Rmu_sc0005065.1_g000038

Helicase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005065.1
OG0000080
Physical Location & Seq
Reverse (-)
140623 .. 145083
4461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005065.1_g000038.1.cds

Sequence Viewer

Length: 3702 bp
atgaataatcacgatgaggaccacaataacaacgagcatatggtgaataatcatgaggatcagaacaacaacactgacctagagaataacccacaggatcagcgcagcagcagtgttgaaccaatgcggcgtacaaggagagcagtagtaaattacaactgcgctagagattttaatgagggatggggtgtcccattttgtcgattgcctgcactaagaacatgtccatactgcaatgcacggttatttcatcgagagaccttcaatttgtgttgttcgaaaggaaatattgttctgcctctaataccctctccgccagagatgatccagctcttttctgaccaaacaaatgtgggtagaaaattaagacaaaatatccgagcctacaataatgtgtttgcgttcacttcaatgggtgtgcatgttgatgaatccattaatcttcaaggtcgtggaatttatacttttcgtgcacaaggttctatatatcataagattggtgggcttttaccaagtgaaggggcgagaccacgatatctacaagcttacatatatgacaccgagaatgaacttgacaatcaattgtctgaaagtgtagttttagacagggcattggttgaaaagatacaacagatattgaatcactataatccatttgtccatcaatttcgaagcctcggacagcgccaagacttgcccaattgcaggctcatcataagagagcagccttctaatcaacgtcagtattgtgtaccatctgcatcacaagttgctgctattatagtaggagggggcgacatcaatccgaatggaagagatttaattgtccaaacaattagtggaagactctggaatgttaaagactcggtcggatattacgaccccatgcagtatcctttgttattaccttatggaacatatgggtgggatattaatagtcatgatgagaatggaagacctatgtcatgttgcgattattatgcatatatgttacagatgcgcccaggtgatgaaaatcctctacttcgaggcggacgactcttacaacagtatgttgtagataattacgtgaaaattgaatcccaaaaacttagatggcttcgcagtaaccaagatacaattaggaaagaattttatcaaggacttcaagactcttttattgcaggggaaaacaatgcagataacgtcggtcataggacaatcctgccatcatcatttgttggaagtccacgtgatatgtaccaacggtaccaagatgcgatggctttggttcaaaagtatggcagacctgatttgtttatcactatgacgtgtaacccgaattgggaagaaattaaaagtgagctactccctggacaaacatcacaagatcgtccagatttagaggttagggtatttcgttcaaaacttgagcaactaaaagaagacatcatcaccaaaggggtattgggaagagttattgctcatgcttttgtcgttgaatttcagaaacggggcctaccacatgtacacatgctggtcatgttggatgaaaatgataagcttaataaccttaaagattatgaccacattgttagagcagaaataccagataaagatgaagagcctcaactttatgatctggtgttgaaacatatgattcacggtccatgtggaaccttaaaccaacagtcttcatgtatgaagaatgggagatgcaataaaagttatccaaaatcatttgcaaatttcactgtgcaaggaaacgatgcatatcctatatatcgaagacgagcaagtcgcttaccagtccctctacgtagatctggagacacaatggtggataatagttgggttgttccttataacccgtggttgttgctacggtatgattgtcacatcaatgttgaaatatgtgggagcataaagagtgtcaaatacttatataagtatgtctacaaaggtcctgatagagttgcagttcaagtgcaatctgacccagagttcgatgaaataagacaatttgtcgatgcaaggtgggatagtaagcaaagagcttgggtgaaaagaaggaacaactacaaggtaattggaagaatatacagtgtttcaccctctgaaggtgataaattttacctacatgtcattctcaatcatataaaaggaccgagatcatttcgtgatttgcttactattaatggagttctgcaaactacttttaaggaagcagcagagaaacgaggtttgctggaagatgacaatagcattcgacaatgtctgttagaggcctctgcaattagaatgccatcagctctgagaagattattcgtcacaattttggtgtatagtcaaccaactggtgttcgaagattgtgggatgaattttatcctttcatgattgaagattattcttcttcaagtgatattgtcgatatttctgtcagaaacaggctacttcgagatctaaatagaatgctagaacaatttaataagggcactggagaatttgatctgcctgaaatgacaagtgagccagaagatagtctaggaataccgagatgtattgaagacgaaatttctataaatatcccgcaagaagatattgatgcaattgaccaccttaacaacgaccaaatgattgcattcaacaccataatggccgcagttgagggaagagaaagtgcattattttttatcgatggtcctggaggtactgggaagacgtacttatatcgtgcattgctagcaaagttgagaagaatgaatcatatagtcttagccacagcatcatctggaattgctgcaaatttattgtccggcgggaggacagctcactctagattcaagattccactctatgtagatgcatcatccatgtgttccgtaaaatttctacttcgtgttggcgatgggagtgaacaagtcattgacgatgaaatgatgagattaccagaacgcatggtggttccatgggaaagtgaccaatctatcaatcaaattattgatgaagttttccctaatttgggtgatcatgtaaatgatgcaagatacatggtggacagagcattgattactcctataaacgatgatgtggacgtgttgaatgaaaagataatcaatatgtttccaggtgaagaaattacattgtactcatttgactctgttgaagacgacatgagaaatttgtaccaaccagagtttctgaactcaataaccgcaggtgggctgccaccccacaagttaactttgaaagtaggtgctccaatcatgcttttaaggaatattgaccctaaattgggattgtgtaacggtactagattgttgtgtcgtggttcgtaccaaaatctgattgatgctgagatactaacaggacagtttgctgggactagagtttttctacctagaattcctttgaaaagtgcagaaaatgctgggctaccatttcaactaacaagaaagcaatttccaatcaaactgagcttttctttgaccataaacaaatctccaggtcagactatcccacatgtaggtgtttacctcccagatcatgtttttagtcatggacaattatatgttgcattgtcgagaggagtatcagagtcaaccacaaaagttttggttaaaaaaggatccatagttggtgaagatggcgtatttacgaagaatgtagtatttaaagaagttttgcttcattcaaacacaaatgatcgatcgtcttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

1233

Amino Acids

140.69

Weight (kDa)

6.45

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1845
AarI CACCTGC 1 cut(s) 3188
AasI GACNNNNNNGTC 1 cut(s) 1776
Acc36I ACCTGC 1 cut(s) 3188
Acc65I GGTACC 1 cut(s) 1248
AccB1I GGYRCC 1 cut(s) 1248
AccI GTMKAC 1 cut(s) 1935
AciI CCGC 7 cut(s) 127, 314, 1032, 2570, 2640, 2799, 3195
AclWI GGATC 5 cut(s) 66, 105, 319, 3603, 3616
AcoI YGGCCR 1 cut(s) 2637
AcuI CTGAAG 1 cut(s) 2118
AcvI CACGTG 1 cut(s) 1232
AflIII ACRYGT 6 cut(s) 221, 1310, 1504, 2119, 3075, 3502
AhdI GACNNNNNGTC 1 cut(s) 2003
AjiI CACGTC 2 cut(s) 1311, 3076
AjnI CCWGG 5 cut(s) 1003, 1351, 2683, 3106, 3484
AjuI GAANNNNNNNTTGG 2 cut(s) 3162, 3194
AleI CACNNNNGTG 1 cut(s) 1817
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 8 cut(s) 331, 545, 1345, 1543, 2036, 2291, 2810, 3459
AluI AGCT 8 cut(s) 331, 545, 1345, 1543, 2036, 2291, 2810, 3459
Alw21I GWGCWC 2 cut(s) 475, 3241
Alw26I GTCTC 3 cut(s) 251, 520, 1803
