Rmu_sc0000733.1_g000005

Helicase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000733.1
OG0000080
Physical Location & Seq
Reverse (-)
22777 .. 24885
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000733.1_g000005.1.cds

Sequence Viewer

Length: 2109 bp
atgcaacagataacattcgatgtaaatgaaacagtagagaatattctggcagatgagcacgcacaaatgtcaatgcttactaagtttttcaccataaatcaaatggatgaggatgccagagcatatttgtatcgagaaattcctgaacattacaggtgggatagtagcaacaaaatttgggtgaaaagaaggagaaactacaaggttattgggcgaatatacagcgtctcaccatctgaaggtgagaaattttacctgcgtgtccttcttaatcatgtaagaggtccaagatcatttcgtgatttgcttactgttaatggtgttctacaaccaacattcaagcaagcagcagagaaacaacgtttgctagaaaatgacaatagtatccgacagtgtttgttcgaggcctctgcaattaggatgccatcaactttgaggagattattcgtcacaattttggtgtacaatgatccaatcggtgttcgaacattgtgggatgaattttttccttttatggcggaagattatccttcatatggtgatattgcaaaccgaaacaggctcttacaagatttaaatggagtacttgaacaatttaacaggaacataagagattttgacctgcctgaaatgacaagggagccagaagaaaattcgggaatgccgaggtggattgaagacgaactttccgtacatatttctcaagaagacattgatgcaattgatcgccttaatgaagaccaaaggatcgcatttaacacgatcgtggatgcagttcagagaaaaagaagtgcattattttttgttgatggtcctggtggaactgggaagacatatttataccgtgcattgctagcaaacttacggagaatgaatcatatagtcttagccacagcatcatctggaatagctacaaatatactgcctagcgggaggacagctcactctagatttaagattctactcaatgtagatgcgtcatctatgtgttccataagtaaacagtctgctctggcacaactgatacaagactcgactgcaattatttgggatgaggcgcctatgacacatcgacatgtctttgaagcacttgatcaaacttttcgagacataatggatgtcgacttaccatttggtggaaagataatgatttttgggggagattttcgtcaagtcctccctgttattcctaaaggaacgaaatctgaactcattcaagcctccattgtgaaatcaacattttgggcacagataaagatattgacactgagacagaatatgagatccataaatgaccaccaatttgcagagtttcttcttcgtgttggcgatgggagtgaacaagtcatcaatgacgaaatgataagattaccggaatgcatggtggttccatgggaaagcgaccaatctatcaatctaattattgatgaagttttccccaatttgggtgatcatgtaaatgatgcaagatacatggtggacagagcattgattactcctataaacgacaatttggacatgttgaatgaaaagataatcaatgactttgttgaagatgacatcagaaatttgtaccaaccagagtttctgaacttaataaccgcaggtgggctgccaccccacaagttaactttgaaagtaggtgctccaatcatgcttttaaggaatattgaccctaaattgggattgtgtaacggtactagattgttgtgccatggttcgtaccaaaatctgattgatgctgagatactaacaggacaatttgctaggactagagttttcctaccgagaattcctttgaaaagtgcagaaaatgctgggctaccatttcaactaacaagaaagcaatttccagtcaaactgagcttctgtttgaccataaacaaatctcaaggccagactatcccacatgtaggtgtttacctcccagatcatgtttttagtcatggacaattatatgtggcattgtcgagaggagtatcggagtcaaccacaaaagttttggttaaaaaaggatccatagttggtgaagatggtgtatttacgaagaatgtcgtatttaaagaagttttgcttcattcaaacacaaatgaaggatcatcttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

702

Amino Acids

79.95

Weight (kDa)

