Rmu_sc0006478.1_g000019

Helitron helicase-like domain at N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006478.1
OG0000080
Physical Location & Seq
Forward (+)
59157 .. 59657
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006478.1_g000019.1.cds

Sequence Viewer

Length: 501 bp
atgggtgtgcatgttgatgaatccattaatgttcaaggccgtggaatttatacttttcgtgctcaaggttctatatatcataagattggtgggattttaccaagtgaagggacgagaccacgatatctacaagcttacatatatgacaccgagcatgaacttgacaatagattgtctgaaagtgcagttttagacaggggactggttgaaaagatacaacatatattgaatcactataatccatttgtctaccactttcgaagtctaggacaacgccaagacttgcccaactgcaggctcatcataagagaacaaccttctaatcaacgtcagtataacttaccatctgcatcccaagttgctgctattatagtaagatgggccgacatcaatccaaatggaagagatttaattgtccaaacaattagcggacgactctggaatgtcaaagactcagtcggatattatgaccccatgcagtatccattattattaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

166

Amino Acids

19.12

Weight (kDa)

7.9

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 429
AcsI RAATTY 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 107, 294
AgsI TTSAA 3 cut(s) 35, 209, 229
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 109
AoxI GGCC 2 cut(s) 37, 381
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 45
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AseI ATTAAT 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 381
AsuII TTCGAA 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 349
BccI CCATC 2 cut(s) 352, 372
BceAI ACGGC 1 cut(s) 24
BciVI GTATCC 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 292
BfuI GTATCC 1 cut(s) 492
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 381
BmsI GCATC 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 294
Bse1I ACTGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 350
BseLI CCNNNNNNNGG 2 cut(s) 107, 294
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 2 cut(s) 39, 383
BsiHKAI GWGCWC 1 cut(s) 64
BslFI GGGAC 2 cut(s) 124, 213
BslI CCNNNNNNNGG 2 cut(s) 107, 294
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 124, 213
BsnI GGCC 2 cut(s) 39, 383
Bso31I GGTCTC 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 64
BspACI CCGC 1 cut(s) 429
BspANI GGCC 2 cut(s) 39, 383
BspCNI CTCAG 1 cut(s) 467
BspMAI CTGCAG 1 cut(s) 296
BspT104I TTCGAA 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 454
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 350
BstMAI GTCTC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 349
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 2 cut(s) 39, 383
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 381
CviAII CATG 3 cut(s) 11, 155, 475
CviJI RGCY 4 cut(s) 39, 134, 298, 383
CviKI_1 RGCY 4 cut(s) 39, 134, 298, 383
DdeI CTNAG 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 109
Eco32I GATATC 1 cut(s) 125
EcoRV GATATC 1 cut(s) 125
FaeI CATG 3 cut(s) 14, 158, 478
FaqI GGGAC 2 cut(s) 124, 213
FatI CATG 3 cut(s) 10, 154, 474
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 2 cut(s) 39, 383
Hin1II CATG 3 cut(s) 14, 158, 478
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 4 cut(s) 20, 229, 435, 452
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 178, 461
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 101, 327
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 5 cut(s) 10, 185, 294, 350, 478
HpyF3I CTNAG 1 cut(s) 454
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 3 cut(s) 14, 158, 478
LpnPI CCDG 4 cut(s) 181, 188, 280, 424
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 359
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 328
MboII GAAGA 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 45, 411, 423
MlyI GAGTC 2 cut(s) 429, 446
MmeI TCCRAC 1 cut(s) 439
MseI TTAA 3 cut(s) 27, 410, 499
MslI CAYNNNNRTG 1 cut(s) 15
NlaIII CATG 3 cut(s) 14, 158, 478
NspI RCATGY 1 cut(s) 14
NspV TTCGAA 1 cut(s) 259
PfeI GAWTC 2 cut(s) 20, 229
PflFI GACNNNGTC 1 cut(s) 455
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 2 cut(s) 429, 446
PpsI GAGTC 2 cut(s) 429, 446
PshBI ATTAAT 1 cut(s) 27
PspPI GGNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 455
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 3 cut(s) 27, 410, 499
SatI GCNGC 1 cut(s) 363
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 2 cut(s) 429, 446
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 70, 136, 319, 331, 499
SfaNI GCATC 1 cut(s) 359
SfcI CTRYAG 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 45, 411, 423
SsiI CCGC 1 cut(s) 429
SspMI CTAG 1 cut(s) 266
TaiI ACGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 259
TasI AATT 3 cut(s) 45, 411, 423
TfiI GAWTC 2 cut(s) 20, 229
Tru1I TTAA 3 cut(s) 27, 410, 499
Tru9I TTAA 3 cut(s) 27, 410, 499
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 33, 171
Tth111I GACNNNGTC 1 cut(s) 455
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.