232, 1256
Mox20I TGGCCA 1 cut(s) 918
Mph1103I ATGCAT 1 cut(s) 279
MscI TGGCCA 1 cut(s) 918
MseI TTAA 2 cut(s) 407, 825
MslI CAYNNNNRTG 1 cut(s) 965
Msp20I TGGCCA 1 cut(s) 918
MspI CCGG 2 cut(s) 285, 482
MspR9I CCNGG 7 cut(s) 102, 177, 285, 286, 483, 1116, 1326
Mva1269I GAATGC 3 cut(s) 250, 798, 1126
MvaI CCWGG 4 cut(s) 102, 177, 1116, 1326
MwoI GCNNNNNNNGC 3 cut(s) 137, 924, 1224
NciI CCSGG 3 cut(s) 285, 286, 483
NcoI CCATGG 1 cut(s) 719
NdeI CATATG 1 cut(s) 1211
NdeII GATC 3 cut(s) 969, 1156, 1321
NlaIII CATG 3 cut(s) 59, 302, 723
NlaIV GGNNCC 6 cut(s) 589, 816, 865, 1149, 1323, 1372
NmeAIII GCCGAG 1 cut(s) 1432
NmuCI GTSAC 3 cut(s) 937, 1259, 1388
NsiI ATGCAT 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 3 cut(s) 250, 798, 1126
PfeI GAWTC 1 cut(s) 532
PkrI GCNGC 3 cut(s) 199, 328, 1001
PleI GAGTC 5 cut(s) 439, 538, 1299, 1327, 1408
PpsI GAGTC 5 cut(s) 439, 538, 1299, 1327, 1408
PpuMI RGGWCCY 1 cut(s) 863
Psp5II RGGWCCY 1 cut(s) 863
Psp6I CCWGG 4 cut(s) 100, 175, 1114, 1324
PspGI CCWGG 4 cut(s) 100, 175, 1114, 1324
PspN4I GGNNCC 6 cut(s) 589, 816, 865, 1149, 1323, 1372
PspPI GGNCC 4 cut(s) 467, 815, 863, 1148
PspPPI RGGWCCY 1 cut(s) 863
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 1321
RsaI GTAC 3 cut(s) 226, 716, 1372
RsaNI GTAC 3 cut(s) 225, 715, 1371
RseI CAYNNNNRTG 1 cut(s) 965
SaqAI TTAA 2 cut(s) 407, 825
SatI GCNGC 3 cut(s) 198, 327, 1000
Sau3AI GATC 3 cut(s) 969, 1156, 1321
Sau96I GGNCC 4 cut(s) 467, 815, 863, 1148
SchI GAGTC 5 cut(s) 440, 538, 1299, 1327, 1408
ScrFI CCNGG 7 cut(s) 102, 177, 285, 286, 483, 1116, 1326
SduI GDGCHC 1 cut(s) 1114
SfaNI GCATC 3 cut(s) 303, 717, 736
SfcI CTRYAG 2 cut(s) 87, 1162
SinI GGWCC 3 cut(s) 467, 815, 863
SmaI CCCGGG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 965
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
Sse9I AATT 7 cut(s) 389, 820, 885, 1018, 1078, 1127, 1377
SsiI CCGC 1 cut(s) 1025
SspMI CTAG 3 cut(s) 249, 1266, 1341
StyD4I CCNGG 7 cut(s) 100, 175, 283, 284, 481, 1114, 1324
StyI CCWWGG 2 cut(s) 132, 719
TaaI ACNGT 6 cut(s) 311, 384, 529, 1091, 1109, 1166
TaiI ACGT 1 cut(s) 1434
TaqI TCGA 4 cut(s) 210, 707, 1362, 1428
TasI AATT 7 cut(s) 389, 820, 885, 1018, 1078, 1127, 1377
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 2 cut(s) 407, 825
Tru9I TTAA 2 cut(s) 407, 825
TscAI CASTG 5 cut(s) 52, 96, 316, 532, 934
TseFI GTSAC 3 cut(s) 937, 1259, 1388
TseI GCWGC 3 cut(s) 197, 326, 999
Tsp45I GTSAC 3 cut(s) 937, 1259, 1388
TspDTI ATGAA 6 cut(s) 17, 44, 122, 171, 530, 1413
TspMI CCCGGG 1 cut(s) 284
TspRI CASTG 5 cut(s) 52, 96, 316, 532, 934
VpaK11BI GGWCC 3 cut(s) 467, 815, 863
XapI RAATTY 3 cut(s) 820, 1127, 1377
XcmI CCANNNNNNNNNTGG 1 cut(s) 926
XmaI CCCGGG 1 cut(s) 284
XmiI GTMKAC 2 cut(s) 315, 1303
XspI CTAG 3 cut(s) 249, 1266, 1341
ZraI GACGTC 1 cut(s) 1432
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.