Rorug05G0101500

G-quadruplex DNA unwinding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000080
Physical Location & Seq
Forward (+)
8923967 .. 8927415
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0101500.1

Sequence Viewer

Length: 1119 bp
ATGCCCCTATCCCCTGTCAAGGAAGACCCTGATGGCCCAAAGCGGCCCCGTTCGTCCTTGTCGGAAGACCCTAGCCAGGGCCAGAACCTAACCCTAACCCCTGTCACGGAAGACCCTGATGTCCACGACCCGGACCCATCCATGCCCCTATCCCCTATCGTGGTCCGCCTGAAGCGGCACCGTTCGTCCTTGTTCGAAGACCCTAGCCACGACCAGAACCTAACCCCTGTCACGGAAGACTCTGATGTTGCGAAGCGGCCCCGTTCGTCCTTGCCCTCTGAACACCCTGATATCCAGGGCGGCAAGCACCCGGACCCGGCGAAGCCCTTAAAACCAGTAAGCCGTACGCTGAAGGAGATTATGGATGAGGCCGGCCCGCTCATCTCTAAAGAGCTACAGCTCGAGTATGCTAAGATTTTTGCTAAGTCGAAGGAGGCCGAACCTATTACCAATCGCGTGACAGGGTTTGGTGGACCCATTAACGTAGTAGAGAGTTATGAGGCCAAACCTATTACCAATCGCGTGATGGCCTCCTTCCCGGAGCCTCTTTTGGGTGGACGCATTAACGTAGTACAGAGTTATGGTCCTGATACACTAGCTGAAGCCGCAGCTGCTGGTGCTAGCAAGAGGACACTCCGTGATACACCTCTTTTTGGTGGATGCATTAACGTAGTACAGAGTTATGGTCCTGATACAGTAGCTGAAACCGAAGCTGCTCGTGCTAGCAAGAGGACACTCCCTGATACACCTTTTTGGAATACTATTGATTCTCTGAGACGTAGAAGTGCAGAAAACCCAAAGTATTGTGGAAAAGAAGCATGGAAAGAATTCATCGAACGTCAAAGGAGTACATGGGGGCCGTGTCAGATTTGTTTGAAGGCTGATGACCACATGAGTTTGCACTGCCCATATCTCGACTATGTCCCGGAAGGCGCATCTGTTGGCCCTGGCGTTGAACTAGTTTGTAGGGGTTGTGGACTTAAGGACAAGCACCCTGGTATGAATTGGTCTAAACGTGCTATTCTCAAGTCGTGTTTCATTTGTGCATCAGACCACTGGGGTACCGATTGCCCGCATGCTAAACAGCATAAAACGGTTCCATATAATCGCGACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

372

Amino Acids

41.02

Weight (kDa)

