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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 351, 561, 640 |
| AccIII | TCCGGA | 1 cut(s) | 572 |
| AciI | CCGC | 3 cut(s) | 349, 351, 638 |
| AcsI | RAATTY | 4 cut(s) | 71, 298, 520, 595 |
| AcuI | CTGAAG | 1 cut(s) | 557 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 365, 443 |
| AgsI | TTSAA | 2 cut(s) | 34, 525 |
| AjiI | CACGTC | 1 cut(s) | 307 |
| AluBI | AGCT | 1 cut(s) | 541 |
| AluI | AGCT | 1 cut(s) | 541 |
| Alw21I | GWGCWC | 1 cut(s) | 385 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 136 |
| Ama87I | CYCGRG | 1 cut(s) | 437 |
| Aor13HI | TCCGGA | 1 cut(s) | 572 |
| ApoI | RAATTY | 4 cut(s) | 71, 298, 520, 595 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 508 |
| AspLEI | GCGC | 2 cut(s) | 563, 642 |
| AsuC2I | CCSGG | 2 cut(s) | 438, 439 |
| AsuII | TTCGAA | 1 cut(s) | 317 |
| AvaI | CYCGRG | 1 cut(s) | 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 385 |
| BbvCI | CCTCAGC | 1 cut(s) | 584 |
| BccI | CCATC | 1 cut(s) | 597 |
| BclI | TGATCA | 1 cut(s) | 127 |
| BcnI | CCSGG | 2 cut(s) | 438, 439 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfaI | CTAG | 2 cut(s) | 378, 420 |
| BisI | GCNGC | 1 cut(s) | 349 |
| BlsI | GCNGC | 1 cut(s) | 350 |
| Bme1390I | CCNGG | 2 cut(s) | 438, 439 |
| BmeT110I | CYCGRG | 1 cut(s) | 437 |
| BmgBI | CACGTC | 1 cut(s) | 307 |
| BmrFI | CCNGG | 2 cut(s) | 438, 439 |
| BmsI | GCATC | 2 cut(s) | 203, 266 |
| Bpu10I | CCTNAGC | 1 cut(s) | 584 |
| Bpu14I | TTCGAA | 1 cut(s) | 317 |
| BpuMI | CCSGG | 2 cut(s) | 438, 439 |
| BsaBI | GATNNNNATC | 1 cut(s) | 132 |
| BsaJI | CCNNGG | 4 cut(s) | 156, 349, 437, 438 |
| BsaWI | WCCGGW | 1 cut(s) | 572 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 365, 443 |
| Bse1I | ACTGG | 1 cut(s) | 203 |
| Bse8I | GATNNNNATC | 1 cut(s) | 132 |
| BseAI | TCCGGA | 1 cut(s) | 572 |
| BseDI | CCNNGG | 4 cut(s) | 156, 349, 437, 438 |
| BseJI | GATNNNNATC | 1 cut(s) | 132 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 365, 443 |
| BseMII | CTCAG | 3 cut(s) | 189, 399, 598 |
| BseNI | ACTGG | 1 cut(s) | 203 |
| BseRI | GAGGAG | 1 cut(s) | 348 |
| Bsh1236I | CGCG | 3 cut(s) | 351, 561, 640 |
| Bsh1285I | CGRYCG | 1 cut(s) | 292 |
| BsiEI | CGRYCG | 1 cut(s) | 292 |
| BsiHKAI | GWGCWC | 1 cut(s) | 385 |
| BsiHKCI | CYCGRG | 1 cut(s) | 437 |
| BsiSI | CCGG | 3 cut(s) | 438, 573, 626 |
| BslFI | GGGAC | 1 cut(s) | 476 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 365, 443 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 1 cut(s) | 476 |
| BsmI | GAATGC | 1 cut(s) | 123 |
| BsoBI | CYCGRG | 1 cut(s) | 437 |
| Bsp119I | TTCGAA | 1 cut(s) | 317 |
| Bsp1286I | GDGCHC | 1 cut(s) | 385 |
| Bsp13I | TCCGGA | 1 cut(s) | 572 |
| Bsp143I | GATC | 3 cut(s) | 3, 127, 289 |
| Bsp19I | CCATGG | 1 cut(s) | 156 |
| BspACI | CCGC | 3 cut(s) | 349, 351, 638 |
| BspCNI | CTCAG | 3 cut(s) | 190, 400, 597 |
| BspEI | TCCGGA | 1 cut(s) | 572 |
| BspFNI | CGCG | 3 cut(s) | 351, 561, 640 |
| BspT104I | TTCGAA | 1 cut(s) | 317 |
| BsrI | ACTGG | 1 cut(s) | 203 |
| BssECI | CCNNGG | 4 cut(s) | 156, 349, 437, 438 |
