RchiOBHm_Chr5g0066551

Helitron helicase-like domain at N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000080
Physical Location & Seq
Forward (+)
72701441 .. 72704632
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34231

Sequence Viewer

Length: 2376 bp
ATGACAGTGTTTTGCCGAGAGATTAATGAAAAAGATAATCAATGTCAGAGTGAGACCGAATTCAGAGATCAACGTTCGCGACTATTTGGTCAAGCGTCATATCAACAAAACAGACAAGGGTTAACTGTGAAATACGAAGACTCGGGGGATAATGTGTACTCATGTAACCATTGTGATGCATGCTTTTGGCTTGGAGAAGCTATTAAAAGATCAACTTCAAATGCATCAATTATCTATACAAATTGTTGTAGGAAAGGCGAAATCAAACTTGAAAGATCAAAACCAACACCAACTTTCCTCGAGCATTTATTGAATCCAGACAATGGTTCAGAAAGCAGATCATTCAGAGAAAACATAAGAATTTATAATTCAATGTTTGCTTTCACATCAATGGGAGCAAATATTGACTACAAAATAAATAATGGTTTAGGTCCTTATGTTTTCAAAATTAGTGGTCAAGTACATCATTTAATGGGTTCTTTATTACCCTCTAATGGAGAATCTCCTAAATATGCTCAACTATATATATACGATACAAAAAATGAAGTTTCAAATCGCATTAATGCAATTGATCCGAATCACAATAATGTGAATATCAAATCAAATATAGTTGAAGGACTCATTAAAATGTTTGACCAAAATAATGAATTAGTAAAAGAATTTCGGACTATAAGAGATAGATATGAAAATGGTTTCATTCCTACATTAAATATGACTATACTTAATCGTCAACCTACTGATAGCAAACAATATGAAACACCAACCAGTGAAGAAATCGATGGTTTAATTGTTGGTGATATTGGACAACATAATTCAAATAAAGATTTAATTATTGAATCAAAAAGTGGTTGTTTACAACGTATTTCTAAAATACATCCAAAATACATGTCATTACAATATCCAATACTTTTTCCATATGGTGAAGATGGATATAAACCGAATTTACCAATAGAGCAAATACCTGGAAATTCTATAAAAAAAAGAAAACGAATATCTATGCGAGCATACATTGCGTATCAAATCCAAGACCGAAATAATGAAGTAAAAACTTTATTAAAAGGTGGACGTTTATTTCAACAATTTTTAGTAGATTCTTATGCAACAGTTGAAGAAGACCGTTTAGATTGGATTAGAAGAAATCAAAAGAATTTTCGTAGTGAAATATATAAAGAACTTTGTACTTCAGCTACAGCAGGAATTAATAAAGCATCCAATTTAGGACAAAAAATAATTCTACCGAGTTCTTATACTGGAAGTCCTAGAGATATGATTAATAATTATCAAGATGCTATGGCAATTTGTAGACAATATGGTAATCCTGATTTATTCATTACTTTTACTTGCAATGTTAAATGGATAGAAATTGAAAGATATTTTCAAAATCAACCTGAATATAAAATTGAAGATAGACCAGATATAATTTCAAGAATCTTTAAAATAAAATTAGAAGATATGATGACTTATATTAAATCTGGAGAACCTTTTGGAGAAATTGATGCATATGTGCATACAATAGAATTTCAAAAAAGAGGACTTCCTCATGCTCATATGTTATTTTGGTTAAAAAAGGATTATAAATGTTATACAGCCGCTGATGTTGATTCTATTATTTCAGCAGAATTACCAGATAAAAATGTAAACCCAGAATTATACAGAATTGTCAGCCAATTTATGATTCATGGACCCTGTGGAGAATTAAATTTAAAATCTCCTTGCATGCGAAATGGAAAGTGTTCTAAATTTTTTCCAAAACCATACAATCTAAATACTATATTTGAATCAAATATGCCCACAGTATATAGACGTCGTGATGATCTAACAAAGTTTATATTAAAAAATGATATTCACATTGGAAATAATTTTGTTGTACCTTACAATATAAATTTGTTATTAAGATATAACGCTCATATAAATGTTGAGTTATGTTCTCAATCTATGCTAATAAAATATTTATTTAAATATATTAACAAAGGTCCAGATCGAGCTCGAATTTTATTTCAAGAAAATTTAAAAGATGAAATCTCTGCTTATCTTAATTGTCGATATTTAACTCCTCATGAATCTGTATGGAGATTATTTGAATATTCAATTCATTCTAGGCATCCTGCCGTTCAACATTTACAAATTCATTTACCTTCAGAACAAAATATAATTTTTAATGAATGTCAATCAATTGAATCAATAATAAAGCAAAAAAGTACAGAATATACTATGCTTACCGGATGGTTTAAAGCAAATACTATATATCCAGGAGCAACTGAATTAACATATACAAATTTTCCAAGTAAATTCGTATGGGATGACCAGAAAAAATGTTGGACACCAAGAAAAAAATGTGAAACCATTGGCCGAATAACATATATATATATCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N