6.83

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
Acc65I GGTACC 1 cut(s) 1061
AccB1I GGYRCC 2 cut(s) 177, 1061
AccBSI CCGCTC 1 cut(s) 379
AccII CGCG 3 cut(s) 456, 522, 1110
AciI CCGC 9 cut(s) 43, 166, 175, 256, 300, 377, 606, 1073, 1114
AcsI RAATTY 1 cut(s) 827
AcuI CTGAAG 3 cut(s) 191, 371, 621
AdeI CACNNNGTG 1 cut(s) 638
AfaI GTAC 5 cut(s) 346, 573, 675, 850, 1063
AflII CTTAAG 1 cut(s) 980
AgsI TTSAA 2 cut(s) 877, 956
AhlI ACTAGT 1 cut(s) 958
AjnI CCWGG 4 cut(s) 75, 294, 946, 994
AluBI AGCT 6 cut(s) 394, 400, 599, 611, 701, 713
AluI AGCT 6 cut(s) 394, 400, 599, 611, 701, 713
Alw26I GTCTC 1 cut(s) 769
AlwNI CAGNNNCTG 2 cut(s) 614, 701
Ama87I CYCGRG 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 608, 611, 713
ApoI RAATTY 1 cut(s) 827
Asp700I GAANNNNTTC 1 cut(s) 827
Asp718I GGTACC 1 cut(s) 1061
AspLEI GCGC 1 cut(s) 935
AsuC2I CCSGG 5 cut(s) 131, 311, 317, 539, 926
AsuII TTCGAA 1 cut(s) 195
AsuNHI GCTAGC 2 cut(s) 620, 722
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 6 cut(s) 133, 163, 313, 473, 584, 686
BaeI ACNNNNGTAYC 2 cut(s) 1045, 1078
BanI GGYRCC 2 cut(s) 177, 1061
BauI CACGAG 1 cut(s) 717
BbsI GAAGAC 5 cut(s) 30, 72, 117, 204, 243
BbvI GCAGC 3 cut(s) 598, 620, 700
BccI CCATC 3 cut(s) 26, 145, 520
BceAI ACGGC 2 cut(s) 327, 844
BciT130I CCWGG 4 cut(s) 77, 296, 948, 996
BcnI CCSGG 5 cut(s) 131, 311, 317, 539, 926
BcoDI GTCTC 1 cut(s) 769
BcuI ACTAGT 1 cut(s) 958
BfaI CTAG 6 cut(s) 72, 204, 596, 621, 723, 959
BfmI CTRYAG 1 cut(s) 395
BfrI CTTAAG 1 cut(s) 980
BisI GCNGC 8 cut(s) 44, 176, 257, 301, 606, 609, 612, 714
BlsI GCNGC 8 cut(s) 45, 177, 258, 302, 607, 610, 613, 715
Bme1390I CCNGG 9 cut(s) 77, 131, 296, 311, 317, 539, 926, 948, 996
Bme18I GGWCC 6 cut(s) 133, 163, 313, 473, 584, 686
BmeT110I CYCGRG 1 cut(s) 401
BmrFI CCNGG 9 cut(s) 77, 131, 296, 311, 317, 539, 926, 948, 996
BmrI ACTGGG 1 cut(s) 1066
BmsI GCATC 3 cut(s) 650, 944, 1055
BmtI GCTAGC 2 cut(s) 624, 726
BmuI ACTGGG 1 cut(s) 1066
BpiI GAAGAC 5 cut(s) 30, 72, 117, 204, 243
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 1010
BpuMI CCSGG 5 cut(s) 131, 311, 317, 539, 926
BsaJI CCNNGG 4 cut(s) 76, 295, 946, 994
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 335, 1061
BseBI CCWGG 4 cut(s) 77, 296, 948, 996
BseDI CCNNGG 4 cut(s) 76, 295, 946, 994
BseGI GGATG 3 cut(s) 137, 370, 665
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 2 cut(s) 335, 1061
BseXI GCAGC 3 cut(s) 598, 620, 700
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 3 cut(s) 456, 522, 1110
Bsh1285I CGRYCG 1 cut(s) 1114
BshNI GGYRCC 2 cut(s) 177, 1061
BsiEI CGRYCG 1 cut(s) 1114
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 6 cut(s) 131, 311, 317, 372, 539, 926
BsiWI CGTACG 1 cut(s) 344
BslFI GGGAC 1 cut(s) 908
BsmAI GTCTC 1 cut(s) 769
BsmBI CGTCTC 1 cut(s) 769
BsmFI GGGAC 1 cut(s) 908
BsoBI CYCGRG 1 cut(s) 401
Bsp119I TTCGAA 1 cut(s) 195
Bsp68I TCGCGA 1 cut(s) 1110
BspACI CCGC 9 cut(s) 43, 166, 175, 256, 300, 377, 606, 1073, 1114
BspCNI CTCAG 1 cut(s) 765
BspFNI CGCG 3 cut(s) 456, 522, 1110
BspOI GCTAGC 2 cut(s) 624, 726
BspT104I TTCGAA 1 cut(s) 195
BspT107I GGYRCC 2 cut(s) 177, 1061
BspTI CTTAAG 1 cut(s) 980
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 2 cut(s) 335, 1061
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 4 cut(s) 76, 295, 946, 994