| BssMI | GATC | 3 cut(s) | 3, 127, 289 |
| BssT1I | CCWWGG | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 2 cut(s) | 40, 98 |
| Bst6I | CTCTTC | 1 cut(s) | 442 |
| BstBI | TTCGAA | 1 cut(s) | 317 |
| BstDEI | CTNAG | 3 cut(s) | 198, 408, 584 |
| BstDSI | CCRYGG | 2 cut(s) | 156, 349 |
| BstFNI | CGCG | 3 cut(s) | 351, 561, 640 |
| BstHHI | GCGC | 2 cut(s) | 563, 642 |
| BstKTI | GATC | 3 cut(s) | 6, 130, 292 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 3 cut(s) | 3, 127, 289 |
| BstMCI | CGRYCG | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 395, 648 |
| BstSCI | CCNGG | 2 cut(s) | 436, 437 |
| BstUI | CGCG | 3 cut(s) | 351, 561, 640 |
| BtgI | CCRYGG | 2 cut(s) | 156, 349 |
| BtrI | CACGTC | 1 cut(s) | 307 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 210 |
| CaiI | CAGNNNCTG | 1 cut(s) | 136 |
| CfoI | GCGC | 2 cut(s) | 563, 642 |
| Cfr42I | CCGCGG | 1 cut(s) | 352 |
| Cfr9I | CCCGGG | 1 cut(s) | 437 |
| CviAII | CATG | 3 cut(s) | 151, 157, 365 |
| CviJI | RGCY | 6 cut(s) | 202, 436, 541, 588, 634, 651 |
| CviKI_1 | RGCY | 6 cut(s) | 202, 436, 541, 588, 634, 651 |
| DdeI | CTNAG | 3 cut(s) | 198, 408, 584 |
| DpnI | GATC | 3 cut(s) | 5, 129, 291 |
| DpnII | GATC | 3 cut(s) | 3, 127, 289 |
| Eam1104I | CTCTTC | 1 cut(s) | 442 |
| EarI | CTCTTC | 1 cut(s) | 442 |
| Eco130I | CCWWGG | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 1 cut(s) | 557 |
| Eco88I | CYCGRG | 1 cut(s) | 437 |
| EcoRI | GAATTC | 1 cut(s) | 520 |
| EcoT14I | CCWWGG | 1 cut(s) | 156 |
| EcoT22I | ATGCAT | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 156 |
| FaeI | CATG | 3 cut(s) | 154, 160, 368 |
| FaiI | YATR | 4 cut(s) | 152, 158, 346, 366 |
| FaqI | GGGAC | 1 cut(s) | 476 |
| FatI | CATG | 3 cut(s) | 150, 156, 364 |
| FauI | CCCGC | 1 cut(s) | 645 |
| FbaI | TGATCA | 1 cut(s) | 127 |
| Fnu4HI | GCNGC | 1 cut(s) | 349 |
| Fsp4HI | GCNGC | 1 cut(s) | 349 |
| FspBI | CTAG | 2 cut(s) | 378, 420 |
| GlaI | GCGC | 2 cut(s) | 562, 641 |
| GluI | GCNGC | 1 cut(s) | 349 |
| HapII | CCGG | 3 cut(s) | 438, 573, 626 |
| HhaI | GCGC | 2 cut(s) | 563, 642 |
| Hin1II | CATG | 3 cut(s) | 154, 160, 368 |
| Hin6I | GCGC | 2 cut(s) | 561, 640 |
| HinP1I | GCGC | 2 cut(s) | 561, 640 |
| HindIII | AAGCTT | 1 cut(s) | 539 |
| HinfI | GANTC | 4 cut(s) | 133, 220, 548, 556 |
| HpaII | CCGG | 3 cut(s) | 438, 573, 626 |
| Hpy188I | TCNGA | 6 cut(s) | 132, 138, 199, 225, 304, 594 |
| Hpy188III | TCNNGA | 5 cut(s) | 232, 429, 545, 573, 617 |
| Hpy99I | CGWCG | 1 cut(s) | 556 |
| HpyAV | CCTTC | 2 cut(s) | 325, 677 |
| HpyCH4III | ACNGT | 2 cut(s) | 40, 98 |
| HpyCH4IV | ACGT | 2 cut(s) | 227, 306 |
| HpyCH4V | TGCA | 2 cut(s) | 257, 389 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 395, 648 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 408, 584 |
| HpySE526I | ACGT | 2 cut(s) | 227, 306 |
| Hsp92II | CATG | 3 cut(s) | 154, 160, 368 |
| HspAI | GCGC | 2 cut(s) | 561, 640 |
| Kpn2I | TCCGGA | 1 cut(s) | 572 |
| Ksp22I | TGATCA | 1 cut(s) | 127 |
| KspI | CCGCGG | 1 cut(s) | 352 |
| Kzo9I | GATC | 3 cut(s) | 3, 127, 289 |
