Helitron helicase-like domain at N-terminus
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helitron_like_N | PF14214 | 318 - 383 | 1.2e-11 | Helitron helicase-like domain at N-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1145 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 298 |
| AciI | CCGC | 1 cut(s) | 712 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 4 cut(s) | 338, 609, 1094, 1106 |
| AcyI | GRCGYC | 1 cut(s) | 1012 |
| AfaI | GTAC | 2 cut(s) | 138, 396 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 298, 494 |
| AflIII | ACRYGT | 1 cut(s) | 397 |
| AgsI | TTSAA | 7 cut(s) | 256, 387, 596, 638, 806, 1055, 1124 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 285, 317 |
| AluBI | AGCT | 1 cut(s) | 1066 |
| AluI | AGCT | 1 cut(s) | 1066 |
| Alw21I | GWGCWC | 1 cut(s) | 451 |
| Alw26I | GTCTC | 2 cut(s) | 227, 291 |
| Alw44I | GTGCAC | 1 cut(s) | 447 |
| Ama87I | CYCGRG | 1 cut(s) | 548 |
| AoxI | GGCC | 3 cut(s) | 36, 357, 424 |
| ApaLI | GTGCAC | 1 cut(s) | 447 |
| ApeKI | GCWGC | 1 cut(s) | 749 |
| ApoI | RAATTY | 4 cut(s) | 338, 609, 1094, 1106 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 226, 258 |
| AseI | ATTAAT | 2 cut(s) | 414, 909 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 300, 1095 |
| AspLEI | GCGC | 1 cut(s) | 117 |
| AspS9I | GGNCC | 2 cut(s) | 357, 431 |
| AsuHPI | GGTGA | 2 cut(s) | 296, 779 |
| AsuII | TTCGAA | 1 cut(s) | 646 |
| AvaI | CYCGRG | 1 cut(s) | 548 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| BaeGI | GKGCMC | 1 cut(s) | 451 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BanII | GRGCYC | 1 cut(s) | 96 |
| BbsI | GAAGAC | 3 cut(s) | 84, 508, 937 |
| Bbv12I | GWGCWC | 1 cut(s) | 451 |
| BbvI | GCAGC | 1 cut(s) | 736 |
| BccI | CCATC | 3 cut(s) | 739, 894, 1065 |
| BceAI | ACGGC | 4 cut(s) | 102, 155, 411, 699 |
| BciVI | GTATCC | 1 cut(s) | 879 |
| BclI | TGATCA | 1 cut(s) | 316 |
| BcoDI | GTCTC | 2 cut(s) | 227, 291 |
| BfmI | CTRYAG | 1 cut(s) | 515 |
| BfoI | RGCGCY | 1 cut(s) | 118 |
| BfuAI | ACCTGC | 1 cut(s) | 1145 |
| BfuI | GTATCC | 1 cut(s) | 879 |
| BisI | GCNGC | 1 cut(s) | 750 |
| BlsI | GCNGC | 1 cut(s) | 751 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmeT110I | CYCGRG | 1 cut(s) | 548 |
| BmgT120I | GGNCC | 2 cut(s) | 357, 431 |
| BmsI | GCATC | 3 cut(s) | 746, 963, 1141 |
| BoxI | GACNNNNGTC | 2 cut(s) | 714, 937 |
| BpiI | GAAGAC | 3 cut(s) | 84, 508, 937 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 999, 1031 |
| Bpu14I | TTCGAA | 1 cut(s) | 646 |
| BsaHI | GRCGYC | 1 cut(s) | 1012 |
| BsaI | GGTCTC | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 2 cut(s) | 421, 427 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 298, 494 |
| Bse3DI | GCAATG | 1 cut(s) | 217 |
| BseDI | CCNNGG | 2 cut(s) | 421, 427 |
| BseGI | GGATG | 1 cut(s) | 905 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 298, 494 |
