Rorug04G0209800

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000080
Physical Location & Seq
Forward (+)
36534904 .. 36547289
12386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0209800.1

Sequence Viewer

Length: 1428 bp
ATGCAGCAGAAACTAGAAATGGGACAGATGGTTGATGAAAAGAAGAAATGGACGATTACATTTGCGAGAGAGTTGAAGAAGGAGGGTATAATAGCTGCACCAATGGTGGCAGTGACGGCACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCCCTCTCCAGTGTTGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTCAGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAAACTTGGAACTTATACTTGTACTGCTATGATATCCCTTCTCTTGGTTTGTCCTCCAGTATGTCTCCTATGGATATTCATGGATAAATTTTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATTCCTGCACTATTTGGTGCTTCAATTATTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTCATTTTCCCAATGCTCCTATCCTCTTTTGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGGATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAATGTATTCCTCAGTCTTCGAGAAAACCCGTATTACAATTTCAAAAGATTCTATTCTTCATGTTGGAGAGTTCTTTCGCTTGGCTATCCCGTCTGCTGTAATGGTTTGTCTGAAATGGTGGTCGTGCGAGCTACTTATTTTGCTGTCCGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCCATATGCCTTACAATCTCTACTTTGCACTTCACTTTATCATATGGATTTGGAGCTGCTGCAAGTGCTCGGGTATCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAAGCGCTTATTGTAAGCACAACTCTCTTTTGCTGTCGTTCTGTTGTGGGACGTGCTTTCAGCAGTGAGAAGCAGGTAGTGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTACTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTGGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTACTCGGGTTTCCTGTGCACTTAAGGGGAAAAGGCCTTTGGATCGGAATAGTGGTCGGCTCTGTTGTACAATCAACTCTTCTGGGTTGCATCACCTGTTTCACAAATTGGACTAAACAGGTTCATAACTCAATTTTATTTTATTTTTTATCATATCAACCAATTCATTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

475

Amino Acids

51.76

Weight (kDa)