| LpnPI | CCDG | 8 cut(s) | 216, 380, 451, 498, 514, 558, 586, 639 |
| LweI | GCATC | 2 cut(s) | 203, 266 |
| MaeI | CTAG | 2 cut(s) | 378, 420 |
| MaeII | ACGT | 2 cut(s) | 227, 306 |
| MalI | GATC | 3 cut(s) | 5, 129, 291 |
| MboI | GATC | 3 cut(s) | 3, 127, 289 |
| MboII | GAAGA | 4 cut(s) | 180, 306, 459, 666 |
| MhlI | GDGCHC | 1 cut(s) | 385 |
| MluCI | AATT | 4 cut(s) | 71, 298, 520, 595 |
| MlyI | GAGTC | 1 cut(s) | 550 |
| MmeI | TCCRAC | 1 cut(s) | 497 |
| MnlI | CCTC | 9 cut(s) | 74, 101, 268, 369, 403, 443, 453, 488, 593 |
| Mph1103I | ATGCAT | 1 cut(s) | 259 |
| MroI | TCCGGA | 1 cut(s) | 572 |
| MroXI | GAANNNNTTC | 1 cut(s) | 508 |
| MseI | TTAA | 2 cut(s) | 123, 209 |
| MslI | CAYNNNNRTG | 1 cut(s) | 155 |
| MspA1I | CMGCKG | 1 cut(s) | 351 |
| MspI | CCGG | 3 cut(s) | 438, 573, 626 |
| MspR9I | CCNGG | 2 cut(s) | 438, 439 |
| Mva1269I | GAATGC | 1 cut(s) | 123 |
| MvnI | CGCG | 3 cut(s) | 351, 561, 640 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 395, 648 |
| NciI | CCSGG | 2 cut(s) | 438, 439 |
| NcoI | CCATGG | 1 cut(s) | 156 |
| NdeII | GATC | 3 cut(s) | 3, 127, 289 |
| NlaIII | CATG | 3 cut(s) | 154, 160, 368 |
| NsiI | ATGCAT | 1 cut(s) | 259 |
| NspV | TTCGAA | 1 cut(s) | 317 |
| PctI | GAATGC | 1 cut(s) | 123 |
| PdmI | GAANNNNTTC | 1 cut(s) | 508 |
| PfeI | GAWTC | 3 cut(s) | 133, 220, 548 |
| PkrI | GCNGC | 1 cut(s) | 350 |
| Ple19I | CGATCG | 1 cut(s) | 292 |
| PleI | GAGTC | 1 cut(s) | 550 |
| PpsI | GAGTC | 1 cut(s) | 550 |
| PstNI | CAGNNNCTG | 1 cut(s) | 136 |
| PvuI | CGATCG | 1 cut(s) | 292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 155 |
| SacII | CCGCGG | 1 cut(s) | 352 |
| SaqAI | TTAA | 2 cut(s) | 123, 209 |
| SatI | GCNGC | 1 cut(s) | 349 |
| Sau3AI | GATC | 3 cut(s) | 3, 127, 289 |
| SchI | GAGTC | 1 cut(s) | 550 |
| ScrFI | CCNGG | 2 cut(s) | 438, 439 |
| SduI | GDGCHC | 1 cut(s) | 385 |
| SetI | ASST | 6 cut(s) | 185, 230, 309, 454, 543, 666 |
| SfaNI | GCATC | 2 cut(s) | 203, 266 |
| Sfr303I | CCGCGG | 1 cut(s) | 352 |
| SfuI | TTCGAA | 1 cut(s) | 317 |
| SgrBI | CCGCGG | 1 cut(s) | 352 |
| SmaI | CCCGGG | 1 cut(s) | 439 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 155 |
| Sse9I | AATT | 4 cut(s) | 71, 298, 520, 595 |
| SsiI | CCGC | 3 cut(s) | 349, 351, 638 |
| SspMI | CTAG | 2 cut(s) | 378, 420 |
| StyD4I | CCNGG | 2 cut(s) | 436, 437 |
| StyI | CCWWGG | 1 cut(s) | 156 |
| TaaI | ACNGT | 2 cut(s) | 40, 98 |
| TaiI | ACGT | 2 cut(s) | 230, 309 |
| TaqI | TCGA | 7 cut(s) | 15, 231, 292, 317, 361, 551, 618 |
| TasI | AATT | 4 cut(s) | 71, 298, 520, 595 |
| TauI | GCSGC | 1 cut(s) | 351 |
| TfiI | GAWTC | 3 cut(s) | 133, 220, 548 |
| Tru1I | TTAA | 2 cut(s) | 123, 209 |
| Tru9I | TTAA | 2 cut(s) | 123, 209 |
| TscAI | CASTG | 2 cut(s) | 45, 210 |
| TspDTI | ATGAA | 3 cut(s) | 258, 598, 689 |
| TspGWI | ACGGA | 2 cut(s) | 417, 495 |
| TspMI | CCCGGG | 1 cut(s) | 437 |
| TspRI | CASTG | 2 cut(s) | 45, 210 |
| XapI | RAATTY | 4 cut(s) | 71, 298, 520, 595 |
| XmaI | CCCGGG | 1 cut(s) | 437 |
| XmnI | GAANNNNTTC | 1 cut(s) | 508 |
| XspI | CTAG | 2 cut(s) | 378, 420 |
| Zsp2I | ATGCAT | 1 cut(s) | 259 |