BssSI CACGAG 1 cut(s) 717
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 4 cut(s) 77, 296, 948, 996
Bst4CI ACNGT 3 cut(s) 182, 697, 1096
BstAFI CTTAAG 1 cut(s) 980
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 7 cut(s) 305, 373, 377, 622, 724, 1073, 1077
BstDEI CTNAG 3 cut(s) 411, 423, 773
BstF5I GGATG 3 cut(s) 137, 370, 665
BstFNI CGCG 3 cut(s) 456, 522, 1110
BstHHI GCGC 1 cut(s) 935
BstMAI GTCTC 1 cut(s) 769
BstMCI CGRYCG 1 cut(s) 1114
BstMWI GCNNNNNNNGC 4 cut(s) 605, 611, 617, 719
BstNI CCWGG 4 cut(s) 77, 296, 948, 996
BstNSI RCATGY 1 cut(s) 1079
BstSCI CCNGG 9 cut(s) 75, 129, 294, 309, 315, 537, 924, 946, 994
BstSFI CTRYAG 1 cut(s) 395
BstUI CGCG 3 cut(s) 456, 522, 1110
BstV1I GCAGC 3 cut(s) 598, 620, 700
BstV2I GAAGAC 5 cut(s) 30, 72, 117, 204, 243
BtsCI GGATG 3 cut(s) 137, 370, 665
BtsI GCAGTG 1 cut(s) 901
BtsIMutI CAGTG 2 cut(s) 901, 1054
BtuMI TCGCGA 1 cut(s) 1110
Cac8I GCNNGC 7 cut(s) 305, 373, 377, 622, 724, 1073, 1077
CaiI CAGNNNCTG 2 cut(s) 614, 701
CfoI GCGC 1 cut(s) 935
Cfr10I RCCGGY 1 cut(s) 371
CseI GACGC 1 cut(s) 567
Csp6I GTAC 5 cut(s) 345, 572, 674, 849, 1062
CviAII CATG 5 cut(s) 142, 819, 852, 892, 1076
CviQI GTAC 5 cut(s) 345, 572, 674, 849, 1062
DdeI CTNAG 3 cut(s) 411, 423, 773
DraIII CACNNNGTG 1 cut(s) 638
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 155
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 6 cut(s) 133, 163, 313, 473, 584, 686
Eco57I CTGAAG 3 cut(s) 191, 371, 621
Eco88I CYCGRG 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 827
EcoRII CCWGG 4 cut(s) 75, 294, 946, 994
EcoRV GATATC 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 665
Esp3I CGTCTC 1 cut(s) 769
FaeI CATG 5 cut(s) 145, 822, 855, 895, 1079
FaqI GGGAC 1 cut(s) 908
FatI CATG 5 cut(s) 141, 818, 851, 891, 1075
FauI CCCGC 2 cut(s) 384, 1080
Fnu4HI GCNGC 8 cut(s) 44, 176, 257, 301, 606, 609, 612, 714
FokI GGATG 3 cut(s) 124, 377, 672
FseI GGCCGGCC 1 cut(s) 375
Fsp4HI GCNGC 8 cut(s) 44, 176, 257, 301, 606, 609, 612, 714
FspBI CTAG 6 cut(s) 72, 204, 596, 621, 723, 959
GlaI GCGC 1 cut(s) 934
GluI GCNGC 8 cut(s) 44, 176, 257, 301, 606, 609, 612, 714
HapII CCGG 6 cut(s) 131, 311, 317, 372, 539, 926
HgaI GACGC 1 cut(s) 567
HhaI GCGC 1 cut(s) 935
Hin1II CATG 5 cut(s) 145, 822, 855, 895, 1079
Hin6I GCGC 1 cut(s) 933
HinP1I GCGC 1 cut(s) 933
HinfI GANTC 2 cut(s) 239, 767
HpaII CCGG 6 cut(s) 131, 311, 317, 372, 539, 926
Hpy166II GTNNAC 4 cut(s) 124, 473, 557, 977
Hpy188I TCNGA 6 cut(s) 64, 244, 280, 774, 867, 1051
Hpy188III TCNNGA 4 cut(s) 587, 689, 914, 1109
Hpy8I GTNNAC 4 cut(s) 124, 473, 557, 977
HpyAV CCTTC 5 cut(s) 346, 424, 544, 871, 923
HpyCH4III ACNGT 3 cut(s) 182, 697, 1096
HpyCH4IV ACGT 6 cut(s) 483, 567, 669, 778, 838, 1015
HpyCH4V TGCA 4 cut(s) 663, 788, 901, 1046
HpyF10VI GCNNNNNNNGC 4 cut(s) 605, 611, 617, 719
HpyF3I CTNAG 3 cut(s) 411, 423, 773
HpySE526I ACGT 6 cut(s) 483, 567, 669, 778, 838, 1015
Hsp92II CATG 5 cut(s) 145, 822, 855, 895, 1079
HspAI GCGC 1 cut(s) 933
KpnI GGTACC 1 cut(s) 1065
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 3 cut(s) 598, 620, 700
LweI GCATC 3 cut(s) 650, 944, 1055
MaeI CTAG 6 cut(s) 72, 204, 596, 621, 723, 959
MaeII ACGT 6 cut(s) 483, 567, 669, 778, 838, 1015
MaeIII GTNAC 3 cut(s) 103, 229, 457
MbiI CCGCTC 1 cut(s) 379