8.99

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 34 - 192 6.4e-27 MatE
MatE PF01554 255 - 417 1.2e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 239
Acc36I ACCTGC 2 cut(s) 239, 1075
AclWI GGATC 3 cut(s) 404, 417, 1301
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 4 cut(s) 410, 613, 837, 1032
AfaI GTAC 4 cut(s) 322, 1158, 1254, 1320
AfeI AGCGCT 1 cut(s) 1017
AfiI CCNNNNNNNGG 3 cut(s) 270, 343, 401
AflII CTTAAG 1 cut(s) 1273
AgsI TTSAA 4 cut(s) 76, 444, 477, 717
AhlI ACTAGT 1 cut(s) 139
AjiI CACGTC 1 cut(s) 1064
AjnI CCWGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 2 cut(s) 1273, 1305
Alw21I GWGCWC 2 cut(s) 931, 1272
Alw26I GTCTC 4 cut(s) 368, 513, 521, 842
Alw44I GTGCAC 1 cut(s) 1268
AlwI GGATC 3 cut(s) 404, 417, 1301
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 3 cut(s) 930, 972, 1256
Aor51HI AGCGCT 1 cut(s) 1017
AoxI GGCC 3 cut(s) 403, 823, 1285
ApaLI GTGCAC 1 cut(s) 1268
ApeKI GCWGC 7 cut(s) 4, 95, 917, 920, 968, 989, 1189
ApoI RAATTY 1 cut(s) 386
AspLEI GCGC 1 cut(s) 1018
AsuHPI GGTGA 2 cut(s) 202, 1336
AvaI CYCGRG 3 cut(s) 930, 972, 1256
BaeGI GKGCMC 1 cut(s) 1272
BaeI ACNNNNGTAYC 4 cut(s) 110, 143, 1244, 1277
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 682
Bbv12I GWGCWC 2 cut(s) 931, 1272
BbvI GCAGC 7 cut(s) 16, 82, 904, 907, 976, 980, 1201
BccI CCATC 2 cut(s) 22, 1179
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 407
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 4 cut(s) 368, 513, 521, 842
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 4 cut(s) 14, 140, 845, 1173
BfmI CTRYAG 2 cut(s) 122, 990
BfoI RGCGCY 1 cut(s) 1019
BfrI CTTAAG 1 cut(s) 1273
BfuAI ACCTGC 2 cut(s) 239, 1075
BglI GCCNNNNNGGC 1 cut(s) 578
BisI GCNGC 7 cut(s) 5, 96, 918, 921, 969, 990, 1190
BlsI GCNGC 7 cut(s) 6, 97, 919, 922, 970, 991, 1191
BmcAI AGTACT 1 cut(s) 1158
Bme1390I CCNGG 1 cut(s) 407
BmeT110I CYCGRG 3 cut(s) 930, 972, 1256
BmgBI CACGTC 1 cut(s) 1064
BmiI GGNNCC 2 cut(s) 411, 667
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 1350
BpiI GAAGAC 1 cut(s) 682
BpmI CTGGAG 2 cut(s) 169, 339
Bsa29I ATCGAT 1 cut(s) 146
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 343, 401
Bse1I ACTGG 4 cut(s) 186, 226, 356, 505
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 407
BseCI ATCGAT 1 cut(s) 146
BseGI GGATG 1 cut(s) 1190
BseLI CCNNNNNNNGG 3 cut(s) 270, 343, 401
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 5 cut(s) 524, 699, 1017, 1143, 1176
BseNI ACTGG 4 cut(s) 186, 226, 356, 505
BseSI GKGCMC 1 cut(s) 1272
BseXI GCAGC 7 cut(s) 16, 82, 904, 907, 976, 980, 1201
BseYI CCCAGC 2 cut(s) 595, 661
BsgI GTGCAG 2 cut(s) 81, 444
BshFI GGCC 3 cut(s) 405, 825, 1287
BshVI ATCGAT 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 931, 1272
BsiHKCI CYCGRG 3 cut(s) 930, 972, 1256
BsiSI CCGG 1 cut(s) 822
BslFI GGGAC 2 cut(s) 36, 1074
BslI CCNNNNNNNGG 3 cut(s) 270, 343, 401
BsmAI GTCTC 4 cut(s) 368, 513, 521, 842
BsmFI GGGAC 2 cut(s) 36, 1074
BsnI GGCC 3 cut(s) 405, 825, 1287
BsoBI CYCGRG 3 cut(s) 930, 972, 1256
Bsp1286I GDGCHC 3 cut(s) 583, 931, 1272
Bsp1407I TGTACA 1 cut(s) 1318
Bsp143I GATC 3 cut(s) 169, 409, 1293
BspANI GGCC 3 cut(s) 405, 825, 1287
BspCNI CTCAG 5 cut(s) 523, 698, 1016, 1142, 1175