6.11

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1595
Acc36I ACCTGC 3 cut(s) 264, 630, 1595
AccB1I GGYRCC 1 cut(s) 1057
AccB7I CCANNNNNTGG 1 cut(s) 1136
AccI GTMKAC 1 cut(s) 1122
AciI CCGC 3 cut(s) 518, 930, 1602
AclI AACGTT 1 cut(s) 361
AclWI GGATC 6 cut(s) 464, 755, 1278, 2010, 2023, 2104
AcsI RAATTY 7 cut(s) 138, 174, 248, 500, 652, 1567, 1791
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 1058
AfaI GTAC 6 cut(s) 464, 585, 693, 1574, 1699, 1724
AfiI CCNNNNNNNGG 9 cut(s) 239, 536, 1136, 1444, 1445, 1608, 1681, 1682, 1913
AflIII ACRYGT 3 cut(s) 1075, 1518, 1909
AjnI CCWGG 1 cut(s) 814
AjuI GAANNNNNNNTTGG 2 cut(s) 1569, 1601
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 3 cut(s) 911, 941, 1866
AluI AGCT 3 cut(s) 911, 941, 1866
Alw21I GWGCWC 2 cut(s) 60, 1648
Alw26I GTCTC 3 cut(s) 232, 1101, 1264
AlwI GGATC 6 cut(s) 464, 755, 1278, 2010, 2023, 2104
AoxI GGCC 2 cut(s) 405, 1894
ApeKI GCWGC 2 cut(s) 347, 1612
ApoI RAATTY 7 cut(s) 138, 174, 248, 500, 652, 1567, 1791
ArsI GACNNNNNNTTYG 4 cut(s) 1115, 1147, 1286, 1318
Asp700I GAANNNNTTC 2 cut(s) 504, 1212
AspLEI GCGC 1 cut(s) 1060
AspS9I GGNCC 2 cut(s) 284, 812
AsuHPI GGTGA 7 cut(s) 82, 193, 222, 254, 551, 1460, 2039
AsuII TTCGAA 1 cut(s) 484
AsuNHI GCTAGC 1 cut(s) 853
AvaII GGWCC 2 cut(s) 284, 812
BaeGI GKGCMC 1 cut(s) 1249
BaeI ACNNNNGTAYC 2 cut(s) 367, 400
BamHI GGATCC 1 cut(s) 2015
BanI GGYRCC 1 cut(s) 1057
BbsI GAAGAC 4 cut(s) 684, 714, 744, 836
Bbv12I GWGCWC 2 cut(s) 60, 1648
BbvI GCAGC 2 cut(s) 359, 1599
BccI CCATC 5 cut(s) 241, 433, 803, 1325, 2027
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 1 cut(s) 816
BciVI GTATCC 1 cut(s) 395
BclI TGATCA 2 cut(s) 1093, 1450
BcoDI GTCTC 3 cut(s) 232, 1101, 1264
BfaI CTAG 7 cut(s) 368, 854, 927, 948, 1701, 1767, 1773
BfoI RGCGCY 1 cut(s) 1061
BfuAI ACCTGC 3 cut(s) 264, 630, 1595
BfuI GTATCC 1 cut(s) 395
BisI GCNGC 2 cut(s) 348, 1613
BlsI GCNGC 2 cut(s) 349, 1614
BmcAI AGTACT 1 cut(s) 585
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 2 cut(s) 284, 812
BmgT120I GGNCC 2 cut(s) 284, 812
BmiI GGNNCC 4 cut(s) 642, 1059, 1389, 2017
BmrFI CCNGG 1 cut(s) 816
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 8 cut(s) 103, 411, 706, 760, 905, 964, 1453, 1729
BmtI GCTAGC 1 cut(s) 857
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 4 cut(s) 684, 714, 744, 836
BplI GAGNNNNNCTC 2 cut(s) 925, 957
Bpu14I TTCGAA 1 cut(s) 484
BpuEI CTTGAG 2 cut(s) 687, 1875
BsaHI GRCGYC 1 cut(s) 1058
BsaJI CCNNGG 3 cut(s) 665, 1391, 1714
BsaWI WCCGGW 1 cut(s) 1372
Bsc4I CCNNNNNNNGG 9 cut(s) 239, 536, 1136, 1444, 1445, 1608, 1681, 1682, 1913
Bse1I ACTGG 2 cut(s) 829, 1853
Bse3DI GCAATG 1 cut(s) 848
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 3 cut(s) 665, 1391, 1714
BseGI GGATG 7 cut(s) 112, 118, 426, 502, 775, 1057, 1123