Protein Analysis

791

Amino Acids

92.22

Weight (kDa)

8.68

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helitron_like_N PF14214 336 - 518 3.6e-57 Helitron helicase-like domain at N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 366, 1575
AasI GACNNNNNNGTC 1 cut(s) 87
AatII GACGTC 1 cut(s) 1807
AccB7I CCANNNNNTGG 1 cut(s) 323
AccI GTMKAC 1 cut(s) 1303
AccII CGCG 1 cut(s) 79
AciI CCGC 1 cut(s) 1590
AclI AACGTT 1 cut(s) 73
AclWI GGATC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 2347
AcuI CTGAAG 2 cut(s) 1167, 2121
AcyI GRCGYC 1 cut(s) 1804
AfaI GTAC 5 cut(s) 158, 462, 1180, 1869, 2200
AfiI CCNNNNNNNGG 2 cut(s) 323, 494
AflIII ACRYGT 1 cut(s) 885
AjnI CCWGG 2 cut(s) 961, 2248
AjuI GAANNNNNNNTTGG 2 cut(s) 1659, 1691
AluBI AGCT 3 cut(s) 200, 1187, 1985
AluI AGCT 3 cut(s) 200, 1187, 1985
Alw21I GWGCWC 1 cut(s) 1987
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 566
AlwNI CAGNNNCTG 1 cut(s) 1592
Ama87I CYCGRG 2 cut(s) 142, 299
AoxI GGCC 1 cut(s) 2347
ArsI GACNNNNNNTTYG 2 cut(s) 872, 904
AseI ATTAAT 4 cut(s) 24, 561, 1200, 1272
Asp700I GAANNNNTTC 1 cut(s) 1732
AspS9I GGNCC 3 cut(s) 431, 1682, 1973
AsuHPI GGTGA 2 cut(s) 806, 932
AvaI CYCGRG 2 cut(s) 142, 299
AvaII GGWCC 3 cut(s) 431, 1682, 1973
BanII GRGCYC 1 cut(s) 1987
BbsI GAAGAC 2 cut(s) 144, 1119
Bbv12I GWGCWC 1 cut(s) 1987
BccI CCATC 3 cut(s) 773, 920, 2217
BceAI ACGGC 1 cut(s) 2093
BciT130I CCWGG 2 cut(s) 963, 2250
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 2 cut(s) 1260, 2097
BfmI CTRYAG 2 cut(s) 1188, 2372
BisI GCNGC 1 cut(s) 1590
BlsI GCNGC 1 cut(s) 1591
Bme1390I CCNGG 2 cut(s) 963, 2250
Bme18I GGWCC 3 cut(s) 431, 1682, 1973
BmeT110I CYCGRG 2 cut(s) 142, 299
BmgT120I GGNCC 3 cut(s) 431, 1682, 1973
BmiI GGNNCC 1 cut(s) 1684
BmrFI CCNGG 2 cut(s) 963, 2250
BmsI GCATC 6 cut(s) 166, 233, 1217, 1276, 1486, 2110
BpiI GAAGAC 2 cut(s) 144, 1119
BpmI CTGGAG 1 cut(s) 1494
Bsa29I ATCGAT 1 cut(s) 777
BsaBI GATNNNNATC 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 1804
BsaI GGTCTC 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 2219
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 494
Bse1I ACTGG 2 cut(s) 765, 1255
Bse3DI GCAATG 2 cut(s) 1008, 1351
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 2 cut(s) 963, 2250
BseCI ATCGAT 1 cut(s) 777
BseGI GGATG 5 cut(s) 874, 1208, 2101, 2228, 2305
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 2 cut(s) 323, 494
BseMI GCAATG 2 cut(s) 1008, 1351
BseNI ACTGG 2 cut(s) 765, 1255
BseRI GAGGAG 1 cut(s) 2043
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 2349
