modification-dependent protein catabolic process
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Skp1_POZ | PF03931 | 17 - 65 | 2.1e-12 | Skp1 family, tetramerisation domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 162 |
| AciI | CCGC | 2 cut(s) | 101, 160 |
| AclWI | GGATC | 1 cut(s) | 166 |
| AcoI | YGGCCR | 2 cut(s) | 193, 346 |
| AdeI | CACNNNGTG | 1 cut(s) | 278 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 212 |
| AgsI | TTSAA | 3 cut(s) | 44, 95, 374 |
| AluBI | AGCT | 1 cut(s) | 329 |
| AluI | AGCT | 1 cut(s) | 329 |
| Alw26I | GTCTC | 1 cut(s) | 74 |
| AlwI | GGATC | 1 cut(s) | 166 |
| AoxI | GGCC | 3 cut(s) | 108, 193, 346 |
| AspLEI | GCGC | 1 cut(s) | 159 |
| AspS9I | GGNCC | 3 cut(s) | 66, 109, 145 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| AvaII | GGWCC | 2 cut(s) | 66, 145 |
| AxyI | CCTNAGG | 1 cut(s) | 62 |
| BalI | TGGCCA | 1 cut(s) | 348 |
| BccI | CCATC | 1 cut(s) | 68 |
| BceAI | ACGGC | 1 cut(s) | 338 |
| BcoDI | GTCTC | 1 cut(s) | 74 |
| BfaI | CTAG | 2 cut(s) | 35, 207 |
| BisI | GCNGC | 1 cut(s) | 160 |
| BlsI | GCNGC | 1 cut(s) | 161 |
| Bme18I | GGWCC | 2 cut(s) | 66, 145 |
| BmgT120I | GGNCC | 3 cut(s) | 66, 109, 145 |
| BmsI | GCATC | 1 cut(s) | 242 |
| Bsa29I | ATCGAT | 2 cut(s) | 220, 224 |
| BsaJI | CCNNGG | 2 cut(s) | 177, 211 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 212 |
| Bse118I | RCCGGY | 1 cut(s) | 191 |
| Bse21I | CCTNAGG | 1 cut(s) | 62 |
| BseCI | ATCGAT | 2 cut(s) | 220, 224 |
| BseDI | CCNNGG | 2 cut(s) | 177, 211 |
| BseGI | GGATG | 1 cut(s) | 320 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 212 |
| BseMII | CTCAG | 1 cut(s) | 76 |
| BseYI | CCCAGC | 1 cut(s) | 329 |
| Bsh1236I | CGCG | 1 cut(s) | 162 |
| Bsh1285I | CGRYCG | 1 cut(s) | 224 |
| BshFI | GGCC | 3 cut(s) | 110, 195, 348 |
| BshVI | ATCGAT | 2 cut(s) | 220, 224 |
| BsiEI | CGRYCG | 1 cut(s) | 224 |
| BsiSI | CCGG | 1 cut(s) | 192 |
| BslFI | GGGAC | 3 cut(s) | 346, 391, 419 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 212 |
| BsmAI | GTCTC | 1 cut(s) | 74 |
| BsmFI | GGGAC | 3 cut(s) | 346, 391, 419 |
| BsnI | GGCC | 3 cut(s) | 110, 195, 348 |
| Bsp143I | GATC | 3 cut(s) | 126, 171, 221 |
| BspACI | CCGC | 2 cut(s) | 101, 160 |
| BspANI | GGCC | 3 cut(s) | 110, 195, 348 |
| BspCNI | CTCAG | 1 cut(s) | 75 |
| BspDI | ATCGAT | 2 cut(s) | 220, 224 |
| BspFNI | CGCG | 1 cut(s) | 162 |
| BspPI | GGATC | 1 cut(s) | 166 |
| BsrFI | RCCGGY | 1 cut(s) | 191 |
| BssAI | RCCGGY | 1 cut(s) | 191 |
| BssECI | CCNNGG | 2 cut(s) | 177, 211 |
| BssMI | GATC | 3 cut(s) | 126, 171, 221 |
| BssT1I | CCWWGG | 2 cut(s) | 177, 211 |
| Bst4CI | ACNGT | 1 cut(s) | 382 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 2 cut(s) | 197, 327 |