BspDI ATCGAT 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 411, 667
BspMAI CTGCAG 2 cut(s) 126, 994
BspMI ACCTGC 2 cut(s) 239, 1075
BspPI GGATC 3 cut(s) 404, 417, 1301
BspTI CTTAAG 1 cut(s) 1273
BsrDI GCAATG 1 cut(s) 681
BsrGI TGTACA 1 cut(s) 1318
BsrI ACTGG 4 cut(s) 186, 226, 356, 505
BssMI GATC 3 cut(s) 169, 409, 1293
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 2 cut(s) 563, 1335
BstAFI CTTAAG 1 cut(s) 1273
BstAUI TGTACA 1 cut(s) 1318
BstC8I GCNNGC 3 cut(s) 276, 433, 803
BstDEI CTNAG 5 cut(s) 510, 685, 1003, 1129, 1162
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 1190
BstH2I RGCGCY 1 cut(s) 1019
BstHHI GCGC 1 cut(s) 1018
BstKTI GATC 3 cut(s) 172, 412, 1296
BstMAI GTCTC 4 cut(s) 368, 513, 521, 842
BstMBI GATC 3 cut(s) 169, 409, 1293
BstMWI GCNNNNNNNGC 6 cut(s) 116, 284, 578, 926, 977, 986
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstSFI CTRYAG 2 cut(s) 122, 990
BstSLI GKGCMC 1 cut(s) 1272
BstV1I GCAGC 7 cut(s) 16, 82, 904, 907, 976, 980, 1201
BstV2I GAAGAC 1 cut(s) 682
BstX2I RGATCY 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 1 cut(s) 409
Bsu15I ATCGAT 1 cut(s) 146
BsuRI GGCC 3 cut(s) 405, 825, 1287
BsuTUI ATCGAT 1 cut(s) 146
BtrI CACGTC 1 cut(s) 1064
BtsCI GGATG 1 cut(s) 1190
BtsI GCAGTG 4 cut(s) 117, 119, 999, 1081
BtsIMutI CAGTG 7 cut(s) 117, 119, 193, 219, 999, 1008, 1081
BveI ACCTGC 2 cut(s) 239, 1075
Cac8I GCNNGC 3 cut(s) 276, 433, 803
CaiI CAGNNNCTG 1 cut(s) 1010
CfoI GCGC 1 cut(s) 1018
ClaI ATCGAT 1 cut(s) 146
Csp6I GTAC 4 cut(s) 321, 1157, 1253, 1319
CviAII CATG 4 cut(s) 379, 576, 734, 1425
CviQI GTAC 4 cut(s) 321, 1157, 1253, 1319
DdeI CTNAG 5 cut(s) 510, 685, 1003, 1129, 1162
DpnI GATC 3 cut(s) 171, 411, 1295
DpnII GATC 3 cut(s) 169, 409, 1293
Eam1104I CTCTTC 2 cut(s) 563, 1335
EarI CTCTTC 2 cut(s) 563, 1335
Eco147I AGGCCT 1 cut(s) 1287
Eco24I GRGCYC 1 cut(s) 583
Eco32I GATATC 2 cut(s) 333, 420
Eco47III AGCGCT 1 cut(s) 1017
Eco57I CTGAAG 4 cut(s) 410, 613, 837, 1032
Eco88I CYCGRG 3 cut(s) 930, 972, 1256
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 2 cut(s) 333, 420
EcoT38I GRGCYC 1 cut(s) 583
FaeI CATG 4 cut(s) 382, 579, 737, 1428
FaqI GGGAC 2 cut(s) 36, 1074
FatI CATG 4 cut(s) 378, 575, 733, 1424
FauNDI CATATG 2 cut(s) 866, 904
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 7 cut(s) 5, 96, 918, 921, 969, 990, 1190
FokI GGATG 1 cut(s) 1197
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 7 cut(s) 5, 96, 918, 921, 969, 990, 1190
FspBI CTAG 4 cut(s) 14, 140, 845, 1173
GlaI GCGC 1 cut(s) 1017
GluI GCNGC 7 cut(s) 5, 96, 918, 921, 969, 990, 1190
GsaI CCCAGC 2 cut(s) 599, 665
GsuI CTGGAG 2 cut(s) 169, 339
HaeII RGCGCY 1 cut(s) 1019
HaeIII GGCC 3 cut(s) 405, 825, 1287
HapII CCGG 1 cut(s) 822
HhaI GCGC 1 cut(s) 1018
Hin1II CATG 4 cut(s) 382, 579, 737, 1428
Hin6I GCGC 1 cut(s) 1016
HinP1I GCGC 1 cut(s) 1016
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 2 cut(s) 514, 722
HpaI GTTAAC 1 cut(s) 492
HpaII CCGG 1 cut(s) 822
HphI GGTGA 2 cut(s) 202, 1336
Hpy166II GTNNAC 3 cut(s) 492, 1093, 1270
Hpy188I TCNGA 5 cut(s) 161, 513, 786, 1119, 1298
Hpy188III TCNNGA 3 cut(s) 167, 240, 694
Hpy8I GTNNAC 3 cut(s) 492, 1093, 1270
HpyAV CCTTC 6 cut(s) 73, 242, 347, 434, 637, 836
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 1 cut(s) 1063