| BseMI | GCAATG | 1 cut(s) | 217 |
| BseMII | CTCAG | 3 cut(s) | 528, 855, 1081 |
| BseRI | GAGGAG | 3 cut(s) | 29, 125, 1020 |
| BseSI | GKGCMC | 1 cut(s) | 451 |
| BseXI | GCAGC | 1 cut(s) | 736 |
| Bsh1285I | CGRYCG | 1 cut(s) | 712 |
| BshFI | GGCC | 3 cut(s) | 38, 359, 426 |
| BsiEI | CGRYCG | 1 cut(s) | 712 |
| BsiHKAI | GWGCWC | 1 cut(s) | 451 |
| BsiHKCI | CYCGRG | 1 cut(s) | 548 |
| BslFI | GGGAC | 1 cut(s) | 917 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 298, 494 |
| BsmAI | GTCTC | 2 cut(s) | 227, 291 |
| BsmFI | GGGAC | 1 cut(s) | 917 |
| BsmI | GAATGC | 1 cut(s) | 377 |
| BsnI | GGCC | 3 cut(s) | 38, 359, 426 |
| Bso31I | GGTCTC | 1 cut(s) | 227 |
| BsoBI | CYCGRG | 1 cut(s) | 548 |
| Bsp119I | TTCGAA | 1 cut(s) | 646 |
| Bsp1286I | GDGCHC | 2 cut(s) | 96, 451 |
| Bsp143I | GATC | 2 cut(s) | 226, 316 |
| BspACI | CCGC | 1 cut(s) | 712 |
| BspANI | GGCC | 3 cut(s) | 38, 359, 426 |
| BspCNI | CTCAG | 3 cut(s) | 529, 854, 1080 |
| BspHI | TCATGA | 4 cut(s) | 10, 106, 150, 985 |
| BspMI | ACCTGC | 1 cut(s) | 1145 |
| BspT104I | TTCGAA | 1 cut(s) | 646 |
| BspTNI | GGTCTC | 1 cut(s) | 227 |
| BsrDI | GCAATG | 1 cut(s) | 217 |
| BssECI | CCNNGG | 2 cut(s) | 421, 427 |
| BssMI | GATC | 2 cut(s) | 226, 316 |
| BssNI | GRCGYC | 1 cut(s) | 1012 |
| BssT1I | CCWWGG | 1 cut(s) | 421 |
| Bst4CI | ACNGT | 3 cut(s) | 26, 285, 1026 |
| Bst6I | CTCTTC | 1 cut(s) | 1022 |
| BstACI | GRCGYC | 1 cut(s) | 1012 |
| BstBI | TTCGAA | 1 cut(s) | 646 |
| BstDEI | CTNAG | 3 cut(s) | 537, 841, 1067 |
| BstDSI | CCRYGG | 1 cut(s) | 427 |
| BstF5I | GGATG | 1 cut(s) | 905 |
| BstH2I | RGCGCY | 1 cut(s) | 118 |
| BstHHI | GCGC | 1 cut(s) | 117 |
| BstKTI | GATC | 2 cut(s) | 229, 319 |
| BstMAI | GTCTC | 2 cut(s) | 227, 291 |
| BstMBI | GATC | 2 cut(s) | 226, 316 |
| BstMCI | CGRYCG | 1 cut(s) | 712 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 207, 1072 |
| BstNSI | RCATGY | 3 cut(s) | 201, 401, 1139 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 714, 937 |
| BstSFI | CTRYAG | 1 cut(s) | 515 |
| BstSLI | GKGCMC | 1 cut(s) | 451 |
| BstV1I | GCAGC | 1 cut(s) | 736 |
| BstV2I | GAAGAC | 3 cut(s) | 84, 508, 937 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 428 |
| BsuI | GTATCC | 1 cut(s) | 879 |
| BsuRI | GGCC | 3 cut(s) | 38, 359, 426 |
| BtgI | CCRYGG | 1 cut(s) | 427 |
| BtsCI | GGATG | 1 cut(s) | 905 |
| BtsIMutI | CAGTG | 1 cut(s) | 534 |
| BveI | ACCTGC | 1 cut(s) | 1145 |
| CciI | TCATGA | 4 cut(s) | 10, 106, 150, 985 |
| CfoI | GCGC | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 2 cut(s) | 357, 431 |
| CseI | GACGC | 2 cut(s) | 965, 1020 |
| Csp6I | GTAC | 2 cut(s) | 137, 395 |
| CviJI | RGCY | 7 cut(s) | 38, 94, 359, 426, 521, 1066, 1075 |
| CviKI_1 | RGCY | 7 cut(s) | 38, 94, 359, 426, 521, 1066, 1075 |
| CviQI | GTAC | 2 cut(s) | 137, 395 |
| DdeI | CTNAG | 3 cut(s) | 537, 841, 1067 |