| BstDEI | CTNAG | 1 cut(s) | 62 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 210 |
| BstF5I | GGATG | 1 cut(s) | 320 |
| BstFNI | CGCG | 1 cut(s) | 162 |
| BstHHI | GCGC | 1 cut(s) | 159 |
| BstKTI | GATC | 3 cut(s) | 129, 174, 224 |
| BstMAI | GTCTC | 1 cut(s) | 74 |
| BstMBI | GATC | 3 cut(s) | 126, 171, 221 |
| BstMCI | CGRYCG | 1 cut(s) | 224 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 107 |
| BstUI | CGCG | 1 cut(s) | 162 |
| Bsu15I | ATCGAT | 2 cut(s) | 220, 224 |
| Bsu36I | CCTNAGG | 1 cut(s) | 62 |
| BsuRI | GGCC | 3 cut(s) | 110, 195, 348 |
| BsuTUI | ATCGAT | 2 cut(s) | 220, 224 |
| BtgZI | GCGATG | 1 cut(s) | 219 |
| BtsCI | GGATG | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 2 cut(s) | 197, 327 |
| CfoI | GCGC | 1 cut(s) | 159 |
| Cfr10I | RCCGGY | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 3 cut(s) | 66, 109, 145 |
| ClaI | ATCGAT | 2 cut(s) | 220, 224 |
| CviAII | CATG | 3 cut(s) | 136, 298, 386 |
| CviJI | RGCY | 7 cut(s) | 110, 195, 205, 210, 329, 348, 353 |
| CviKI_1 | RGCY | 7 cut(s) | 110, 195, 205, 210, 329, 348, 353 |
| DdeI | CTNAG | 1 cut(s) | 62 |
| DpnI | GATC | 3 cut(s) | 128, 173, 223 |
| DpnII | GATC | 3 cut(s) | 126, 171, 221 |
| DraIII | CACNNNGTG | 1 cut(s) | 278 |
| EaeI | YGGCCR | 2 cut(s) | 193, 346 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| Eco130I | CCWWGG | 2 cut(s) | 177, 211 |
| Eco47I | GGWCC | 2 cut(s) | 66, 145 |
| Eco81I | CCTNAGG | 1 cut(s) | 62 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 210 |
| EcoO109I | RGGNCCY | 1 cut(s) | 66 |
| EcoT14I | CCWWGG | 2 cut(s) | 177, 211 |
| ErhI | CCWWGG | 2 cut(s) | 177, 211 |
| FaeI | CATG | 3 cut(s) | 139, 301, 389 |
| FaiI | YATR | 5 cut(s) | 137, 299, 358, 387, 415 |
| FaqI | GGGAC | 3 cut(s) | 346, 391, 419 |
| FatI | CATG | 3 cut(s) | 135, 297, 385 |
| Fnu4HI | GCNGC | 1 cut(s) | 160 |
| FokI | GGATG | 1 cut(s) | 327 |
| Fsp4HI | GCNGC | 1 cut(s) | 160 |
| FspBI | CTAG | 2 cut(s) | 35, 207 |
| GlaI | GCGC | 1 cut(s) | 158 |
| GluI | GCNGC | 1 cut(s) | 160 |
| GsaI | CCCAGC | 1 cut(s) | 333 |
| HaeIII | GGCC | 3 cut(s) | 110, 195, 348 |
| HapII | CCGG | 1 cut(s) | 192 |
| HhaI | GCGC | 1 cut(s) | 159 |
| Hin1II | CATG | 3 cut(s) | 139, 301, 389 |
| Hin6I | GCGC | 1 cut(s) | 157 |
| HinP1I | GCGC | 1 cut(s) | 157 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HinfI | GANTC | 1 cut(s) | 440 |
| HpaII | CCGG | 1 cut(s) | 192 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 320 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 250 |
| Hpy188III | TCNNGA | 1 cut(s) | 64 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 320 |
| Hpy99I | CGWCG | 1 cut(s) | 153 |