Alw44I GTGCAC 1 cut(s) 471
AlwI GGATC 5 cut(s) 66, 105, 319, 3603, 3616
AoxI GGCC 3 cut(s) 1495, 2265, 2637
ApaLI GTGCAC 1 cut(s) 471
ApeKI GCWGC 7 cut(s) 105, 108, 724, 773, 2207, 2780, 3205
ArsI GACNNNNNNTTYG 6 cut(s) 250, 282, 1967, 1999, 2777, 2809
AseI ATTAAT 3 cut(s) 438, 933, 2175
Asp718I GGTACC 1 cut(s) 1248
AspLEI GCGC 4 cut(s) 105, 164, 687, 1002
AspS9I GGNCC 6 cut(s) 19, 1495, 1646, 1943, 2144, 2681
AsuHPI GGTGA 9 cut(s) 55, 1019, 1426, 2053, 2082, 2114, 3017, 3122, 3632
AsuII TTCGAA 3 cut(s) 278, 670, 2344
AsuNHI GCTAGC 1 cut(s) 2722
AvaII GGWCC 5 cut(s) 19, 1646, 1943, 2144, 2681
BaeGI GKGCMC 2 cut(s) 475, 2477
BamHI GGATCC 1 cut(s) 3608
BanI GGYRCC 1 cut(s) 1248
BbrPI CACGTG 1 cut(s) 1232
BbsI GAAGAC 9 cut(s) 850, 961, 1431, 1665, 1774, 2553, 2705, 3153, 3687
Bbv12I GWGCWC 2 cut(s) 475, 3241
BbvI GCAGC 7 cut(s) 117, 120, 736, 760, 2219, 2767, 3192
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
BciVI GTATCC 1 cut(s) 903
BclI TGATCA 1 cut(s) 3007
BcoDI GTCTC 3 cut(s) 251, 520, 1803
BfaI CTAG 9 cut(s) 80, 165, 2456, 2525, 2723, 2817, 3294, 3366, 3381
BfoI RGCGCY 1 cut(s) 688
BfuAI ACCTGC 1 cut(s) 3188
BfuI GTATCC 1 cut(s) 903
BglII AGATCT 2 cut(s) 1802, 2440
BisI GCNGC 9 cut(s) 106, 109, 128, 725, 774, 2208, 2640, 2781, 3206
BlsI GCNGC 9 cut(s) 107, 110, 129, 726, 775, 2209, 2641, 2782, 3207
Bme1390I CCNGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
Bme18I GGWCC 5 cut(s) 19, 1646, 1943, 2144, 2681
BmeRI GACNNNNNGTC 1 cut(s) 2003
BmgBI CACGTC 2 cut(s) 1311, 3076
BmgT120I GGNCC 6 cut(s) 19, 1495, 1646, 1943, 2144, 2681
BmiI GGNNCC 5 cut(s) 1250, 1496, 1657, 2946, 3610
BmrFI CCNGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
BmrI ACTGGG 1 cut(s) 2703
BmtI GCTAGC 1 cut(s) 2726
BmuI ACTGGG 1 cut(s) 2703
BoxI GACNNNNGTC 1 cut(s) 961
BpiI GAAGAC 9 cut(s) 850, 961, 1431, 1665, 1774, 2553, 2705, 3153, 3687
BplI GAGNNNNNCTC 2 cut(s) 2794, 2826
BpmI CTGGAG 4 cut(s) 1827, 2499, 2706, 3468
Bpu14I TTCGAA 3 cut(s) 278, 670, 2344
BpuEI CTTGAG 1 cut(s) 1430
Bsa29I ATCGAT 2 cut(s) 2676, 3688
BsaAI YACGTR 3 cut(s) 1069, 1232, 1799
BsaBI GATNNNNATC 2 cut(s) 1014, 1752
BsaI GGTCTC 2 cut(s) 251, 520
BsaJI CCNNGG 5 cut(s) 676, 1003, 1351, 1850, 2948
Bse1I ACTGG 4 cut(s) 1787, 2341, 2482, 2698
Bse3DI GCAATG 2 cut(s) 241, 2717
Bse8I GATNNNNATC 2 cut(s) 1014, 1752
BseBI CCWGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
BseCI ATCGAT 2 cut(s) 2676, 3688
BseDI CCNNGG 5 cut(s) 676, 1003, 1351, 1850, 2948
BseGI GGATG 4 cut(s) 188, 1534, 2362, 2849