BshVI ATCGAT 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 1987
BsiHKCI CYCGRG 2 cut(s) 142, 299
BsiSI CCGG 1 cut(s) 2220
BslI CCNNNNNNNGG 2 cut(s) 323, 494
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 2349
Bso31I GGTCTC 1 cut(s) 47
BsoBI CYCGRG 2 cut(s) 142, 299
Bsp1286I GDGCHC 1 cut(s) 1987
Bsp143I GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
Bsp68I TCGCGA 1 cut(s) 79
BspACI CCGC 1 cut(s) 1590
BspANI GGCC 1 cut(s) 2349
BspDI ATCGAT 1 cut(s) 777
BspFNI CGCG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 2056
BspLI GGNNCC 1 cut(s) 1684
BspPI GGATC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 1008, 1351
BsrI ACTGG 2 cut(s) 765, 1255
BssMI GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
BssNI GRCGYC 1 cut(s) 1804
Bst2UI CCWGG 2 cut(s) 963, 2250
Bst4CI ACNGT 5 cut(s) 7, 127, 1105, 1118, 1795
BstACI GRCGYC 1 cut(s) 1804
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstC8I GCNNGC 3 cut(s) 181, 1002, 1718
BstF5I GGATG 5 cut(s) 874, 1208, 2101, 2228, 2305
BstFNI CGCG 1 cut(s) 79
BstKTI GATC 7 cut(s) 70, 212, 278, 341, 574, 1816, 1981
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstNI CCWGG 2 cut(s) 963, 2250
BstNSI RCATGY 3 cut(s) 183, 889, 1720
BstSCI CCNGG 2 cut(s) 961, 2248
BstSFI CTRYAG 2 cut(s) 1188, 2372
BstUI CGCG 1 cut(s) 79
BstV2I GAAGAC 2 cut(s) 144, 1119
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 1 cut(s) 2349
BsuTUI ATCGAT 1 cut(s) 777
BtsCI GGATG 5 cut(s) 874, 1208, 2101, 2228, 2305
BtsIMutI CAGTG 2 cut(s) 12, 772
BtuMI TCGCGA 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 181, 1002, 1718
CaiI CAGNNNCTG 1 cut(s) 1592
CciI TCATGA 1 cut(s) 2056
Cfr13I GGNCC 3 cut(s) 431, 1682, 1973
ClaI ATCGAT 1 cut(s) 777
CseI GACGC 1 cut(s) 84
Csp6I GTAC 5 cut(s) 157, 461, 1179, 1868, 2199
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 7 cut(s) 162, 180, 886, 1541, 1679, 1717, 2057
CviJI RGCY 7 cut(s) 190, 200, 1187, 1589, 1665, 1985, 2349
CviKI_1 RGCY 7 cut(s) 190, 200, 1187, 1589, 1665, 1985, 2349
CviQI GTAC 5 cut(s) 157, 461, 1179, 1868, 2199
DpnI GATC 7 cut(s) 69, 211, 277, 340, 573, 1815, 1980
DpnII GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
DraI TTTAAA 5 cut(s) 1435, 1704, 1957, 2010, 2230
DrdI GACNNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 2347
Ecl136II GAGCTC 1 cut(s) 1985
Eco24I GRGCYC 1 cut(s) 1987
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 3 cut(s) 431, 1682, 1973
Eco53kI GAGCTC 1 cut(s) 1985
Eco57I CTGAAG 2 cut(s) 1167, 2121
Eco88I CYCGRG 2 cut(s) 142, 299