| DpnI | GATC | 2 cut(s) | 228, 318 |
| DpnII | GATC | 2 cut(s) | 226, 316 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 1 cut(s) | 1022 |
| EarI | CTCTTC | 1 cut(s) | 1022 |
| Eco130I | CCWWGG | 1 cut(s) | 421 |
| Eco24I | GRGCYC | 1 cut(s) | 96 |
| Eco31I | GGTCTC | 1 cut(s) | 227 |
| Eco32I | GATATC | 1 cut(s) | 512 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco88I | CYCGRG | 1 cut(s) | 548 |
| EcoO109I | RGGNCCY | 1 cut(s) | 357 |
| EcoRV | GATATC | 1 cut(s) | 512 |
| EcoT14I | CCWWGG | 1 cut(s) | 421 |
| EcoT22I | ATGCAT | 1 cut(s) | 217 |
| EcoT38I | GRGCYC | 1 cut(s) | 96 |
| ErhI | CCWWGG | 1 cut(s) | 421 |
| FaqI | GGGAC | 1 cut(s) | 917 |
| FbaI | TGATCA | 1 cut(s) | 316 |
| Fnu4HI | GCNGC | 1 cut(s) | 750 |
| FokI | GGATG | 1 cut(s) | 912 |
| FriOI | GRGCYC | 1 cut(s) | 96 |
| Fsp4HI | GCNGC | 1 cut(s) | 750 |
| GlaI | GCGC | 1 cut(s) | 116 |
| GluI | GCNGC | 1 cut(s) | 750 |
| HaeII | RGCGCY | 1 cut(s) | 118 |
| HaeIII | GGCC | 3 cut(s) | 38, 359, 426 |
| HgaI | GACGC | 2 cut(s) | 965, 1020 |
| HhaI | GCGC | 1 cut(s) | 117 |
| Hin1I | GRCGYC | 1 cut(s) | 1012 |
| Hin6I | GCGC | 1 cut(s) | 115 |
| HinP1I | GCGC | 1 cut(s) | 115 |
| HinfI | GANTC | 4 cut(s) | 684, 839, 1055, 1127 |
| HphI | GGTGA | 2 cut(s) | 296, 779 |
| Hpy166II | GTNNAC | 4 cut(s) | 304, 431, 449, 818 |
| Hpy188I | TCNGA | 7 cut(s) | 316, 344, 565, 695, 709, 1070, 1101 |
| Hpy188III | TCNNGA | 9 cut(s) | 11, 107, 151, 230, 550, 665, 986, 1088, 1124 |
| Hpy8I | GTNNAC | 4 cut(s) | 304, 431, 449, 818 |
| HpyAV | CCTTC | 2 cut(s) | 250, 714 |
| HpyCH4III | ACNGT | 3 cut(s) | 26, 285, 1026 |
| HpyCH4IV | ACGT | 2 cut(s) | 440, 661 |
| HpyCH4V | TGCA | 9 cut(s) | 210, 215, 377, 449, 681, 737, 865, 1139, 1154 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 207, 1072 |
| HpyF3I | CTNAG | 3 cut(s) | 537, 841, 1067 |
| HpySE526I | ACGT | 2 cut(s) | 440, 661 |
| Hsp92I | GRCGYC | 1 cut(s) | 1012 |
| HspAI | GCGC | 1 cut(s) | 115 |
| Ksp22I | TGATCA | 1 cut(s) | 316 |
| Kzo9I | GATC | 2 cut(s) | 226, 316 |
| LmnI | GCTCC | 2 cut(s) | 16, 112 |
| LpnPI | CCDG | 3 cut(s) | 503, 1125, 1140 |
| Lsp1109I | GCAGC | 1 cut(s) | 736 |
| LweI | GCATC | 3 cut(s) | 746, 963, 1141 |
| MaeII | ACGT | 2 cut(s) | 440, 661 |
| MaeIII | GTNAC | 4 cut(s) | 26, 119, 767, 966 |
| MalI | GATC | 2 cut(s) | 228, 318 |
| MboI | GATC | 2 cut(s) | 226, 316 |
| MboII | GAAGA | 4 cut(s) | 89, 513, 942, 1009 |
| MfeI | CAATTG | 3 cut(s) | 179, 489, 676 |
| MhlI | GDGCHC | 2 cut(s) | 96, 451 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 3 cut(s) | 678, 833, 1121 |
| MmeI | TCCRAC | 3 cut(s) | 732, 826, 1045 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| Mph1103I | ATGCAT | 1 cut(s) | 217 |
| MroXI | GAANNNNTTC | 2 cut(s) | 300, 1095 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 414, 615, 909 |