BseJI GATNNNNATC 2 cut(s) 1014, 1752
BseMI GCAATG 2 cut(s) 241, 2717
BseMII CTCAG 3 cut(s) 2285, 3327, 3446
BseNI ACTGG 4 cut(s) 1787, 2341, 2482, 2698
BseRI GAGGAG 1 cut(s) 3582
BseSI GKGCMC 2 cut(s) 475, 2477
BseXI GCAGC 7 cut(s) 117, 120, 736, 760, 2219, 2767, 3192
BseYI CCCAGC 2 cut(s) 3359, 3410
BsgI GTGCAG 2 cut(s) 195, 3420
Bsh1285I CGRYCG 2 cut(s) 870, 3692
BshFI GGCC 3 cut(s) 1497, 2267, 2639
BshNI GGYRCC 1 cut(s) 1248
BshVI ATCGAT 2 cut(s) 2676, 3688
BsiEI CGRYCG 2 cut(s) 870, 3692
BsiHKAI GWGCWC 2 cut(s) 475, 3241
BsiSI CCGG 1 cut(s) 2796
BslFI GGGAC 3 cut(s) 176, 1775, 3376
BsmAI GTCTC 3 cut(s) 251, 520, 1803
BsmFI GGGAC 3 cut(s) 176, 1775, 3376
BsmI GAATGC 4 cut(s) 2244, 2286, 2457, 2621
BsnI GGCC 3 cut(s) 1497, 2267, 2639
Bso31I GGTCTC 2 cut(s) 251, 520
Bsp119I TTCGAA 3 cut(s) 278, 670, 2344
Bsp1286I GDGCHC 3 cut(s) 475, 2477, 3241
Bsp1407I TGTACA 1 cut(s) 1507
Bsp19I CCATGG 1 cut(s) 2948
BspACI CCGC 7 cut(s) 127, 314, 1032, 2570, 2640, 2799, 3195
BspANI GGCC 3 cut(s) 1497, 2267, 2639
BspCNI CTCAG 3 cut(s) 2286, 3328, 3447
BspDI ATCGAT 2 cut(s) 2676, 3688
BspHI TCATGA 3 cut(s) 52, 940, 2373
BspLI GGNNCC 5 cut(s) 1250, 1496, 1657, 2946, 3610
BspMI ACCTGC 1 cut(s) 3188
BspOI GCTAGC 1 cut(s) 2726
BspPI GGATC 5 cut(s) 66, 105, 319, 3603, 3616
BspQI GCTCTTC 1 cut(s) 1596
BspT104I TTCGAA 3 cut(s) 278, 670, 2344
BspT107I GGYRCC 1 cut(s) 1248
BspTNI GGTCTC 2 cut(s) 251, 520
BsrDI GCAATG 2 cut(s) 241, 2717
BsrGI TGTACA 1 cut(s) 1507
BsrI ACTGG 4 cut(s) 1787, 2341, 2482, 2698
BssECI CCNNGG 5 cut(s) 676, 1003, 1351, 1850, 2948
BssT1I CCWWGG 1 cut(s) 2948
Bst2UI CCWGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
Bst6I CTCTTC 4 cut(s) 808, 1447, 1596, 2647
BstAPI GCANNNNNTGC 1 cut(s) 3407
BstAUI TGTACA 1 cut(s) 1507
BstBAI YACGTR 3 cut(s) 1069, 1232, 1799
BstBI TTCGAA 3 cut(s) 278, 670, 2344
BstC8I GCNNGC 3 cut(s) 210, 707, 2724
BstDEI CTNAG 6 cut(s) 215, 1091, 2294, 2755, 3336, 3455
BstDSI CCRYGG 2 cut(s) 1850, 2948
BstF5I GGATG 4 cut(s) 188, 1534, 2362, 2849
BstH2I RGCGCY 1 cut(s) 688
BstHHI GCGC 4 cut(s) 105, 164, 687, 1002
BstMAI GTCTC 3 cut(s) 251, 520, 1803
BstMCI CGRYCG 2 cut(s) 870, 3692
BstMWI GCNNNNNNNGC 2 cut(s) 2723, 3407
BstNI CCWGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
BstNSI RCATGY 6 cut(s) 225, 425, 1508, 1516, 2123, 3506
BstPAI GACNNNNGTC 1 cut(s) 961
BstSCI CCNGG 5 cut(s) 1003, 1351, 2683, 3106, 3484
BstSLI GKGCMC 2 cut(s) 475, 2477
BstSNI TACGTA 1 cut(s) 1799
BstV1I GCAGC 7 cut(s) 117, 120, 736, 760, 2219, 2767, 3192