MboII GAAGA 5 cut(s) 35, 77, 122, 209, 248
MluCI AATT 2 cut(s) 827, 1003
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 9 cut(s) 286, 361, 427, 493, 541, 555, 621, 657, 723
Mph1103I ATGCAT 1 cut(s) 665
MroNI GCCGGC 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 5 cut(s) 329, 480, 564, 666, 981
MspA1I CMGCKG 1 cut(s) 611
MspCI CTTAAG 1 cut(s) 980
MspI CCGG 6 cut(s) 131, 311, 317, 372, 539, 926
MspR9I CCNGG 9 cut(s) 77, 131, 296, 311, 317, 539, 926, 948, 996
MvaI CCWGG 4 cut(s) 77, 296, 948, 996
MvnI CGCG 3 cut(s) 456, 522, 1110
MwoI GCNNNNNNNGC 4 cut(s) 605, 611, 617, 719
NaeI GCCGGC 1 cut(s) 373
NciI CCSGG 5 cut(s) 131, 311, 317, 539, 926
NgoMIV GCCGGC 1 cut(s) 371
NheI GCTAGC 2 cut(s) 620, 722
NlaIII CATG 5 cut(s) 145, 822, 855, 895, 1079
NmuCI GTSAC 3 cut(s) 103, 229, 457
NruI TCGCGA 1 cut(s) 1110
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 1 cut(s) 1079
NspV TTCGAA 1 cut(s) 195
PaeI GCATGC 1 cut(s) 1079
PaeR7I CTCGAG 1 cut(s) 401
PdiI GCCGGC 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 1 cut(s) 767
Pfl23II CGTACG 1 cut(s) 344
PflFI GACNNNGTC 1 cut(s) 920
PfoI TCCNGGA 2 cut(s) 537, 924
PkrI GCNGC 8 cut(s) 45, 177, 258, 302, 607, 610, 613, 715
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 4 cut(s) 75, 294, 946, 994
PspGI CCWGG 4 cut(s) 75, 294, 946, 994
PspLI CGTACG 1 cut(s) 344
PspXI VCTCGAGB 1 cut(s) 401
PstNI CAGNNNCTG 2 cut(s) 614, 701
PsyI GACNNNGTC 1 cut(s) 920
PvuII CAGCTG 1 cut(s) 611
RigI GGCCGGCC 1 cut(s) 375
RruI TCGCGA 1 cut(s) 1110
RsaI GTAC 5 cut(s) 346, 573, 675, 850, 1063
RsaNI GTAC 5 cut(s) 345, 572, 674, 849, 1062
SaqAI TTAA 5 cut(s) 329, 480, 564, 666, 981
SatI GCNGC 8 cut(s) 44, 176, 257, 301, 606, 609, 612, 714
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 9 cut(s) 77, 131, 296, 311, 317, 539, 926, 948, 996
SfaNI GCATC 3 cut(s) 650, 944, 1055
SfcI CTRYAG 1 cut(s) 395
Sfr274I CTCGAG 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 6 cut(s) 133, 163, 313, 473, 584, 686
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 3 cut(s) 401, 980, 1025
SmoI CTYRAG 3 cut(s) 401, 980, 1025
SpeI ACTAGT 1 cut(s) 958
SphI GCATGC 1 cut(s) 1079
Sse9I AATT 2 cut(s) 827, 1003
SsiI CCGC 9 cut(s) 43, 166, 175, 256, 300, 377, 606, 1073, 1114
SspMI CTAG 6 cut(s) 72, 204, 596, 621, 723, 959
StyD4I CCNGG 9 cut(s) 75, 129, 294, 309, 315, 537, 924, 946, 994
TaaI ACNGT 3 cut(s) 182, 697, 1096
TaiI ACGT 6 cut(s) 486, 570, 672, 781, 841, 1018
TaqI TCGA 5 cut(s) 195, 402, 428, 834, 915
TasI AATT 2 cut(s) 827, 1003
TatI WGTACW 3 cut(s) 571, 673, 848
TauI GCSGC 5 cut(s) 46, 178, 259, 303, 608
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 5 cut(s) 329, 480, 564, 666, 981
Tru9I TTAA 5 cut(s) 329, 480, 564, 666, 981
TscAI CASTG 2 cut(s) 908, 1061
TseFI GTSAC 3 cut(s) 103, 229, 457
TseI GCWGC 3 cut(s) 608, 611, 713
Tsp45I GTSAC 3 cut(s) 103, 229, 457
TspDTI ATGAA 3 cut(s) 820, 1016, 1027
TspGWI ACGGA 3 cut(s) 122, 248, 626
TspRI CASTG 2 cut(s) 908, 1061
Tth111I GACNNNGTC 1 cut(s) 920
Vha464I CTTAAG 1 cut(s) 980
VpaK11BI GGWCC 6 cut(s) 133, 163, 313, 473, 584, 686
XapI RAATTY 1 cut(s) 827
XceI RCATGY 1 cut(s) 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 6 cut(s) 72, 204, 596, 621, 723, 959
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.