BseLI CCNNNNNNNGG 9 cut(s) 239, 536, 1136, 1444, 1445, 1608, 1681, 1682, 1913
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 3 cut(s) 1259, 1734, 1853
BseNI ACTGG 2 cut(s) 829, 1853
BseRI GAGGAG 2 cut(s) 451, 1989
BseSI GKGCMC 1 cut(s) 1249
BseXI GCAGC 2 cut(s) 359, 1599
BseYI CCCAGC 1 cut(s) 1817
BsgI GTGCAG 1 cut(s) 1827
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 2 cut(s) 407, 1896
BshNI GGYRCC 1 cut(s) 1057
BsiEI CGRYCG 1 cut(s) 765
BsiHKAI GWGCWC 2 cut(s) 60, 1648
BsiSI CCGG 1 cut(s) 1373
BslI CCNNNNNNNGG 9 cut(s) 239, 536, 1136, 1444, 1445, 1608, 1681, 1682, 1913
BsmAI GTCTC 3 cut(s) 232, 1101, 1264
BsmBI CGTCTC 1 cut(s) 232
BsmI GAATGC 2 cut(s) 666, 1382
BsnI GGCC 2 cut(s) 407, 1896
Bsp119I TTCGAA 1 cut(s) 484
Bsp1286I GDGCHC 3 cut(s) 60, 1249, 1648
Bsp1407I TGTACA 1 cut(s) 462
Bsp19I CCATGG 2 cut(s) 1391, 1714
BspACI CCGC 3 cut(s) 518, 930, 1602
BspANI GGCC 2 cut(s) 407, 1896
BspCNI CTCAG 3 cut(s) 1260, 1735, 1854
BspLI GGNNCC 4 cut(s) 642, 1059, 1389, 2017
BspMI ACCTGC 3 cut(s) 264, 630, 1595
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 6 cut(s) 464, 755, 1278, 2010, 2023, 2104
BspT104I TTCGAA 1 cut(s) 484
BspT107I GGYRCC 1 cut(s) 1057
BsrDI GCAATG 1 cut(s) 848
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 2 cut(s) 829, 1853
BssECI CCNNGG 3 cut(s) 665, 1391, 1714
BssNI GRCGYC 1 cut(s) 1058
BssT1I CCWWGG 2 cut(s) 1391, 1714
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 6 cut(s) 34, 313, 393, 845, 1005, 1697
BstACI GRCGYC 1 cut(s) 1058
BstAPI GCANNNNNTGC 1 cut(s) 1814
BstAUI TGTACA 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 60, 345, 855
BstDEI CTNAG 5 cut(s) 81, 886, 1268, 1743, 1862
BstDSI CCRYGG 2 cut(s) 1391, 1714
BstF5I GGATG 7 cut(s) 112, 118, 426, 502, 775, 1057, 1123
BstH2I RGCGCY 1 cut(s) 1061
BstHHI GCGC 1 cut(s) 1060
BstMAI GTCTC 3 cut(s) 232, 1101, 1264
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 2 cut(s) 854, 1814
BstNI CCWGG 1 cut(s) 816
BstNSI RCATGY 3 cut(s) 1079, 1522, 1913
BstSCI CCNGG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 1249
BstV1I GCAGC 2 cut(s) 359, 1599
BstV2I GAAGAC 4 cut(s) 684, 714, 744, 836
BstX2I RGATCY 2 cut(s) 1283, 2015
BstYI RGATCY 2 cut(s) 1283, 2015
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 2 cut(s) 407, 1896
BtgI CCRYGG 2 cut(s) 1391, 1714
BtgZI GCGATG 1 cut(s) 1344
BtsCI GGATG 7 cut(s) 112, 118, 426, 502, 775, 1057, 1123
BtsIMutI CAGTG 2 cut(s) 398, 1265
BveI ACCTGC 3 cut(s) 264, 630, 1595
Cac8I GCNNGC 3 cut(s) 60, 345, 855
CfoI GCGC 1 cut(s) 1060
Cfr13I GGNCC 2 cut(s) 284, 812
CseI GACGC 2 cut(s) 214, 966
Csp6I GTAC 6 cut(s) 463, 584, 692, 1573, 1698, 1723
CviQI GTAC 6 cut(s) 463, 584, 692, 1573, 1698, 1723
DdeI CTNAG 5 cut(s) 81, 886, 1268, 1743, 1862