BstV2I GAAGAC 9 cut(s) 850, 961, 1431, 1665, 1774, 2553, 2705, 3153, 3687
BstX2I RGATCY 3 cut(s) 1802, 2440, 3608
BstYI RGATCY 3 cut(s) 1802, 2440, 3608
Bsu15I ATCGAT 2 cut(s) 2676, 3688
BsuI GTATCC 1 cut(s) 903
BsuRI GGCC 3 cut(s) 1497, 2267, 2639
BsuTUI ATCGAT 2 cut(s) 2676, 3688
BtgI CCRYGG 2 cut(s) 1850, 2948
BtgZI GCGATG 2 cut(s) 1274, 2901
BtrI CACGTC 2 cut(s) 1311, 3076
BtsCI GGATG 4 cut(s) 188, 1534, 2362, 2849
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 5 cut(s) 72, 118, 1731, 2089, 2475
BveI ACCTGC 1 cut(s) 3188
Cac8I GCNNGC 3 cut(s) 210, 707, 2724
CciI TCATGA 3 cut(s) 52, 940, 2373
CfoI GCGC 4 cut(s) 105, 164, 687, 1002
Cfr13I GGNCC 6 cut(s) 19, 1495, 1646, 1943, 2144, 2681
ClaI ATCGAT 2 cut(s) 2676, 3688
DdeI CTNAG 6 cut(s) 215, 1091, 2294, 2755, 3336, 3455
DraI TTTAAA 1 cut(s) 3655
DrdI GACNNNNNNGTC 1 cut(s) 1776
DriI GACNNNNNGTC 1 cut(s) 2003
DseDI GACNNNNNNGTC 1 cut(s) 1776
EaeI YGGCCR 1 cut(s) 2637
Eam1104I CTCTTC 4 cut(s) 808, 1447, 1596, 2647
Eam1105I GACNNNNNGTC 1 cut(s) 2003
EarI CTCTTC 4 cut(s) 808, 1447, 1596, 2647
EciI GGCGGA 2 cut(s) 303, 1047
Eco105I TACGTA 1 cut(s) 1799
Eco130I CCWWGG 1 cut(s) 2948
Eco147I AGGCCT 1 cut(s) 2267
Eco31I GGTCTC 2 cut(s) 251, 520
Eco32I GATATC 1 cut(s) 536
Eco47I GGWCC 5 cut(s) 19, 1646, 1943, 2144, 2681
Eco57I CTGAAG 1 cut(s) 2118
Eco72I CACGTG 1 cut(s) 1232
EcoO109I RGGNCCY 2 cut(s) 1495, 1943
EcoRI GAATTC 1 cut(s) 3384
EcoRII CCWGG 5 cut(s) 1003, 1351, 2683, 3106, 3484
EcoRV GATATC 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 2948
EcoT22I ATGCAT 3 cut(s) 985, 1753, 2848
ErhI CCWWGG 1 cut(s) 2948
FalI AAGNNNNNCTT 4 cut(s) 2690, 2722, 3651, 3683
FaqI GGGAC 3 cut(s) 176, 1775, 3376
FauI CCCGC 2 cut(s) 2577, 2792
FauNDI CATATG 3 cut(s) 39, 919, 1635
FbaI TGATCA 1 cut(s) 3007
FblI GTMKAC 1 cut(s) 1935
Fnu4HI GCNGC 9 cut(s) 106, 109, 128, 725, 774, 2208, 2640, 2781, 3206
FokI GGATG 4 cut(s) 195, 1541, 2369, 2836
Fsp4HI GCNGC 9 cut(s) 106, 109, 128, 725, 774, 2208, 2640, 2781, 3206
FspBI CTAG 9 cut(s) 80, 165, 2456, 2525, 2723, 2817, 3294, 3366, 3381
GlaI GCGC 4 cut(s) 104, 163, 686, 1001
GluI GCNGC 9 cut(s) 106, 109, 128, 725, 774, 2208, 2640, 2781, 3206
GsaI CCCAGC 2 cut(s) 3363, 3414
GsuI CTGGAG 4 cut(s) 1827, 2499, 2706, 3468
HaeII RGCGCY 1 cut(s) 688
HaeIII GGCC 3 cut(s) 1497, 2267, 2639
HapII CCGG 1 cut(s) 2796
HhaI GCGC 4 cut(s) 105, 164, 687, 1002
Hin6I GCGC 4 cut(s) 103, 162, 685, 1000
HinP1I GCGC 4 cut(s) 103, 162, 685, 1000