EcoICRI GAGCTC 1 cut(s) 1985
EcoO109I RGGNCCY 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 961, 2248
EcoT22I ATGCAT 3 cut(s) 181, 226, 1501
EcoT38I GRGCYC 1 cut(s) 1987
FaeI CATG 7 cut(s) 165, 183, 889, 1544, 1682, 1720, 2060
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 7 cut(s) 161, 179, 885, 1540, 1678, 1716, 2056
FauNDI CATATG 3 cut(s) 916, 1501, 1548
FblI GTMKAC 1 cut(s) 1303
Fnu4HI GCNGC 1 cut(s) 1590
FokI GGATG 5 cut(s) 861, 1195, 2088, 2235, 2312
FriOI GRGCYC 1 cut(s) 1987
Fsp4HI GCNGC 1 cut(s) 1590
FspBI CTAG 2 cut(s) 1260, 2097
GluI GCNGC 1 cut(s) 1590
GsuI CTGGAG 1 cut(s) 1494
HaeIII GGCC 1 cut(s) 2349
HapII CCGG 1 cut(s) 2220
HgaI GACGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 1804
Hin1II CATG 7 cut(s) 165, 183, 889, 1544, 1682, 1720, 2060
HincII GTYRAC 2 cut(s) 123, 731
HindII GTYRAC 2 cut(s) 123, 731
HpaI GTTAAC 1 cut(s) 123
HpaII CCGG 1 cut(s) 2220
HphI GGTGA 2 cut(s) 806, 932
Hpy166II GTNNAC 7 cut(s) 123, 157, 731, 854, 1064, 1304, 1639
Hpy188I TCNGA 7 cut(s) 48, 65, 331, 347, 576, 666, 2140
Hpy8I GTNNAC 7 cut(s) 123, 157, 731, 854, 1064, 1304, 1639
Hpy99I CGWCG 1 cut(s) 1809
HpyAV CCTTC 2 cut(s) 608, 2145
HpyCH4III ACNGT 5 cut(s) 7, 127, 1105, 1118, 1795
HpyCH4IV ACGT 4 cut(s) 73, 859, 1066, 1804
HpyCH4V TGCA 8 cut(s) 179, 224, 566, 1100, 1344, 1499, 1507, 1716
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpySE526I ACGT 4 cut(s) 73, 859, 1066, 1804
Hsp92I GRCGYC 1 cut(s) 1804
Hsp92II CATG 7 cut(s) 165, 183, 889, 1544, 1682, 1720, 2060
KspAI GTTAAC 1 cut(s) 123
Kzo9I GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
LmnI GCTCC 2 cut(s) 395, 2252
LweI GCATC 6 cut(s) 166, 233, 1217, 1276, 1486, 2110
MaeI CTAG 2 cut(s) 1260, 2097
MaeII ACGT 4 cut(s) 73, 859, 1066, 1804
MaeIII GTNAC 1 cut(s) 164
MalI GATC 7 cut(s) 69, 211, 277, 340, 573, 1815, 1980
MboI GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
MboII GAAGA 8 cut(s) 149, 782, 935, 1121, 1124, 1146, 1415, 1460
MfeI CAATTG 2 cut(s) 567, 2172
MhlI GDGCHC 1 cut(s) 1987
MlyI GAGTC 2 cut(s) 134, 612
MmeI TCCRAC 1 cut(s) 2297
MnlI CCTC 5 cut(s) 308, 499, 1523, 1548, 2064
Mph1103I ATGCAT 3 cut(s) 181, 226, 1501
MroXI GAANNNNTTC 1 cut(s) 1732
MslI CAYNNNNRTG 5 cut(s) 174, 389, 585, 626, 1911
MspA1I CMGCKG 1 cut(s) 1592
MspI CCGG 1 cut(s) 2220
MspR9I CCNGG 2 cut(s) 963, 2250
MunI CAATTG 2 cut(s) 567, 2172
MvaI CCWGG 2 cut(s) 963, 2250
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 1010
NdeI CATATG 3 cut(s) 916, 1501, 1548
NdeII GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