DinI GGCGCC 1 cut(s) 1059
DraI TTTAAA 2 cut(s) 576, 2062
EciI GGCGGA 1 cut(s) 533
Eco130I CCWWGG 2 cut(s) 1391, 1714
Eco147I AGGCCT 1 cut(s) 407
Eco47I GGWCC 2 cut(s) 284, 812
Eco57I CTGAAG 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 1791
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 1391, 1714
EcoT22I ATGCAT 1 cut(s) 1382
EgeI GGCGCC 1 cut(s) 1059
EheI GGCGCC 1 cut(s) 1059
ErhI CCWWGG 2 cut(s) 1391, 1714
Esp3I CGTCTC 1 cut(s) 232
FalI AAGNNNNNCTT 4 cut(s) 669, 701, 2058, 2090
FauI CCCGC 1 cut(s) 923
FauNDI CATATG 1 cut(s) 535
FbaI TGATCA 2 cut(s) 1093, 1450
FblI GTMKAC 1 cut(s) 1122
Fnu4HI GCNGC 2 cut(s) 348, 1613
FokI GGATG 7 cut(s) 119, 125, 433, 509, 782, 1064, 1130
Fsp4HI GCNGC 2 cut(s) 348, 1613
FspBI CTAG 7 cut(s) 368, 854, 927, 948, 1701, 1767, 1773
GlaI GCGC 1 cut(s) 1059
GluI GCNGC 2 cut(s) 348, 1613
GsaI CCCAGC 1 cut(s) 1821
HaeII RGCGCY 1 cut(s) 1061
HaeIII GGCC 2 cut(s) 407, 1896
HapII CCGG 1 cut(s) 1373
HgaI GACGC 2 cut(s) 214, 966
HhaI GCGC 1 cut(s) 1060
Hin1I GRCGYC 1 cut(s) 1058
Hin6I GCGC 1 cut(s) 1058
HinP1I GCGC 1 cut(s) 1058
HincII GTYRAC 3 cut(s) 1123, 1629, 1989
HindII GTYRAC 3 cut(s) 1123, 1629, 1989
HinfI GANTC 4 cut(s) 874, 958, 1031, 1985
HpaI GTTAAC 1 cut(s) 1629
HpaII CCGG 1 cut(s) 1373
HphI GGTGA 7 cut(s) 82, 193, 222, 254, 551, 1460, 2039
Hpy166II GTNNAC 8 cut(s) 463, 1001, 1123, 1340, 1480, 1629, 1921, 1989
Hpy188I TCNGA 8 cut(s) 238, 389, 780, 1207, 1565, 1590, 1734, 1984
Hpy188III TCNNGA 9 cut(s) 134, 143, 299, 657, 704, 903, 948, 1106, 1971
Hpy8I GTNNAC 8 cut(s) 463, 1001, 1123, 1340, 1480, 1629, 1921, 1989
HpyAV CCTTC 5 cut(s) 183, 233, 275, 540, 2087
HpyCH4III ACNGT 6 cut(s) 34, 313, 393, 845, 1005, 1697
HpyCH4IV ACGT 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 854, 1814
HpyF3I CTNAG 5 cut(s) 81, 886, 1268, 1743, 1862
HpySE526I ACGT 1 cut(s) 361
Hsp92I GRCGYC 1 cut(s) 1058
HspAI GCGC 1 cut(s) 1058
KasI GGCGCC 1 cut(s) 1057
Ksp22I TGATCA 2 cut(s) 1093, 1450
KspAI GTTAAC 1 cut(s) 1629
LmnI GCTCC 2 cut(s) 640, 1651
Lsp1109I GCAGC 2 cut(s) 359, 1599
LweI GCATC 8 cut(s) 103, 411, 706, 760, 905, 964, 1453, 1729
MaeI CTAG 7 cut(s) 368, 854, 927, 948, 1701, 1767, 1773
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 2 cut(s) 448, 1691
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 2 cut(s) 1283, 2015
MhlI GDGCHC 3 cut(s) 60, 1249, 1648
Mly113I GGCGCC 1 cut(s) 1058
MlyI GAGTC 2 cut(s) 1025, 1994
MmeI TCCRAC 1 cut(s) 412
Mph1103I ATGCAT 1 cut(s) 1382
MroXI GAANNNNTTC 2 cut(s) 504, 1212
MslI CAYNNNNRTG 5 cut(s) 764, 985, 1074, 1458, 1914
MspI CCGG 1 cut(s) 1373
MspR9I CCNGG 1 cut(s) 816
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 2 cut(s) 666, 1382
MvaI CCWGG 1 cut(s) 816
MwoI GCNNNNNNNGC 2 cut(s) 854, 1814
NarI GGCGCC 1 cut(s) 1058
NcoI CCATGG 2 cut(s) 1391, 1714