HincII GTYRAC 3 cut(s) 2330, 3222, 3582
HindII GTYRAC 3 cut(s) 2330, 3222, 3582
HindIII AAGCTT 2 cut(s) 543, 1541
HpaI GTTAAC 1 cut(s) 3222
HpaII CCGG 1 cut(s) 2796
HphI GGTGA 9 cut(s) 55, 1019, 1426, 2053, 2082, 2114, 3017, 3122, 3632
Hpy99I CGWCG 1 cut(s) 1190
HpyAV CCTTC 5 cut(s) 271, 512, 738, 2043, 2093
HpyCH4IV ACGT 8 cut(s) 739, 1068, 1185, 1231, 1310, 1798, 2702, 3075
HpyF10VI GCNNNNNNNGC 2 cut(s) 2723, 3407
HpyF3I CTNAG 6 cut(s) 215, 1091, 2294, 2755, 3336, 3455
HpySE526I ACGT 8 cut(s) 739, 1068, 1185, 1231, 1310, 1798, 2702, 3075
HspAI GCGC 4 cut(s) 103, 162, 685, 1000
KpnI GGTACC 1 cut(s) 1252
Ksp22I TGATCA 1 cut(s) 3007
KspAI GTTAAC 1 cut(s) 3222
LguI GCTCTTC 1 cut(s) 1596
LmnI GCTCC 2 cut(s) 1899, 3244
Lsp1109I GCAGC 7 cut(s) 117, 120, 736, 760, 2219, 2767, 3192
MaeI CTAG 9 cut(s) 80, 165, 2456, 2525, 2723, 2817, 3294, 3366, 3381
MaeII ACGT 8 cut(s) 739, 1068, 1185, 1231, 1310, 1798, 2702, 3075
MaeIII GTNAC 7 cut(s) 990, 1106, 1313, 1874, 2308, 2957, 3284
MfeI CAATTG 3 cut(s) 581, 700, 2589
MflI RGATCY 3 cut(s) 1802, 2440, 3608
MhlI GDGCHC 3 cut(s) 475, 2477, 3241
MlyI GAGTC 6 cut(s) 840, 857, 1032, 1145, 3131, 3587
MmeI TCCRAC 3 cut(s) 850, 1201, 1506
Mph1103I ATGCAT 3 cut(s) 985, 1753, 2848
MslI CAYNNNNRTG 9 cut(s) 410, 426, 922, 1817, 1881, 2633, 2854, 3015, 3507
MspI CCGG 1 cut(s) 2796
MspR9I CCNGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
MunI CAATTG 3 cut(s) 581, 700, 2589
Mva1269I GAATGC 4 cut(s) 2244, 2286, 2457, 2621
MvaI CCWGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
MwoI GCNNNNNNNGC 2 cut(s) 2723, 3407
NcoI CCATGG 1 cut(s) 2948
NdeI CATATG 3 cut(s) 39, 919, 1635
NheI GCTAGC 1 cut(s) 2722
NlaIV GGNNCC 5 cut(s) 1250, 1496, 1657, 2946, 3610
NmuCI GTSAC 3 cut(s) 1874, 2308, 2957
NsiI ATGCAT 3 cut(s) 985, 1753, 2848
NspI RCATGY 6 cut(s) 225, 425, 1508, 1516, 2123, 3506
NspV TTCGAA 3 cut(s) 278, 670, 2344
OliI CACNNNNGTG 1 cut(s) 1817
PagI TCATGA 3 cut(s) 52, 940, 2373
PaqCI CACCTGC 1 cut(s) 3188
PceI AGGCCT 1 cut(s) 2267
PciI ACATGT 4 cut(s) 221, 1504, 2119, 3502
PciSI GCTCTTC 1 cut(s) 1596
PcsI WCGNNNNNNNCGW 3 cut(s) 876, 1033, 1316
PctI GAATGC 4 cut(s) 2244, 2286, 2457, 2621
PfeI GAWTC 7 cut(s) 431, 640, 1079, 1639, 2743, 2820, 2827
PflFI GACNNNGTC 2 cut(s) 866, 2253
PfoI TCCNGGA 1 cut(s) 2683
PkrI GCNGC 9 cut(s) 107, 110, 129, 726, 775, 2209, 2641, 2782, 3207
Ple19I CGATCG 1 cut(s) 3692
PleI GAGTC 6 cut(s) 840, 857, 1032, 1145, 3131, 3586
PmaCI CACGTG 1 cut(s) 1232
PmlI CACGTG 1 cut(s) 1232