NlaIII CATG 7 cut(s) 165, 183, 889, 1544, 1682, 1720, 2060
NlaIV GGNNCC 1 cut(s) 1684
NmeAIII GCCGAG 1 cut(s) 41
NruI TCGCGA 1 cut(s) 79
NsiI ATGCAT 3 cut(s) 181, 226, 1501
NspI RCATGY 3 cut(s) 183, 889, 1720
PaeI GCATGC 2 cut(s) 183, 1720
PaeR7I CTCGAG 1 cut(s) 299
PagI TCATGA 1 cut(s) 2056
PciI ACATGT 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 1732
PflMI CCANNNNNTGG 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 2248
PkrI GCNGC 1 cut(s) 1591
PleI GAGTC 2 cut(s) 134, 612
PpsI GAGTC 2 cut(s) 134, 612
PpuMI RGGWCCY 1 cut(s) 431
PscI ACATGT 1 cut(s) 885
PshBI ATTAAT 4 cut(s) 24, 561, 1200, 1272
PsiI TTATAA 2 cut(s) 366, 1575
Psp124BI GAGCTC 1 cut(s) 1987
Psp1406I AACGTT 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 961, 2248
PspGI CCWGG 2 cut(s) 961, 2248
PspN4I GGNNCC 1 cut(s) 1684
PspPI GGNCC 3 cut(s) 431, 1682, 1973
PspPPI RGGWCCY 1 cut(s) 431
PspXI VCTCGAGB 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 1592
RruI TCGCGA 1 cut(s) 79
RsaI GTAC 5 cut(s) 158, 462, 1180, 1869, 2200
RsaNI GTAC 5 cut(s) 157, 461, 1179, 1868, 2199
RseI CAYNNNNRTG 5 cut(s) 174, 389, 585, 626, 1911
SacI GAGCTC 1 cut(s) 1987
SatI GCNGC 1 cut(s) 1590
Sau3AI GATC 7 cut(s) 67, 209, 275, 338, 571, 1813, 1978
Sau96I GGNCC 3 cut(s) 431, 1682, 1973
SchI GAGTC 2 cut(s) 134, 612
ScrFI CCNGG 2 cut(s) 963, 2250
SduI GDGCHC 1 cut(s) 1987
SfaNI GCATC 6 cut(s) 166, 233, 1217, 1276, 1486, 2110
SfcI CTRYAG 2 cut(s) 1188, 2372
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 3 cut(s) 431, 1682, 1973
SlaI CTCGAG 1 cut(s) 299
SmiI ATTTAAAT 1 cut(s) 1957
SmiMI CAYNNNNRTG 5 cut(s) 174, 389, 585, 626, 1911
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 2 cut(s) 183, 1720
SsiI CCGC 1 cut(s) 1590
SspI AATATT 3 cut(s) 403, 1949, 2084
SspMI CTAG 2 cut(s) 1260, 2097
SstI GAGCTC 1 cut(s) 1987
StyD4I CCNGG 2 cut(s) 961, 2248
SwaI ATTTAAAT 1 cut(s) 1957
TaaI ACNGT 5 cut(s) 7, 127, 1105, 1118, 1795
TaiI ACGT 4 cut(s) 76, 862, 1069, 1807
TaqI TCGA 5 cut(s) 300, 777, 1981, 1987, 2041
TaqII GACCGA 2 cut(s) 71, 1044
TatI WGTACW 4 cut(s) 156, 460, 1178, 2198
TauI GCSGC 1 cut(s) 1592
TscAI CASTG 2 cut(s) 12, 772
TspRI CASTG 2 cut(s) 12, 772
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 3 cut(s) 431, 1682, 1973
VspI ATTAAT 4 cut(s) 24, 561, 1200, 1272
XceI RCATGY 3 cut(s) 183, 889, 1720
XhoI CTCGAG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 1303
XmnI GAANNNNTTC 1 cut(s) 1732
XspI CTAG 2 cut(s) 1260, 2097
ZraI GACGTC 1 cut(s) 1805
Zsp2I ATGCAT 3 cut(s) 181, 226, 1501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.