| HpyAV | CCTTC | 1 cut(s) | 253 |
| HpyCH4III | ACNGT | 1 cut(s) | 382 |
| HpyCH4IV | ACGT | 1 cut(s) | 186 |
| HpyCH4V | TGCA | 2 cut(s) | 297, 385 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 107 |
| HpyF3I | CTNAG | 1 cut(s) | 62 |
| HpySE526I | ACGT | 1 cut(s) | 186 |
| Hsp92II | CATG | 3 cut(s) | 139, 301, 389 |
| HspAI | GCGC | 1 cut(s) | 157 |
| Kzo9I | GATC | 3 cut(s) | 126, 171, 221 |
| LpnPI | CCDG | 5 cut(s) | 49, 115, 205, 209, 315 |
| LweI | GCATC | 1 cut(s) | 242 |
| MaeI | CTAG | 2 cut(s) | 35, 207 |
| MaeII | ACGT | 1 cut(s) | 186 |
| MaeIII | GTNAC | 1 cut(s) | 187 |
| MalI | GATC | 3 cut(s) | 128, 173, 223 |
| MboI | GATC | 3 cut(s) | 126, 171, 221 |
| MboII | GAAGA | 3 cut(s) | 31, 34, 107 |
| MlsI | TGGCCA | 1 cut(s) | 348 |
| MluCI | AATT | 4 cut(s) | 12, 39, 304, 342 |
| MluNI | TGGCCA | 1 cut(s) | 348 |
| MnlI | CCTC | 6 cut(s) | 71, 79, 91, 136, 249, 364 |
| Mox20I | TGGCCA | 1 cut(s) | 348 |
| MscI | TGGCCA | 1 cut(s) | 348 |
| MseI | TTAA | 2 cut(s) | 114, 266 |
| Msp20I | TGGCCA | 1 cut(s) | 348 |
| MspI | CCGG | 1 cut(s) | 192 |
| MvnI | CGCG | 1 cut(s) | 162 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 107 |
| NdeII | GATC | 3 cut(s) | 126, 171, 221 |
| NlaIII | CATG | 3 cut(s) | 139, 301, 389 |
| NmuCI | GTSAC | 1 cut(s) | 187 |
| PfeI | GAWTC | 1 cut(s) | 440 |
| PkrI | GCNGC | 1 cut(s) | 161 |
| Ple19I | CGATCG | 1 cut(s) | 224 |
| PpuMI | RGGWCCY | 1 cut(s) | 66 |
| Psp5II | RGGWCCY | 1 cut(s) | 66 |
| PspFI | CCCAGC | 1 cut(s) | 329 |
| PspPI | GGNCC | 3 cut(s) | 66, 109, 145 |
| PspPPI | RGGWCCY | 1 cut(s) | 66 |
| PvuI | CGATCG | 1 cut(s) | 224 |
| SaqAI | TTAA | 2 cut(s) | 114, 266 |
| SatI | GCNGC | 1 cut(s) | 160 |
| Sau3AI | GATC | 3 cut(s) | 126, 171, 221 |
| Sau96I | GGNCC | 3 cut(s) | 66, 109, 145 |
| SetI | ASST | 5 cut(s) | 71, 189, 217, 280, 331 |
| SfaNI | GCATC | 1 cut(s) | 242 |
| SinI | GGWCC | 2 cut(s) | 66, 145 |
| Sse9I | AATT | 4 cut(s) | 12, 39, 304, 342 |
| SsiI | CCGC | 2 cut(s) | 101, 160 |
| SspMI | CTAG | 2 cut(s) | 35, 207 |
| StyI | CCWWGG | 2 cut(s) | 177, 211 |
| TaaI | ACNGT | 1 cut(s) | 382 |
| TaiI | ACGT | 1 cut(s) | 189 |
| TaqI | TCGA | 3 cut(s) | 87, 220, 224 |
| TaqII | GACCGA | 1 cut(s) | 162 |
| TasI | AATT | 4 cut(s) | 12, 39, 304, 342 |
| TauI | GCSGC | 1 cut(s) | 162 |
| TfiI | GAWTC | 1 cut(s) | 440 |
| Tru1I | TTAA | 2 cut(s) | 114, 266 |
| Tru9I | TTAA | 2 cut(s) | 114, 266 |
| TseFI | GTSAC | 1 cut(s) | 187 |
| Tsp45I | GTSAC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 2 cut(s) | 314, 453 |
| VpaK11BI | GGWCC | 2 cut(s) | 66, 145 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 210 |
| XspI | CTAG | 2 cut(s) | 35, 207 |