PpsI GAGTC 6 cut(s) 840, 857, 1032, 1145, 3131, 3586
Ppu21I YACGTR 3 cut(s) 1069, 1232, 1799
PpuMI RGGWCCY 1 cut(s) 1943
PscI ACATGT 4 cut(s) 221, 1504, 2119, 3502
PshAI GACNNNNGTC 1 cut(s) 961
PshBI ATTAAT 3 cut(s) 438, 933, 2175
PsiI TTATAA 1 cut(s) 1845
Psp5II RGGWCCY 1 cut(s) 1943
Psp6I CCWGG 5 cut(s) 1003, 1351, 2683, 3106, 3484
PspCI CACGTG 1 cut(s) 1232
PspFI CCCAGC 2 cut(s) 3359, 3410
PspGI CCWGG 5 cut(s) 1003, 1351, 2683, 3106, 3484
PspN4I GGNNCC 5 cut(s) 1250, 1496, 1657, 2946, 3610
PspPI GGNCC 6 cut(s) 19, 1495, 1646, 1943, 2144, 2681
PspPPI RGGWCCY 1 cut(s) 1943
PsuI RGATCY 3 cut(s) 1802, 2440, 3608
PsyI GACNNNGTC 2 cut(s) 866, 2253
PvuI CGATCG 1 cut(s) 3692
RseI CAYNNNNRTG 9 cut(s) 410, 426, 922, 1817, 1881, 2633, 2854, 3015, 3507
SapI GCTCTTC 1 cut(s) 1596
SatI GCNGC 9 cut(s) 106, 109, 128, 725, 774, 2208, 2640, 2781, 3206
Sau96I GGNCC 6 cut(s) 19, 1495, 1646, 1943, 2144, 2681
SchI GAGTC 6 cut(s) 840, 857, 1032, 1145, 3131, 3587
ScrFI CCNGG 5 cut(s) 1005, 1353, 2685, 3108, 3486
SduI GDGCHC 3 cut(s) 475, 2477, 3241
SfuI TTCGAA 3 cut(s) 278, 670, 2344
SinI GGWCC 5 cut(s) 19, 1646, 1943, 2144, 2681
SmiMI CAYNNNNRTG 9 cut(s) 410, 426, 922, 1817, 1881, 2633, 2854, 3015, 3507
SmlI CTYRAG 1 cut(s) 1409
SmoI CTYRAG 1 cut(s) 1409
SnaBI TACGTA 1 cut(s) 1799
SseBI AGGCCT 1 cut(s) 2267
SsiI CCGC 7 cut(s) 127, 314, 1032, 2570, 2640, 2799, 3195
SspI AATATT 2 cut(s) 289, 3262
SspMI CTAG 9 cut(s) 80, 165, 2456, 2525, 2723, 2817, 3294, 3366, 3381
StuI AGGCCT 1 cut(s) 2267
StyD4I CCNGG 5 cut(s) 1003, 1351, 2683, 3106, 3484
StyI CCWWGG 1 cut(s) 2948
TaiI ACGT 8 cut(s) 742, 1071, 1188, 1234, 1313, 1801, 2705, 3078
TaqII GACCGA 3 cut(s) 856, 1178, 2161
TatI WGTACW 2 cut(s) 1507, 3126
TauI GCSGC 2 cut(s) 130, 2642
TfiI GAWTC 7 cut(s) 431, 640, 1079, 1639, 2743, 2820, 2827
TscAI CASTG 5 cut(s) 79, 118, 1738, 2089, 2482
TseFI GTSAC 3 cut(s) 1874, 2308, 2957
TseI GCWGC 7 cut(s) 105, 108, 724, 773, 2207, 2780, 3205
Tsp45I GTSAC 3 cut(s) 1874, 2308, 2957
TspGWI ACGGA 1 cut(s) 2851
TspRI CASTG 5 cut(s) 79, 118, 1738, 2089, 2482
Tth111I GACNNNGTC 2 cut(s) 866, 2253
VneI GTGCAC 1 cut(s) 471
VpaK11BI GGWCC 5 cut(s) 19, 1646, 1943, 2144, 2681
VspI ATTAAT 3 cut(s) 438, 933, 2175
XbaI TCTAGA 1 cut(s) 2816
XceI RCATGY 6 cut(s) 225, 425, 1508, 1516, 2123, 3506
XcmI CCANNNNNNNNNTGG 3 cut(s) 836, 1444, 3592
XmiI GTMKAC 1 cut(s) 1935
XspI CTAG 9 cut(s) 80, 165, 2456, 2525, 2723, 2817, 3294, 3366, 3381
Zsp2I ATGCAT 3 cut(s) 985, 1753, 2848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.