| MslI | CAYNNNNRTG | 3 cut(s) | 386, 402, 898 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MunI | CAATTG | 3 cut(s) | 179, 489, 676 |
| Mva1269I | GAATGC | 1 cut(s) | 377 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 207, 1072 |
| NdeII | GATC | 2 cut(s) | 226, 316 |
| NmuCI | GTSAC | 1 cut(s) | 767 |
| NsiI | ATGCAT | 1 cut(s) | 217 |
| NspI | RCATGY | 3 cut(s) | 201, 401, 1139 |
| NspV | TTCGAA | 1 cut(s) | 646 |
| PaeR7I | CTCGAG | 1 cut(s) | 548 |
| PagI | TCATGA | 4 cut(s) | 10, 106, 150, 985 |
| PciI | ACATGT | 1 cut(s) | 397 |
| PctI | GAATGC | 1 cut(s) | 377 |
| PdmI | GAANNNNTTC | 2 cut(s) | 300, 1095 |
| PfeI | GAWTC | 1 cut(s) | 1055 |
| PflFI | GACNNNGTC | 1 cut(s) | 660 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 298 |
| PkrI | GCNGC | 1 cut(s) | 751 |
| PleI | GAGTC | 3 cut(s) | 678, 833, 1121 |
| PpsI | GAGTC | 3 cut(s) | 678, 833, 1121 |
| PscI | ACATGT | 1 cut(s) | 397 |
| PshAI | GACNNNNGTC | 2 cut(s) | 714, 937 |
| PshBI | ATTAAT | 2 cut(s) | 414, 909 |
| PspPI | GGNCC | 2 cut(s) | 357, 431 |
| PsyI | GACNNNGTC | 1 cut(s) | 660 |
| RsaI | GTAC | 2 cut(s) | 138, 396 |
| RsaNI | GTAC | 2 cut(s) | 137, 395 |
| RseI | CAYNNNNRTG | 3 cut(s) | 386, 402, 898 |
| SaqAI | TTAA | 3 cut(s) | 414, 615, 909 |
| SatI | GCNGC | 1 cut(s) | 750 |
| Sau3AI | GATC | 2 cut(s) | 226, 316 |
| Sau96I | GGNCC | 2 cut(s) | 357, 431 |
| SchI | GAGTC | 3 cut(s) | 678, 833, 1121 |
| SduI | GDGCHC | 2 cut(s) | 96, 451 |
| SfaNI | GCATC | 3 cut(s) | 746, 963, 1141 |
| SfcI | CTRYAG | 1 cut(s) | 515 |
| Sfr274I | CTCGAG | 1 cut(s) | 548 |
| SfuI | TTCGAA | 1 cut(s) | 646 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SlaI | CTCGAG | 1 cut(s) | 548 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 386, 402, 898 |
| SmlI | CTYRAG | 1 cut(s) | 548 |
| SmoI | CTYRAG | 1 cut(s) | 548 |
| SsiI | CCGC | 1 cut(s) | 712 |
| SspI | AATATT | 2 cut(s) | 265, 352 |
| StyI | CCWWGG | 1 cut(s) | 421 |
| TaaI | ACNGT | 3 cut(s) | 26, 285, 1026 |
| TaiI | ACGT | 2 cut(s) | 443, 664 |
| TaqI | TCGA | 4 cut(s) | 229, 549, 646, 1003 |
| TfiI | GAWTC | 1 cut(s) | 1055 |
| Tru1I | TTAA | 3 cut(s) | 414, 615, 909 |
| Tru9I | TTAA | 3 cut(s) | 414, 615, 909 |
| TscAI | CASTG | 1 cut(s) | 541 |
| TseFI | GTSAC | 1 cut(s) | 767 |
| TseI | GCWGC | 1 cut(s) | 749 |
| Tsp45I | GTSAC | 1 cut(s) | 767 |
| TspDTI | ATGAA | 9 cut(s) | 17, 56, 99, 113, 119, 139, 420, 558, 1002 |
| TspGWI | ACGGA | 2 cut(s) | 861, 912 |
| TspRI | CASTG | 1 cut(s) | 541 |
| Tth111I | GACNNNGTC | 1 cut(s) | 660 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 298 |
| VneI | GTGCAC | 1 cut(s) | 447 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| VspI | ATTAAT | 2 cut(s) | 414, 909 |
| XapI | RAATTY | 4 cut(s) | 338, 609, 1094, 1106 |
| XceI | RCATGY | 3 cut(s) | 201, 401, 1139 |
| XhoI | CTCGAG | 1 cut(s) | 548 |
| XmnI | GAANNNNTTC | 2 cut(s) | 300, 1095 |
| Zsp2I | ATGCAT | 1 cut(s) | 217 |