NdeI CATATG 1 cut(s) 535
NheI GCTAGC 1 cut(s) 853
NlaIV GGNNCC 4 cut(s) 642, 1059, 1389, 2017
NmeAIII GCCGAG 1 cut(s) 690
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 1382
NspI RCATGY 3 cut(s) 1079, 1522, 1913
NspV TTCGAA 1 cut(s) 484
OliI CACNNNNGTG 1 cut(s) 764
PaqCI CACCTGC 1 cut(s) 1595
PceI AGGCCT 1 cut(s) 407
PciI ACATGT 3 cut(s) 1075, 1518, 1909
PcsI WCGNNNNNNNCGW 2 cut(s) 662, 687
PctI GAATGC 2 cut(s) 666, 1382
PdmI GAANNNNTTC 2 cut(s) 504, 1212
PfeI GAWTC 2 cut(s) 874, 958
PflMI CCANNNNNTGG 1 cut(s) 1136
PkrI GCNGC 2 cut(s) 349, 1614
Ple19I CGATCG 1 cut(s) 765
PleI GAGTC 2 cut(s) 1025, 1993
PluTI GGCGCC 1 cut(s) 1061
PpsI GAGTC 2 cut(s) 1025, 1993
PscI ACATGT 3 cut(s) 1075, 1518, 1909
Psp1406I AACGTT 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 814
PspFI CCCAGC 1 cut(s) 1817
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 4 cut(s) 642, 1059, 1389, 2017
PspPI GGNCC 2 cut(s) 284, 812
PsrI GAACNNNNNNTAC 2 cut(s) 675, 707
PsuI RGATCY 2 cut(s) 1283, 2015
PvuI CGATCG 1 cut(s) 765
RsaI GTAC 6 cut(s) 464, 585, 693, 1574, 1699, 1724
RsaNI GTAC 6 cut(s) 463, 584, 692, 1573, 1698, 1723
RseI CAYNNNNRTG 5 cut(s) 764, 985, 1074, 1458, 1914
SalI GTCGAC 1 cut(s) 1121
SatI GCNGC 2 cut(s) 348, 1613
Sau96I GGNCC 2 cut(s) 284, 812
ScaI AGTACT 1 cut(s) 585
SchI GAGTC 2 cut(s) 1025, 1994
ScrFI CCNGG 1 cut(s) 816
SduI GDGCHC 3 cut(s) 60, 1249, 1648
SfaNI GCATC 8 cut(s) 103, 411, 706, 760, 905, 964, 1453, 1729
SfoI GGCGCC 1 cut(s) 1059
SfuI TTCGAA 1 cut(s) 484
SinI GGWCC 2 cut(s) 284, 812
SmiI ATTTAAAT 1 cut(s) 576
SmiMI CAYNNNNRTG 5 cut(s) 764, 985, 1074, 1458, 1914
SmlI CTYRAG 2 cut(s) 702, 1890
SmoI CTYRAG 2 cut(s) 702, 1890
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 3 cut(s) 518, 930, 1602
SspDI GGCGCC 1 cut(s) 1057
SspI AATATT 2 cut(s) 43, 1669
SspMI CTAG 7 cut(s) 368, 854, 927, 948, 1701, 1767, 1773
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 2 cut(s) 1391, 1714
SwaI ATTTAAAT 1 cut(s) 576
TaaI ACNGT 6 cut(s) 34, 313, 393, 845, 1005, 1697
TaiI ACGT 1 cut(s) 364
TaqI TCGA 9 cut(s) 18, 133, 402, 484, 1034, 1072, 1105, 1122, 1970
TatI WGTACW 2 cut(s) 462, 583
TfiI GAWTC 2 cut(s) 874, 958
TscAI CASTG 2 cut(s) 398, 1272
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 347, 1612
Tsp45I GTSAC 1 cut(s) 448
TspGWI ACGGA 2 cut(s) 679, 880
TspRI CASTG 2 cut(s) 398, 1272
Van91I CCANNNNNTGG 1 cut(s) 1136
VpaK11BI GGWCC 2 cut(s) 284, 812
XapI RAATTY 7 cut(s) 138, 174, 248, 500, 652, 1567, 1791
XbaI TCTAGA 1 cut(s) 947
XceI RCATGY 3 cut(s) 1079, 1522, 1913
XcmI CCANNNNNNNNNTGG 2 cut(s) 100, 1999
XmiI GTMKAC 1 cut(s) 1122
XmnI GAANNNNTTC 2 cut(s) 504, 1212
XspI CTAG 7 cut(s) 368, 854, 927, 948, 1701, 1767, 1773
ZrmI AGTACT 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.