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 284, 578, 926, 977, 986
HpyF3I CTNAG 5 cut(s) 510, 685, 1003, 1129, 1162
HpySE526I ACGT 1 cut(s) 1063
Hsp92II CATG 4 cut(s) 382, 579, 737, 1428
HspAI GCGC 1 cut(s) 1016
Ksp22I TGATCA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 492
Kzo9I GATC 3 cut(s) 169, 409, 1293
LmnI GCTCC 4 cut(s) 284, 537, 914, 950
Lsp1109I GCAGC 7 cut(s) 16, 82, 904, 907, 976, 980, 1201
LweI GCATC 1 cut(s) 1350
MaeI CTAG 4 cut(s) 14, 140, 845, 1173
MaeII ACGT 1 cut(s) 1063
MaeIII GTNAC 3 cut(s) 112, 217, 1006
MalI GATC 3 cut(s) 171, 411, 1295
MboI GATC 3 cut(s) 169, 409, 1293
MboII GAAGA 8 cut(s) 55, 88, 122, 545, 550, 682, 722, 1322
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 3 cut(s) 583, 931, 1272
MluCI AATT 8 cut(s) 195, 386, 477, 711, 944, 1357, 1383, 1413
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 3 cut(s) 139, 718, 1213
MnlI CCTC 9 cut(s) 76, 191, 363, 550, 583, 694, 1125, 1136, 1169
MseI TTAA 3 cut(s) 483, 491, 1274
MspCI CTTAAG 1 cut(s) 1273
MspI CCGG 1 cut(s) 822
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 6 cut(s) 116, 284, 578, 926, 977, 986
NdeI CATATG 2 cut(s) 866, 904
NdeII GATC 3 cut(s) 169, 409, 1293
NlaIII CATG 4 cut(s) 382, 579, 737, 1428
NlaIV GGNNCC 2 cut(s) 411, 667
NmuCI GTSAC 3 cut(s) 112, 217, 1006
PaeR7I CTCGAG 1 cut(s) 972
PaqCI CACCTGC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 1287
PfeI GAWTC 1 cut(s) 722
PkrI GCNGC 7 cut(s) 6, 97, 919, 922, 970, 991, 1191
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 2 cut(s) 595, 661
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 411, 667
PspXI VCTCGAGB 1 cut(s) 972
PstI CTGCAG 2 cut(s) 126, 994
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 4 cut(s) 322, 1158, 1254, 1320
RsaNI GTAC 4 cut(s) 321, 1157, 1253, 1319
SaqAI TTAA 3 cut(s) 483, 491, 1274
SatI GCNGC 7 cut(s) 5, 96, 918, 921, 969, 990, 1190
Sau3AI GATC 3 cut(s) 169, 409, 1293
ScaI AGTACT 1 cut(s) 1158
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 3 cut(s) 583, 931, 1272
SfaNI GCATC 1 cut(s) 1350
SfcI CTRYAG 2 cut(s) 122, 990
Sfr274I CTCGAG 1 cut(s) 972
SlaI CTCGAG 1 cut(s) 972
SmlI CTYRAG 2 cut(s) 972, 1273
SmoI CTYRAG 2 cut(s) 972, 1273
SpeI ACTAGT 1 cut(s) 139
Sse9I AATT 8 cut(s) 195, 386, 477, 711, 944, 1357, 1383, 1413
SseBI AGGCCT 1 cut(s) 1287
SspI AATATT 1 cut(s) 440
SspMI CTAG 4 cut(s) 14, 140, 845, 1173
StuI AGGCCT 1 cut(s) 1287
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 1 cut(s) 1066
TaqI TCGA 3 cut(s) 146, 693, 973
TasI AATT 8 cut(s) 195, 386, 477, 711, 944, 1357, 1383, 1413
TatI WGTACW 3 cut(s) 320, 1156, 1318
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 3 cut(s) 483, 491, 1274
Tru9I TTAA 3 cut(s) 483, 491, 1274
TscAI CASTG 7 cut(s) 117, 126, 193, 226, 999, 1015, 1081
TseFI GTSAC 3 cut(s) 112, 217, 1006
TseI GCWGC 7 cut(s) 4, 95, 917, 920, 968, 989, 1189
Tsp45I GTSAC 3 cut(s) 112, 217, 1006
TspDTI ATGAA 6 cut(s) 51, 367, 722, 957, 1364, 1406
TspRI CASTG 7 cut(s) 117, 126, 193, 226, 999, 1015, 1081
Vha464I CTTAAG 1 cut(s) 1273
VneI GTGCAC 1 cut(s) 1268
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 1 cut(s) 386
XhoI CTCGAG 1 cut(s) 972
XspI CTAG 4 cut(s) 14, 140, 845, 1173
ZrmI AGTACT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.